• Title/Summary/Keyword: distinct distances

Search Result 50, Processing Time 0.02 seconds

Detection of Polymorphism of Growth Hormone Gene for the Analysis of Relationship between Allele Type and Growth Traits in Karan Fries Cattle

  • Pal, Aruna;Chakravarty, A.K.;Bhattacharya, T.K.;Joshi, B.K.;Sharma, Arjava
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.17 no.10
    • /
    • pp.1334-1337
    • /
    • 2004
  • The present study was conducted to detect polymorphism at growth hormone gene in Karan Fries bulls. A 428 bp fragment of growth hormone gene spanning over $4^{th}$exon, $4^{th}$intron and $5^{th}$ exon was amplified and digested with AluI restriction enzyme to identify polymorphism at this locus. Karan Fries bulls were found to be polymorphic at this locus. Two genotypes LL and LV were identified in Karan Fries with higher allelic frequency for L allele. In Karan Fries males, the average birth weight, 3 months body weight and daily body weight gains of LL homozygotes were significantly higher than that of LV heterozygotes. Genetic distances of KF bulls with respect to genotype along with 3 months body weight and average daily body weight gain forms a single cluster of bulls with LL genotype, while individuals with LV genotype forms three distinct clusters indicating more influence of L allele on growth traits.

The Duration and H/V ratio of the Ground Motion in Southern Korea (남한 지진의 지속시간과 H/V 비율)

  • 최호선;박창업;조남대
    • Proceedings of the Earthquake Engineering Society of Korea Conference
    • /
    • 2002.03a
    • /
    • pp.42-50
    • /
    • 2002
  • The duration and H/V ratio(the amplitude ratio of the horizontal to vertical components) of ground motions caused by earthquakes in southern Korea are analyzed. Total 329 seismograms of horizontal component recorded at hypocentral distances of 10 to 350 km from 27 earthquakes with local magnitude 2 to 4 are used for the analysis. Simplified relation between the duration of ground motion( $T_{d}$) and the ratio($\chi$) of Arias intensity( $I_{A}$) and squared maximum acceleration($\alpha$$_{max}$$^{2}$) is determined to be $T_{d}$ = 3.423$\chi$$^2$+ 8.200$\chi$ + 0.029, which is useful for the estimation of the duration in southern Korea. There are three distinct distance ranges with different linear variations of the duration in hypocentral distance. They are distance intervals of 10~80km, 80~140km, and the distance greater than 140km. The duration in southern Korea shows clear proportionality to the local magnitude at magnitudes greater than 3.1. The value 1.37 of the H/V ratio obtained in southern Korea is similar to the value 1.4 of ENA(Eastern North America). The H/V ratio in southern Korea increases in the frequency range from 0.3 to 10Hz. The duration and H/V ratio of ground motions derived in this study could be used in the stochastic simulation of strong ground motion.ion.n.n.

  • PDF

Classification of Ambient Particulate Samples Using Cluster Analysis and Disjoint Principal Component Analysis (군집분석법과 분산주성분분석법을 이용한 대기분진시료의 분류)

  • 유상준;김동술
    • Journal of Korean Society for Atmospheric Environment
    • /
    • v.13 no.1
    • /
    • pp.51-63
    • /
    • 1997
  • Total suspended particulate matters in the ambient air were analyzed for eight chemical elements (Ca, Co, Cu, Fe, Mn, Pb, Si, and Zn) using an x-ray fluorescence spectrometry (XRF) at the Kyung Hee University - Suwon Campus during 1989 to 1994. To use these data as basis for source identification study, membership of each sample was selected to represent one of the well defined sample groups. The data sets consisting of 83 objects and 8 variables were initially separated into two groups, fine (d$_{p}$<3.3 ${\mu}{\textrm}{m}$) and coarse particle groups (d$_{p}$>3.3 ${\mu}{\textrm}{m}$). A hierarchical clustering method was examined to obtain possible member of homogeneous sample classes for each of the two groups by transforming raw data and by applying various distances. A disjoint principal component analysis was then used to define homogeneous sample classes after deleting outliers. Each of five homogeneous sample classes was determined for the fine and the coarse particle group, respectively. The data were properly classified via an application of logarithmic transformation and Euclidean distance concept. After determining homogeneous classes, correlation coefficients among eight chemical variables within all the homogeneous classes for calculated and meteorological variables (temperature. relative humidity, wind speed, wind direction, and precipitation) were examined as well to intensively interpret environmental factors influencing the characteristics of each class for each group. According to our analysis, we found that each class had its own distinct seasonal pattern that was affected most sensitively by wind direction.ion.

  • PDF

Relation between lineament and well productivity (지질구조선과 지하수 산출성간의 상관성 평가)

  • Kim Gyu-Beom;Lee Gang-Geun;Lee Jang-Ryong
    • Proceedings of the Korean Society of Soil and Groundwater Environment Conference
    • /
    • 2005.04a
    • /
    • pp.85-89
    • /
    • 2005
  • Lineament maps are the important tools that may reveal points of groundwater recharge, flow and development. In particular, groundwater flows and yields in mountainous area, composed of crystalline rocks with many fractures, are governed mainly by the lineaments corresponding to fractures, joints and faults. Lineaments may give important information on the best distribution of wells and their management. For two districts; Pohang and Cheonan, the relationship between lineament and groundwater factors was analyzed. To compare groundwater productivity, storativity, and transmissivity of a well site along the distance to lineament, the distances to lineament was regrouped into five groups with an equal range, 100m, for the Pohang district and they are also divided into five groups with an equal range, 150m, for the Cheonan district. From the results of the Spearman Rank Correlation Analysis and Kendall Analysis for each group, the means of SPC and T of wells which are located near lineaments generally have large values. The means of SPC and T show a reverse linear relationship with a lineament distance, but the means of S shows a disperse distribution and no distinct linear relation. Result of the linear regression model between SPC and lineament length density shows that it will be effective to use the lineament length density map when finding the optimal well site on a regional scale.

  • PDF

Genetic Relationships among Six Korean Rana Species (Amphibia; Ranidae) Based on the Mitochondrial Cytochrome b Gene

  • Lee, Jung-Eun;Yang, Suh-Yung;Lee, Hei-Yung
    • Animal cells and systems
    • /
    • v.4 no.2
    • /
    • pp.117-121
    • /
    • 2000
  • Genetic relationships among six species of the genus Rana from Korea were investigated by complete nucleotide sequence analyses of mitochondrial cytochrome b gene (1143 bp). Based on Kimura-2-parameter distance, the interspecific sequence differences of cytochrome b gene within the genus Rana were ranged from 7.83% to 25.00%. The genetic distances were 7.83% between R. nigromaculata and R. plancyi, 8.47% between two types of R. rugosa (type A and B), 10.42% between the brown frogs (R. amurensis and R. dybowskii), 16.11% between R. dybowskii types 1 and 2 and 12.36% between pond frogs (R. nigromaculata and R. plancyi) and R. catesbeiana. In the neighbor-joining and parsimony trees, R. catesbeiana was more closely related to pond frogs than brown frogs. R. dybowskii types 1 and 2 were considered to be at a distinct and specific level of differentiation (16.11%), while two types of R. rugosa were suspected to be at a subspecific level (8.47%).

  • PDF

A Basic Study on Landscape Plants as Attenuator of Vehicular Noise(I) (造景植物의 道路交通騷音 減衰機能에 關한 基礎硏究(I))

  • Kook, Chan;Kim, Sun-Woo;Sim, Woo-Kyung
    • Journal of the Korean Institute of Landscape Architecture
    • /
    • v.18 no.3 s.39
    • /
    • pp.1-9
    • /
    • 1990
  • Landscape plants as attenuator of vehicular noise were basically experimented with 8 kinds of trees and shrubs at the university nursery, and checked the attenuating effects by the planted distances, species and sound frequencies. The experimental results are shown and sumarized as follows ; 1. Most plants showed the considerable noise attenuating function in the sound frequencies of 63Hz and 1,000Hz. Tall trees such as Juniperus chinensis var. kaizuka and Magnolia grandiflora showed better effects than shrubs or small trees such as Gardenia jasminoides, Osmanthus fragnance, Osmanthrs heterophyllus, Rhododendron indicum, Chamaecyparis obtusa 'Tetragona Aurea' and Pinus paruiflora in 63Hz frequency, but shrubs showed better effects in 1,000Hz. 2. Trees showed 6~8dB attenuation and shrubs 4~5dB regardless an increase of distance between sound source and receiver in 63Hz. 10 meter width of tree belt could reduce 10 more dB, but 5 meter of shrub belt showed the same effect in 1,000Hz. 3. Trees having more leaves and wider crown showed constantly increase of attenuation of sound by the distance in 1,000Hz, and distinct increase of attenuation were observed in 2,000 more Hz.

  • PDF

ON ERDŐS CHAINS IN THE PLANE

  • Passant, Jonathan
    • Bulletin of the Korean Mathematical Society
    • /
    • v.58 no.5
    • /
    • pp.1279-1300
    • /
    • 2021
  • Let P be a finite point set in ℝ2 with the set of distance n-chains defined as ∆n(P) = {(|p1 - p2|, |p2 - p3|, …, |pn - pn+1|) : pi ∈ P}. We show that for 2 ⩽ n = O|P|(1) we have ${\mid}{\Delta}_n(P){\mid}{\gtrsim}{\frac{{\mid}P{\mid}^n}{{\log}^{\frac{13}{2}(n-1)}{\mid}P{\mid}}}$. Our argument uses the energy construction of Elekes and a general version of Rudnev's rich-line bound implicit in [28], which allows one to iterate efficiently on intersecting nested subsets of Guth-Katz lines. Let G is a simple connected graph on m = O(1) vertices with m ⩾ 2. Define the graph-distance set ∆G(P) as ∆G(P) = {(|pi - pj|){i,j}∈E(G) : pi, pj ∈ P}. Combining with results of Guth and Katz [17] and Rudnev [28] with the above, if G has a Hamiltonian path we have ${\mid}{\Delta}_G(P){\mid}{\gtrsim}{\frac{{\mid}P{\mid}^{m-1}}{\text{polylog}{\mid}P{\mid}}}$.

Correlation Distance Based Greedy Perimeter Stateless Routing Algorithm for Wireless Sensor Networks

  • Mayasala, Parthasaradhi;Krishna, S Murali
    • International Journal of Computer Science & Network Security
    • /
    • v.22 no.1
    • /
    • pp.139-148
    • /
    • 2022
  • Research into wireless sensor networks (WSNs) is a trendy issue with a wide range of applications. With hundreds to thousands of nodes, most wireless sensor networks interact with each other through radio waves. Limited computational power, storage, battery, and transmission bandwidth are some of the obstacles in designing WSNs. Clustering and routing procedures have been proposed to address these concerns. The wireless sensor network's most complex and vital duty is routing. With the Greedy Perimeter Stateless Routing method (GPSR), an efficient and responsive routing protocol is built. In packet forwarding, the nodes' locations are taken into account while making choices. In order to send a message, the GPSR always takes the shortest route between the source and destination nodes. Weighted directed graphs may be constructed utilising four distinct distance metrics, such as Euclidean, city block, cosine, and correlation distances, in this study. NS-2 has been used for a thorough simulation. Additionally, the GPSR's performance with various distance metrics is evaluated and verified. When compared to alternative distance measures, the proposed GPSR with correlation distance performs better in terms of packet delivery ratio, throughput, routing overhead and average stability time of the cluster head.

Refinement of protein NMR structures using atomistic force field and implicit solvent model: Comparison of the accuracies of NMR structures with Rosetta refinement

  • Jee, Jun-Goo
    • Journal of the Korean Magnetic Resonance Society
    • /
    • v.26 no.1
    • /
    • pp.1-9
    • /
    • 2022
  • There are two distinct approaches to improving the quality of protein NMR structures during refinement: all-atom force fields and accumulated knowledge-assisted methods that include Rosetta. Mao et al. reported that, for 40 proteins, Rosetta increased the accuracies of their NMR-determined structures with respect to the X-ray crystal structures (Mao et al., J. Am. Chem. Soc. 136, 1893 (2014)). In this study, we calculated 32 structures of those studied by Mao et al. using all-atom force field and implicit solvent model, and we compared the results with those obtained from Rosetta. For a single protein, using only the experimental NOE-derived distances and backbone torsion angle restraints, 20 of the lowest energy structures were extracted as an ensemble from 100 generated structures. Restrained simulated annealing by molecular dynamics simulation searched conformational spaces with a total time step of 1-ns. The use of GPU-accelerated AMBER code allowed the calculations to be completed in hours using a single GPU computer-even for proteins larger than 20 kDa. Remarkably, statistical analyses indicated that the structures determined in this way showed overall higher accuracies to their X-ray structures compared to those refined by Rosetta (p-value < 0.01). Our data demonstrate the capability of sophisticated atomistic force fields in refining NMR structures, particularly when they are coupled with the latest GPU-based calculations. The straightforwardness of the protocol allows its use to be extended to all NMR structures.

Genetic Distances for Intra- and Between-Group of Scapharca subcrenata from Yeosu of the Korea

  • Yoon, Jong-Man
    • Development and Reproduction
    • /
    • v.25 no.4
    • /
    • pp.305-311
    • /
    • 2021
  • The oligonucleotides polymers (ON-polymers) were used producing a total of 110 loci unique to each clam population (LUECP) in group one and 132 in group two, respectively, varying in amount of DNA fragments (FRs) from greater than near 50 to a smaller quantity than 1,050 bp. The larger FR amounts (>1,050 bp) are not noticed in the two Scapharca subcrenata groups. The ON-polymer OPD-01 produced 33 LUECP, which were defining each group, almost 300 bp, 450 bp, and 500 bp, in the group one. The OPD-15 recognized 22 loci shared by the two clam populations (Loci shared by the two clam populations, LSTCP), a variety of FRs of sizes 300 bp that were equivalent in all specimens. The mean number of LUECP was varied and 1.2-fold greater in the shellfish group two than in the group one. Respecting mean bandsharing (BS) grade outcomes, entities in the shellfish group one (0.779±0.011) had a little higher BS grades than did entities from the group two (0.756±0.009) (p<0.05). The entities of the shellfish group one are not tightly gathered with other entities of the group two. The genetic distance (GD) (0.422) of this invertebrate (SUBCRENATA 02 and 01) is 7.41-fold hereditarily distinct to the GD (0.057) of the other invertebrate (SUBCRENATA 22 and 19). The polar dendrogram (PDG) procured by the five ON-polymers underlines two characteristic groups.