• 제목/요약/키워드: double sequence

검색결과 306건 처리시간 0.027초

그래프 이론을 기반으로 한 선박의 블록 어셈블리 모델링 (Ship block assembly modeling based on the graph theory)

  • 조학종;이규열
    • 대한조선학회논문집
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    • 제38권2호
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    • pp.79-86
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    • 2001
  • 본 연구에서는 수작업으로 행해지는 블록 어셈블리 순서 결정과 같은 조선 공정계획을 자동화 하기 위하여 선박의 어셈블리 모델을, 그래프 이론을 기반으로, 기하, 관계, 순서 및 계층의 4단계 모델로 구성하는 방법을 제안하였다. 기하모델은 CAD로부터 입력받는 부품들의 기하형상에 일부 속성 값(판부재, 보강재)을 부가한 것이다. 어셈블리 부품간 연결관계를 연결관계를 표현하기 위한 관계 모델을 기하 모델의 곡면간 교차계산을 통해 생성하고, 블록 어셈블리 순서와 구성관계를 나타내기 위해, 관계 모델로부터 그래프 알고리즘과 조선소의 조립 방법을 그래프 탐색 규칙으로 사용해서, 순서모델을 생성하였으며, 이를 위상정렬하여 어셈블리 계층 및 부품 리스트를 표현하는 계층모델을 생성하였다. 끝으로 위에서 제안한 4단계에 따라 Single type, double bottom type과 같은 대표적인 블록 어셈블리 모델을 대상으로 본 연구에서 제안한 방법의 타당성을 검증하였다.

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간흡충 tropomyosin: PCR로 일부분 증폭된 cDNA의 cloning 및 염기서열 (Clonorchis sinensis tropomyosin: Cloning and sequence of partial cDNA amplified by PCR)

  • 홍성종
    • Parasites, Hosts and Diseases
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    • 제31권3호
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    • pp.285-292
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    • 1993
  • 간흡충 total RNk에는 많은 량의 185 rRNA가 함유되어 있었지만 285 rRNA는 그 양이 매우 적었다. 약 $8{\;}{\mu\textrm{g}}의{\;}poly{\;}(A)^{+}$ mRNAS부터 합성된 double-stranded CDNA는 대부분이 0.4-4.2 kb 크기이었으며 9.5 kb에 달하는 것도 있었다. 이미 보고되어 있는 tropomyosin의 amino산 서열을 기준하여 5개의 degenerated oligonucleotide (sense primer 2개와 antisense primer 3개)를 합성하였다. TotalcDNA를 template로 하고 sense primer와 antisense primer를 조합하여 실시한 PCR 산물 중에서 580 bp 크기의 특이 유전자가 나타났다. 만손주혈흡충의 tropomyosin CDNA를 탐색자로 써서 Southern hybridization했을 때 이 유전자만이 검출되어서. 이 유전자는 간횹충 tropomyosin (CSTM) CDNA의 일부분일 가능성이 높다고 생각되어 sequencing vector인 POEM-3Zf(-)에 cloning한 다음 염기서열을 결정하였다. nRf 증폭된 CSTM CDNA는 크기가 575 bp이었으며 191개의 predicted amino산 서열은 한 개의 open reading frame을 갖고 있었다 CSTM CDNA의 amino산 서열은 만손주혈흡충 tropomyosln과 86.3%. Trichosoonvk: colhnfornis tropomyosin과 51.1% 의 유사성을 갖고 있었다. 이 CSTM cDNA fragment는 앞으로 간흡충 cDNA library를 screening하여 완전한 CnM CDNA를 cloning하기에 좋은 probe로 쓰일 것으로 예상된다.

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2단계 규칙을 이용한 해체된 한글 음절의 결합 (Assembling Disjoint Korean Syllables Using Two-Step Rules)

  • 이주호;김학수
    • 인지과학
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    • 제19권3호
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    • pp.283-295
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    • 2008
  • SMS나 메신저의 사용이 증가함에 따자 의도적으로 음절을 해체한 새로운 형태의 문장들이 젊은이들 사이에서 습관적으로 사용되고 있다. 이러한 상황에서 자연어 인터페이스 시스템을 개발하기 위해서는 해체된 한글 음절을 결합하여 올바른 문장을 만들어 주는 기술이 먼저 개발되어야 한다. 본 논문에서는 해체된 음절을 2단계 규칙을 이용하여 결합해주는 방법을 제안한다. 1단계에서는 수동으로 자성한 휴리스틱을 이용하여 단순하게 초성, 중성, 종성으로만 해체된 음절을 결합한다. 그리고 2단계에서는 매핑 테이블과 변환기반 학습을 이용하여 복자음까지 해체된 음절을 결합한다. 실험 결과, 제안한 방법은 단순 해체 음절의 결합과 복자음 해체 음절의 결합에서 각각 100%와 99.98%라는 매우 높은 정확률을 보였다.

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Ku80의 DNA-PKcs 결합부위 합성 Peptide 투여에 의한 유방암세포의 DNA-dependent protein kinase 억제 효과 (Effect on the Inhibition of DNA-PK in Breast Cancer Cell lines(MDA-465 and MDA-468) with DNA-PKcs Binding Domain Synthetic Peptide of Ku80)

  • 김충희;김태숙;문양수;정장용;강정부;김종수;강명곤;박희성
    • 한국임상수의학회지
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    • 제21권3호
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    • pp.253-258
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    • 2004
  • DNA double-strand break (DSB) is a serious treat for the cells including mutations, chromosome rearrangements, and even cell death if not repaired or misrepaired. Ku heterodimer regulatory DNA binding subunits (Ku70/Ku80) bound to double strand DNA breaks are able to interact with 470-kDa DNA-dependent protein kinase catalytic subunit (DNA-PKcs), and the interaction is essential for DNA-dependent protein kinase (DNA-PK) activity. The Ku80 mutants were designed to bind Ku70 but not DNA end binding activity and the peptides were treated in breast cancer cells for co-therapy strategy to see whether the targeted inhibition of DNA-dependent protein kinase (DNA-PK) activity sensitized breast cancer cells to ionizing irradiation or chemotherapy drug to develop a treatment of breast tumors by targeting proteins involved in damage-signaling pathway and/or DNA repair. We designed domains of Ku80 mutants, 26 residues of amino acids (HN-26) as a control peptide or 38 (HNI-38) residues of amino acids which contain domains of the membrane-translocation hydrophobic signal sequence and the nuclear localization sequence, but HNI-38 has additional twelve residues of peptide inhibitor region. We observed that the synthesized peptide (HNI-38) prevented DNA-PKcs from binding to Ku70/Ku80, resulting in inactivation of DNA-PK complex activity in breast cancer cells (MDA-465 and MDA-468). Consequently, the peptide treated cells exhibited poor to no DNA repair, and became highly sensitive to irradiation or chemotherapy drugs. The growth of breast cancer cells was also inhibited. These results demonstrate the possibility of synthetic peptide to apply breast cancer therapy to induce apoptosis of cancer cells.

A micro-computed tomographic study of remaining filling materials of two bioceramic sealers and epoxy resin sealer after retreatment

  • Kim, KyungJae;Kim, Da Vin;Kim, Sin-Young;Yang, SungEun
    • Restorative Dentistry and Endodontics
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    • 제44권2호
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    • pp.18.1-18.9
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    • 2019
  • Objective: This study evaluated the presence of residual root canal filling material after retreatment using micro-computed tomography (micro-CT). Materials and Methods: Extracted human teeth (single- and double-rooted, n = 21/each; C-shaped, n = 15) were prepared with ProFile and randomly assigned to three subgroups for obturation with gutta-percha and three different sealers (EndoSeal MTA, EndoSequence BC sealer, and AH Plus). After 10 days, the filling material was removed and the root canals were instrumented one size up from the previous master apical file size. The teeth were scanned using micro-CT before and after retreatment. The percentage of remaining filling material after retreatment was calculated at the coronal, middle, and apical thirds. Data were analyzed using the Kruskal-Wallis test and Mann-Whitney U test with Bonferroni post hoc correction. Results: The tested sealers showed no significant differences in the percentage of remaining filling material in single- and double-rooted teeth, although EndoSeal MTA showed the highest value in C-shaped roots (p < 0.05). The percentage of remaining filling material of AH Plus and EndoSeal MTA was significantly higher in C-shaped roots than in single- or double-roots (p < 0.05), while that of BC sealer was similar across all root types. EndoSeal MTA showed the highest values at the apical thirds of single- and double-roots (p < 0.05); otherwise, no significant differences were observed among the coronal, middle, and apical thirds. Conclusions: Within the limitations of this study, a large amount of EndoSeal MTA remained after retreatment, especially in C-shaped root canals.

GENOME STRUCTURE OF Bombyx mori NUCLEOPOLYHEDROVIRUS

  • SUSUMU MAEDA
    • 한국잠사학회:학술대회논문집
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    • 한국잠사학회 1997년도 Progress and Future Development of Sericultural Science and Technology 40th Anniversary Commemoration Symposium
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    • pp.73-101
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    • 1997
  • Baculoviruses are characterized by large double-stranded circular DNA genomes and rod-shaped enveloped virions. Bombyx mori nucleopolyhedrovirus(BmNPV) is a major pathogen, which causes severe damage in sericulture. Currently, BmNPV is recogtnized as an improtant tool in molecular biology, especially for expression of useful genes in B.mori cells and silkworm larvae. Our laboratories have focused on the studies of the molecular mechanisms of BmNPV replication and the application of BmNPV to agriculture and medicine. The entire nucleotide sequence of the BmNPV genome has recently determined. The BmNPV genome possessed 135 putative genes and 7 homologous repeated sequence (hrs) regions. Relatively little space, a few to a few hundred base-pairs, was observed between the open reading frames and hrs. Termination codons often overlapped. These results showed a compactly packde BmNPV genome. Based on comparative sequence analyses, we speculated that the ancestor of BmNPV was a baculovirus similar to Autographa californica NPV(AcNPV). The function of the BmNPV genes were characterized by gene deletion analysis; p35 was found to be involved in blocking apoptosis and cysteine proteinase was found to be involved in horizontal virus transmission by degrading viral-infected larval host. By AcNPV and BmNPV coinfection experiments, we identified a BmNPV gene involved in expanding host specificity of AcNPV. The identified gene was likely encoded a DNA helicase based on the amino acid sequence analysis; a few amino acid substitutions in the putative DNA helicase gene resulted in the expansion of host range of AcNPV. These findings indicate that BmNPV evolved within a short period from an AcNPV-like ancestral virus due to rapid evolution including specific amino acid substitutions and gene deletions/insertions.

Genetic Variation in a DNA Double Strand Break Repair Gene in Saudi Population: A Comparative Study with Worldwide Ethnic Groups

  • Areeshi, Mohammed Yahya
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권12호
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    • pp.7091-7094
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    • 2013
  • DNA repair capacity is crucial in maintaining cellular functions and homeostasis. However, it can be altered based on DNA sequence variations in DNA repair genes and this may lead to the development of many diseases including malignancies. Identification of genetic polymorphisms responsible for reduced DNA repair capacity is necessary for better prevention. Homologous recombination (HR), a major double strand break repair pathway, plays a critical role in maintaining the genome stability. The present study was performed to determine the frequency of the HR gene XRCC3 Exon 7 (C18067T, rs861539) polymorphisms in Saudi Arabian population in comparison with epidemiological studies by "MEDLINE" search to equate with global populations. The variant allelic (T) frequency of XRCC3 (C>T) was found to be 39%. Our results suggest that frequency of XRCC3 (C>T) DNA repair gene exhibits distinctive patterns compared with the Saudi Arabian population and this might be attributed to ethnic variation. The present findings may help in high-risk screening of humans exposed to environmental carcinogens and cancer predisposition in different ethnic groups.

Shunt Active Filter for Multi-Level Inverters Using DDSRF with State Delay Controller

  • Rajesh, C.R.;Umayal, S.P.
    • Journal of Power Electronics
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    • 제18권3호
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    • pp.863-870
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    • 2018
  • The traditional power control theories for the harmonic reduction methods in multilevel inverters are found to be unreliable under unbalanced load conditions. The unreliability in harmonic mitigation is caused by voltage fluctuations, non-linear loads, the use of power switches, etc. In general, the harmonics are reduced by filters. However, such devices are an expensive way to provide a smooth and fast response to secure power systems during dynamic conditions. Hence, the Decoupled Double Synchronous Reference Frame (DDSRF) theory combined with a State Delay Controller (SDC) is proposed to achieve a harmonic reduction in power systems. The DDSRF produces a sinusoidal harmonic that is the opposite of the load harmonic. Then, it injects this harmonic into power systems, which reduces the effect of harmonics. The SDC is used to reduce the delay between the compensation time for power injection and the generation of a reference signal. The proposed technique has been simulated using MATLAB and its reliability has been verified experimentally under unbalanced conditions.

버섯에 존재하는 다양한 dsRNA의 분자생물학적 연구 (Molecular characteristics of diverse dsRNAs in edible fungi)

  • 박윤정;신평균;장갑열;공원식;정종천;유영복
    • 한국버섯학회지
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    • 제8권2호
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    • pp.41-50
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    • 2010
  • Mycoviruses have been found in many fungal species including mushrooms. Double-stranded (ds) RNA genomes were common type in mycoviruses, but single-stranded (ss) RNA mycoviruses were also reported in some fungal species. Sequencing analysis using cDNA cloning experiments revealed that mycoviruses can be classified into several different virus families such as Totiviridae, Hypoviridae, Partitiviridae and Barnaviridae etc. Because the nucleotide sequence data that are available in these days are very limited in a number of mycoviruses, the existence of more diverse viral groups in fungi are currently expected. In this review, we selected four different fungal groups, which were considered as the model systems for mycovirus related studies in both plant pathogenic fungi and edible mushroom species, and discussed about their molecular characteristics of diverse mycoviruses. The plant pathogenic fungi introduced here were Cryphonectria parasitica and Helminthosporium victoriae and the edible mushroom species were Agaricus bisporus and Pleurotus ostreatus.

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Simple Screening Method for Double-strand DNA Binders Using Hairpin DNA-modified Magnetic Beads

  • Jo, Hun-Ho;Min, Kyoung-In;Song, Kyung-Mi;Ku, Ja-Kang;Han, Min-Su;Ban, Chang-Ill
    • Bulletin of the Korean Chemical Society
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    • 제32권1호
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    • pp.247-250
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    • 2011
  • We designed an effective screening method for double strand DNA (dsDNA) binders using DNA-modified magnetic particles. Hairpin DNA was immobilized on the surface of magnetic particle for a simple screening of dsDNA binding materials in a solution containing various compounds. Through several magnetic separation and incubation processes, four DNA-binding materials, DAPI, 9AA, AQ2A, and DNR, were successfully screened from among five candidates. Efficiency of screening was demonstrated by HPLC analysis using a C2/18 reverse-phase column. In addition, their relative binding strengths were verified by measuring the melting temperature ($T_m$). If hairpin DNA sequence is modified for other uses, this magnetic bead-based approach can be applied as a high-throughput screening method for various functional materials such as anti-cancer drugs.