• Journal of the Korea Society for Simulation
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• v.17 no.1
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• pp.17-22
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• 2008

Double-binary turbo code has been adopted as an error control code of various future communication systems including wireless metropolitan area networks(WMAN) due to its powerful error correction capability. One of the components affecting the performance of turbo code is internal interleaver. In 802.16 d/e system, an almost regular permutation(ARP) interleaver has been included as a part of specification, however it seems that the interleaver is not optimized in terms of decoding performance. In this paper, we propose three optimization methods for the interleaver based on spatial distance, spread and minimum distance between original and interleaved sequence. We find optimized interleaving parameters for each optimization method and evaluate the performances of the proposed methods by computer simulation under additive white Gaussian noise(AWGN) channel. Optimized parameters can provide up to 1.0 dB power gain over the conventional method and furthermore the obtainable gain does not require any additional hardware complexity.

• Journal of the Korea Academia-Industrial cooperation Society
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• v.10 no.6
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• pp.1337-1345
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• 2009

In the railway, the delay of a train may affect the schedule of other trains. Hence, the timetable management activity involving overtaking and transferring becomes an important issue. The timetable rescheduling is the conflict resolution of the disrupted schedule and a matter of deciding the sequence of moves among trains and the place for meeting. In Korea, there are few cases where operations research models were applied to railway timetable rescheduling problem in consideration of the transfer between Korea Train eXpress (KTX) trains and conventional trains. Hence, we present a mathematical approach that can minimize the total delay of the whole trains secondly. We applied the model to the exemplary section of a double-line track, the Gyung-Boo Line, and it is confirmed that the mathematical model could effectively address the transfer service as well as the complicated railway conflicts of Gyung-Boo Line.

• Journal of the Korean Institute of Telematics and Electronics S
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• v.36S no.9
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• pp.9-17
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• 1999

In this paper, we present a mathematical modeling and perform a performance analysis of double-dwell serial search algorithm, which has a search window concept, for pilot channel in DS-CDMA(Direct Sequence Code Division Multiple Access). We derive a code detection function, a false alarm function, a code miss function, and a mean code acquisition time for the performance analysis. We calculate the mean code acquisition time of the mathematical model in IS-95 forward link and compare it with that of the conventional search methods. The performance of the code acquisition system is also evaluated to investigate the effect of dwell times and search window size. The JTC channel model, which is a PCS channel model in North America, is used for the analysis. The numerical result shows that the mean code acquisition time of the double-dwell serial search algorithm with a search window is reduced by about 17%~25% than those of the conventional ones.

• BMB Reports
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• v.28 no.6
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• pp.509-514
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• 1995

A putative secondary structure of the mRNA for the human hepatitis B virus (HBV) X gene is proposed based on not only chemical and enzymatic determination of its single- and double-stranded regions but also selection by the computer program MFOLD for energy minimum conformation under the constraints that the experimentally determined nucleotides were forced or prohibited to base pair. An RNA of 536 nucleotides including the 461-nucleotide HBV X mRNA sequence was synthesized in vitro by the phage T7 RNA polymerase transcription. The thermally renatured transcripts were subjected to chemical modifications with dimethylsulfate and kethoxal and enzymatic hydrolysis with single strand-specific RNase T1 and double strand-specific RNase V1, separately. The sites of modification and cleavage were detected by reverse transcriptase extension of 4 different primers. Many nucleotides could be assigned with high confidence, twenty in double-stranded and thirty-seven in Single-stranded regions. These nucleotides were forced and prohibited, respectively, to base pair in running the recursive RNA folding program MFOLD. The results suggest that 6 different regions (5 within X mRNA) of 14~23 nucleotides are Single-stranded. This putative structure provides a good working model and suggests potential target sites for antisense and ribozyme inhibitors and hybridization probes for the HBV X mRNA.

• Journal of Microbiology
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• v.37 no.4
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• pp.248-255
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• 1999

We have analyzed the MRE3/REC114 gene of Saccharomyces cerevisiae, previously detected in isolation of mutants defective in meiotic recombination. We cloned the MRE3/REC114 gene by complementation of the meiotic recombination defect and it has been mapped to chormosome XIII. The DNA sequence analysis revealed that the MRE3 gene is identical to the REC114 gene. The upstream region of the MRE3/REC114 gene contains a T_4C site, a URS (upstream repression sequence) and a TR (T-rich) box-like sequence, which reside upstream of many meiotic genes. Coincidentally, northern blot analysis indicated that the three sizes of MRE3/REC114 transcripts, 3.4, 1.4 and 1.2 kb, are induced in meiosis. A less abundant transcript of 1.4 kb is detected in both mitotic and meiotic cells, suggesting that it is needed in mitosis as well as meiosis. To examine the role of the MRE3/REC114 gene, we constructed mre3 disruption mutants. Strains carrying an insertion or null deletion of the MRE3/REC114 gene showed slow growth in nutrient medium and the doubling time of these cells increased approximately by 2-fond compared to the wild-type strain. Moreover, the deletion mutant (${\delta}$mre3) displayed no meiotically induced recombination and no viable spores. The mre3/rec114 spore lethality can be suppressed by spo13, a mutation that causes cells to bypass reductional division. The double-stranded breaks (DSBs) which are involved in initiation of meiotic recombination were not detected in the analysis of meiotic chromosomal DNA from the mre3/rec114 disruptant. From these results we suggest that the MRE3/REC114 gene product is essential in normal growth and in early meiotic stages involved in meiotic recombination.

• Molecules and Cells
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• v.23 no.3
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• pp.304-315
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• 2007

Fusarium graminearum causes a serious scab disease of small grains in Korea. The nucleotide sequence of the genomic RNA of a double-stranded RNA (dsRNA) virus, Fusarium graminearum virus-DK21 (FgV-DK21), from F. graminearum strain DK21, which is associated with hypovirulence in F. graminearum, was determined and compared to the genome sequences of other mycoviruses, including Cryponectria hypoviruses. The FgV-DK21 dsRNA consists of 6,624 nucleotides, excluding the 3'-terminal poly(A) tail. The viral genome has 53- and 46-nucleotide 5' and 3' untranslated regions (UTRs), respectively, and five putative open reading frames. A phylogenetic analysis of the deduced amino acid sequence of ORF1, which encodes a putative RNA-dependent RNA polymerase, and those of other mycoviruses revealed that this organism forms a distinct virus clade with other hypoviruses, and is more distantly related to other mycoviruses (3.8 to 24.0% identity). However, pairwise sequence comparisons of the nucleotide and deduced amino acid sequences of ORFs 2 through 5 revealed no close relationships to other protein sequences currently available in GenBank. Analyses of RNA accumulation by Northern blot and primer extension indicated that these putative gene products are expressed from at least two different subgenomic RNAs (sgRNAs), in contrast to the cases in other hypoviruses. This study suggests the existence of a new, as yet unassigned, genus of mycoviruses that exhibits a potex-like genome organization and sgRNA accumulation.

• Research in Plant Disease
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• v.30 no.2
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• pp.157-164
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• 2024

Jack bean (Canavalia ensiformis) is one of healthy products for fermented or functional food in Korea and is widely distributed and cultivated worldwide. During August 2022, Jack bean plants showing symptoms of yellow flecks, chlorosis, necrotic spots and mosaic were observed in Jangheung-gun, South Korea. By transmission electron microscopy, flexuous filamentous virus particles of approximately 750×13 nm in size were observed in the symptomatic leaf samples. The infection of a Korean isolate of clover yellow vein virus (ClYVV-Ce-JH) was confirmed using double antibody sandwich enzyme-linked sorbent assay, reverse transcription polymerase chain reaction and high-throughput sequencing. The complete genome sequence of ClYVV-Ce-JH consists of 9,549 nucleotides (nt) excluding the poly (A) tail and encodes 3,072 amino acids (aa), with an AUG start and UAG stop codon, containing one open reading frame that is typical of a potyvirus polyprotein. The polyprotein of ClYVV-Ce-JH was divided into ten proteins and each protein's cleavage sites were determined. The coat protein (CP) and polyprotein of ClYVV-Ce-JH were compared at the nt and aa levels with those of the previously reported 14 ClYVV isolates. ClYVV-Ce-JH shared 92.62% to 99.63% and 93.39% to 98.05% at the CP and polyprotein homology. To our knowledge, this is the first report of a Korean isolate of ClYVV from Jack bean plants and the complete genome sequence of a ClYVV Jack bean isolate in the world.

• Journal of The Korean Society of Grassland and Forage Science
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• v.25 no.4
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• pp.233-238
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• 2005

This experiment was conducted from 2002 to 2004 at paddy field of National Livestock Research Institute, RDA, Suwon to investigate the select the promising double cropping system on growth, yield and nutritive value of summer forage(silage corn, sorghum$\times$ sudangrass hybrid, japanese millet, jobs tear, rice) and winter forage(rye, barley, Italian ryegass) and also to determine the best double cropping system necessary to maximize the total forage yield of winter forages plus summer forage crops. Among agronomic characteristics, lodging tolerance appeared to be highest in the summer forage crop including silage corn, jobs tear and rice compared to other forage crops. And lodging tolerance appeared to be highest in the winter forage crop including barley compared to rye and Italian ryegrass. The highest dry matter yield of 27,766 kg/ha, 27,296 kg/ha and 25,365 kg/ha obtained from an whole crop barley+sorghum$\times$ sudangrass hybrid, rye+sorghum$\times$ sudangrass hybrid and Italian ryegrass+sorghum$\times$sudangrass hybrid double cropping sequence in combination among the fifteen cropping systems((P<0.05). And dry matter yield of barley+silage corn and rye+silage com were 23,766 and 23,572 kg/ha.

• Journal of the Korean institute of surface engineering
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• v.34 no.2
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• pp.105-114
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• 2001

$Al_2$$O_3$ coatings were deposited on M2 high speed steels by the plasma enhanced chemical vapor deposition (PECVD) process, using a gas mixture of AlC1$_3$, $H_2$, $CO_2$ and Ar $Al_2$$O_3$ coatings had interference color and showed amorphous phase. $A1_2$X$A1_3$/($Ti_{0.5}$ /$Al_{0.5}$ )N double layer coatings were produced in the sequence of substrate $NH_3$ plasma pretreatment, ($Ti_{0.5}$$Al_{0.5}$)N depoition process, $Al_2$$O_3$ deposition process. $Al_2$ $O_3$/( $Ti_{0.5}$A $l_{0.5}$)N double layer coatings showed NaCl structure in ( $Ti_{0.5}$A $l_{0.5}$)N layer and amorphous phase in A1$_2$ $O_3$ layer. It was shown that $Al_2$ $O_3$ columns continuously grew onto ( $Ti_{0.5}$A $l_{0.5}$)N columns. ( $Ti_{0.5}$A $l_{0.5}$)N single coating and $Al_2$ $O_3$/( $Ti_{0.5}$A $l_{0.5}$)N double layer coating were oxidized at $700^{\circ}C$, 80$0^{\circ}C$, 90$0^{\circ}C$ for 1hr, 3hr in atmosphere. At 80$0^{\circ}C$, single layer coatings were oxidized, which were examined substrate oxide particle. But $Al_2$ $O_3$/ ( $Ti_{0.5}$A $l_{0.5}$)N double layer coatings maintained the asdeposited state. Therefore, $Al_2$ $O_3$/ ( $Ti_{0.5}$A $l_{0.5}$)N double layer coatings have moreexcellent oxidation resistance than ( $Ti_{0.5}$A $l_{0.5}$)N single layer coatings.X> 0.5/)N single layer coatings.s.

• Bulletin of the Korean Chemical Society
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• v.31 no.5
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• pp.1187-1191
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• 2010

$^1H-^{15}N$ heteronuclear dipolar coupling solid-state NMR experiments on lipid bilayer or bicelle samples are very useful for the structural studies of membrane proteins. However, to study these biological samples using solid-state NMR, a specific probe with high efficiency and high capability is required. In this paper, we describe the optimized design, construction, and efficiency of a 400 MHz wide-bore $^1H-^{15}N$ solid-state NMR probe with 5-mm solenoidal rf coil for high power, multi-pulse sequence experiments, such as 2D PISEMA or 2D SAMMY.