• Title/Summary/Keyword: design plot

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Virtual Screening of Tubercular Acetohydroxy Acid Synthase Inhibitors through Analysis of Structural Models

  • Le, Dung Tien;Lee, Hyun-Sook;Chung, Young-Je;Yoon, Moon-Young;Choi, Jung-Do
    • Bulletin of the Korean Chemical Society
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    • v.28 no.6
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    • pp.947-952
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    • 2007
  • Mycobacterium tuberculosis is a pathogen responsible for 2-3 million deaths every year worldwide. The emergence of drug-resistant and multidrug-resistant tuberculosis has increased the need to identify new antituberculosis targets. Acetohydroxy acid synthase, (AHAS, EC 2.2.1.6), an enzyme involved in branched-chain amino acid synthesis, has recently been identified as a potential anti-tuberculosis target. To assist in the search for new inhibitors and “receptor-based” design of effective inhibitors of tubercular AHAS (TbAHAS), we constructed four different structural models of TbAHAS and used one of the models as a target for virtual screening of potential inhibitors. The quality of each model was assessed stereochemically by PROCHECK and found to be reliable. Up to 89% of the amino acid residues in the structural models were located in the most favored regions of the Ramachandran plot, which indicates that the conformation of each residue in the models is good. In the models, residues at the herbicide-binding site were highly conserved across 39 AHAS sequences. The binding mode of TbAHAS with a sulfonylurea herbicide was characterized by 32 hydrophobic interactions, the majority of which were contributed by residue Trp516. The model based on the highest resolution X-ray structure of yeast AHAS was used as the target for virtual screening of a chemical database containing 8300 molecules with a heterocyclic ring. We developed a short list of molecules that were predicted to bind with high scores to TbAHAS in a conformation similar to that of sulfonylurea derivatives. Five sulfonylurea herbicides that were calculated to efficiently bind TbAHAS were experimentally verified and found to inhibit enzyme activity at micromolar concentrations. The data suggest that this time-saving and costeffective computational approach can be used to discover new TbAHAS inhibitors. The list of chemicals studied in this work is supplied to facilitate independent experimental verification of the computational approach.

The Effect of Nitrogen Application and Clipping Interval on the Characteristics of Several Turf Components of Korean Lawn Grass (Zoysia japonica Steud.) (질소시용 및 예초간격이 한국 잔디(Zoysia japonica Steud.)의 제잔디 구성요소 특성변화에 미치는 영향)

  • 심재성;윤익석
    • Asian Journal of Turfgrass Science
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    • v.1 no.1
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    • pp.18-29
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    • 1987
  • This study was carried out to examine the effect of nitrogen application and clipping interval on the characteristics of several turf components of korean lawngrass for the basic data of lawn management. It was treated by Split plot design with three replications. The main plots were nitrogen levels with 0, 350, and 700kgN / ha, and the sub plots were clipping intervals with 10, 20, and 30 days The results obtained are summarized as follows ; 1. Increasing the rate of nitrogen fertilizer and frequent clipping increased tiller number of korean lawngrass and the maximum number of tillers obtained in October were recorded from 700kgN application and clipping treatment of 10 days interval. Meanwhile, treatment of 350kgN with 10 days clipping interval increased tillers much more than those of 700kgN with 20 and 30 days clipping intervals. 2. The average number of green leaves occurred during the growth period maximized by applying 700 kgN and clipping 10 days interval. 3. Increasing tiller numbers significantly decreased tops DM weight per tiller by clippng plants at interval of 10 and 20 days, irrespective of nitrogen applied, and with nil N, at the interval of 30 days. By applying 700kgN however, tops DM weight per tiller increased as the number of tillers increased consistently. 4. The highest tops DM weight was achieved from late August to early September by applying 350 and 700kgN. 5. During the growth period, nitrogen application increased unders(stolon+root) DM weight, and, at the same level of nitrogen applied, the increase in stolon DM weight enhanced by lengthening the clipping interval to 30 days. 6. Nitrogen efficiency to green leaves, stolon nodes and DM weight of root with high nitrogen was achieved as clipping interval was shortened.

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Comparison of Productivity of Various Silage Corn Varieties II. Chemical composition and nutrient yield of different part of silage corns (Silage용 옥수수의 품종별 생산성 비교 Il. 옥수수 부위별 조성분 함량 및 영양소 생산성)

  • 김병호;문여황;신정남
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.12 no.3
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    • pp.185-192
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    • 1992
  • This experiment was conducted to compare the productivity of five silage corn varieties. Corn varieties were Pioneer 3144(P 3144), 3160(P 3160), 3282(P 3282), 3352(P 3352) and Suweon 19(S 19) and were seeded on May 2 and harvested on August 15. Ratios of stalk, leaf and ear, chemical composition and yields of nutrients were investigated in respective corn part. Experimental design was accepted by Latin square arrangement with five replicates and each plot had twenty two plants. The results obtained were as follows: 1. Crude portein, crude ash and nitrogen free extract(NFE) contents of whole plant ranged from 6.32 to 7.18%, 5.16 to 7.43% and 52.62 to 57.90%, respectively, and there were no significant(P>.Ol) differences between varieties. Crude protein and NFE content were the highest in ear between corn parts. 2. Crude fiber conent of whole plant ranged from 18.98 % to 24.01 %, and was the highest in suweon 19 and the lowest in P 3352(P<.01). Crude fiber content was the highest in stem and the lowest in ear, However, crude fat content(2.03-3.66 %) vice versa. 3. Yields of organic matter, crude protein, crude fat, NFE and TDN per 10a were the greatest(P< .01) in P 3282, however crude fiber yield was the highest(P<.Ol) in P 3352. 4. Ratios of different part to total dry matter yield ranged from 12.7 %(P 3352) to 17.8 %(P 3160) for leaf, 44.5(P 3352) to 66.9 %(P 3160) for stem and husks, and 16.9 %(P 3282) to 42.8 %(P 3352) for ear, and there were significant differences between corn varieties(P<.Ol). Consequently, P 3352 has the greatest nutrient yields, particularly by ear, and P 3282 has a great nutrient yield by stem. This result suggested that could be appear a better character of silage corn by hybridization of this two corn varieties.

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Effect of Mix Ingredients on Modulus of Elasticity of High-Strength Concrete (고강도 콘크리트의 탄성계수에 미치는 배합재료의 영향평가)

  • 장일영;박훈규;이승훈;김규동
    • Journal of the Korea Concrete Institute
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    • v.14 no.1
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    • pp.67-75
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    • 2002
  • For the design of concrete structures in the serviceability limit state, the uniaxial static modulus of elasticity may be a most important parameter. In particular, this may be so just for a deflection control of the structure. Even in new concrete codes, however, the elastic modulus is normally presented on the form of general empirical relationships with the compressive strength and density of concrete. Normally, there is a large uncertainty associated with the general equations obtained by regression. Thus, in a typical plot of static modulus of elasticity vs. compressive strength, a large scatter can be observed at same strength. The aim of this study is to present the method for obtain the maximum modulus of elasticity at same compressive strength. In the present paper report the effects of mix ingredients on the modulus of elasticity of high-strength concrete. The test of 284 cylinder specimens arc conducted for type I with 11 % replacement of fly-ash cement concretes. Different water-hinder ratio, amounts of water and coarse aggregate as variables were investigated. And also analyzed it statistically by using SAS.

Responses of Soybean Genotypes to Different Levels of Irrigation

  • Rabbani, M.F.;Ashrafuzzaman, M.;Hoque, A.M.;Karim, M.Abdul
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.49 no.2
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    • pp.131-135
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    • 2004
  • To find out the responses of soybean genotypes in terms of different levels of irrigation with the aim of evaluating the growth, yield, and its optimum levels of irrigation, an experiment was conducted at the Field of Crop Botany Department, Bangladesh Agricultural University, Mymensingh during the period from November 2000 to February 2001. Five levels of irrigation viz. $\textrm{I}_0$: no irrigation, $\textrm{I}_1$: one time irrigation at 20 days after sowing (DAS), $\textrm{I}_2$:two times irrigation at 20 and 40 DAS, $\textrm{I}_3$: three times irrigation at 20, 40, and 60 DAS, and $\textrm{I}_4$: four times irrigation at 20, 40, 60, and 80 DAS and three genotypes of soybean viz. BS-3, BS-16, and BS-60 were used in this experiment. The crop was grown in a split plot design having three replications. The plant height, leaf area index, crop growth rate, shoot dry weight, branches $\textrm{plantI}_{-1}$, filled pods $\textrm{plantI}_{-1}$, seeds $\textrm{plantI}_{-1}$, seed yield, and harvest index were influenced significantly by irrigation and these were found to be highest at three times irrigation except branches $\textrm{plantI}_{-1}$. The chlorophyll content increased but empty pods $\textrm{plantI}_{-1}$ decreased with increase in irrigation levels. Genotypes of soybean varied significantly in terms of growth attributes at various growth stages except shoot dry weight at 90 DAS. The genotype BS-3 performed better compared to other genotypes and gave maximum seed yield.

Effects of Planting Dates and Mulch Types on the Growth, Yield and Chemical Properties of Waxy Corn Crosses $Sonjajang{\times}KNU-7$ and $Asan{\times}KNU-7$

  • Souvandouane, Souliya;Esguerra, Manuel;Heo, Kyu-Hong;Rico, Cyren M.;Lee, Sang-Chul
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.55 no.2
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    • pp.91-97
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    • 2010
  • The growth, yield and chemical properties of waxy corn $Sonjajang{\times}KNU-7$ and $Asan{\times}KNU-7$ planted in different dates and mulch types in a converted paddy field was investigated. Experiment was carried out in a randomized complete block design in a split split-plot arrangement with four replications. Planting dates (D) [May 16 (D1, early), June 1 (D2, middle), June 6 (D3, late)] represented main plots, plastic mulch (M) [(BM, black mulch; TM, transparent mulch)] for subplots while waxy corn crosses [$Sonjajang{\times}KNU-7$ (‘Sonja’) and $Asan{\times}KNU-7$ (‘Asan’)] for sub-subplots. Results showed that D had a significant effect on growth characters except emergence, ear quality except ear diameter, and yield whereas M showed significant effect on growth characters only. Superior growth and ear quality performance were recorded in D1 and BM. In terms of crosses, ‘Sonja’ had better growth performance than ‘Asan’ regardless of D and M, but performed better at D1 and BM. Highest yield was obtained in D1 for BM (2,131 kg $10a^{-1}$) and TM (1,655 kg $10a^{-1}$) but no significant difference in the yield across V was recorded. In terms of starch and sugar contents, a decreasing trend was observed from D1 to D3 regardless of M and V.

Effect of some Different Cultivating Conditions on the Growth and Uptake of Phosphorus in Garlic Plants (Allium sativum L.) (마늘(Allium Sativum L.)에 있어서 몇가지 재배조건(栽培條件)이 생육(生育) 및 인산흡수(燐酸吸收)에 미치는 영향(響影))

  • Ahn, Hak-Soo
    • Applied Biological Chemistry
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    • v.11
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    • pp.167-171
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    • 1969
  • Gartic bulblets were planted to investigate the effect of some different cultivating conditions on the growth and bulb formation of the garlic plants (Allium sativum L.) Two different conditions namely perfect and imperect aerobic condition, and 3 different fertilizer levels was made. The split plot design was adopted for this experiment. 1) For the growth rate, under the imperfect aerobic condition, the plant height was more increased than that of perfect aerobic condition no relation to the fertilizer levels. 2) With respect to the fresh weight of garlic, the similar tendency to the growth rate was observed, but dry weight was did not. 3) The uptake of phosphorus was found to be increased in the imperfect condition. It could there be concluded that imperfect aerobic condition seems to be much favorable condition than the perfect aerobic condition to the development of garlic bulbs.

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Effects of Harvesting Date and Additives on the Quality of Fall Sown Oat ( Avena sativa L. ) Silage (수확시기 및 첨가제가 연맥 사일리지의 품질에 미치는 영향)

  • 이성철
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.18 no.2
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    • pp.157-162
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    • 1998
  • This experiment was carried out to investigate the effects of harvesting date and additives on the quality of fall sown oat(Avena sativa L.) silage at the department of animal resources science, college of life resources science, Woosuk University, Wanju &om August, 1997 to March, 1998. The experiment was arranged in a split plot design with three replications. The main plots consisted of the harvesting date such as 15 Oct., 23 Oct. and 2 Nov. and different additives as subplots(control, wheat bran, formic acid, lactic acid bacteria, and wilting). The results otained are summarized as follow : The fiesh and dry matter yield of oat were increased by harvesting date delayed, then fiesh and dry matter yield at 2 Nov. were highest as 36,733 and 7,29Okg/ha, respectively. The dry matter content of oat silage was increased significantly by harvesting date delayed(P< 0.05), and DM content of wheat bran and wilting treatment was high at every harvest date. The DM loss was lower in LAB, formic acid and wheat bran treatment, but on significant difference was found among harvesting date(P< 0.05). Average pH of silage harvested at 23 Oct. was lowest as 4.06, and the quality(CP, NDF, ADF, and IVMDM) of oat silage was decreased by harvesting date delayed. The content of acetic acid was no difference among harvesting date, but butyric acid was decreased and lactic acid was increased at 23 Oct. harvest. The result of this study indicate that oat harvested at booting-heading stage of maturity with wilting wheat bran, and LAB could be recommended as producing high quality of oat silage.

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Effects of harvest intervals and seeding rates on dry matter yield and nutritive value of alfalfa cultivars

  • Xu, Xuan;Min, Doohong;McDonald, Iryna
    • Journal of Animal Science and Technology
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    • v.63 no.5
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    • pp.1098-1113
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    • 2021
  • Maturation process of alfalfa (Medicago sativa L.) could be prevented by the reduction of lignin content in terms of conventional breeding or transgenic technology. Alfalfa could exhibit higher leaf/stem ratio, with a concern of yield loss. The objective of this study was to compare forage yield and nutritive value of low lignin alfalfa and two reference varieties subjecting to two harvest intervals and three seeding rates. The experimental design was a randomized complete block in a split-split plot arrangement with four replicates, where harvest intervals (28-day and 35-day) were assigned to whole plots, seeding rates were subplots, and varieties were sub-subplots. The weighted mean nutritive value was applied to two production years of 2016 and 2017. Hi-Gest 360 (low lignin alfalfa) provided similar yield potential and increased nutritive value compared to two reference varieties. Over a two-year production period, alfalfa harvested at every 28-day interval provided more economic returns than those at 35-day interval. For the seeding year and first production year, five cuts made by the 28-day interval produced more yield than four cuts by the 35-day interval. Due to limited rainfall in May 2017, a sharp drop of the first cutting overturned the advantage of the five-cut system. Shorter intervals between harvests generally increased crude protein (CP) concentrations. The differences of relative feed value (RFV) between two harvest intervals tended to be great during the first and second cuttings. Overall, harvest interval had a large effect on nutritive value and a more significant effect on alfalfa dry matter yield than variety selection. Seeding rate did not affect alfalfa yield and nutritive value.

Enhancing Seed Productivity and Feed Value of Oats (Avena sativa L.) with Different Seeding Rate and Nitrogen Fertilizing Levels in Gyeongbuk Area

  • Tomple, Byamungu Mayange;Hwan, Jo Ik
    • Journal of agriculture & life science
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    • v.52 no.6
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    • pp.61-72
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    • 2018
  • The aim of this present study was to investigate the impact of different seeding rate and nitrogen fertilizing levels on the seed yield and feed value of oats(Avena sativa L.) grown in Gyeongbuk area for two years. The experiment was arranged in split plot design with 3 main plots(100, 130 and 160 kg of seed/ha) and 4 subplots(0, 50, 70 and 90 kg N/ha), with 3 replicates. Heading, flowering, and maturing dates of oats sown in spring 2017, delayed by two days compared to that of spring 2016, and the plant height of spring 2017 were significantly shorter than that of spring 2016(18.1 ~ 23.4 cm). In addition, the highest number of stems and number of panicles according to different seeding rate and nitrogen fertilizing levels were achieved with the seeding rate of 160 kg/ha and 90 kg of N/ha in 2016 and 2017, respectively. In case of seed yield as affected by different seeding rate, the highest seed yield was achieved with a seeding rate of 130 kg/ha(p<0.05), and based on nitrogen fertilizing levels, the highest yield was obtained in 50 kg of N/ha compared to others. The crude fiber(CF), neutral detergent fiber(NDF) and total digestible nutrients(TDN) of oats cultivated and harvested in spring 2016 and 2017 according to different sowing rate were the highest in the seeding rate of 130 kg/ha. The crude protein(CP) content and total digestible nutrients(TDN) of 2016-2017 as influenced by nitrogen fertilizer levels were the highest in the nitrogen fertilizer level of 90 and 50 kg N/ha, respectively. In conclusion, the proper seeding rate and the optimal nitrogen fertilizing level in Gyeongju, Gyeongbuk province were considered to be the most appropriate in 130 kg/ha and 50 kg of N/ha, respectively.