• 한국환경과학회지
• /
• 제28권1호
• /
• pp.75-84
• /
• 2019

Cytochrome c oxidase subunit II gene(CO II gene) is subunit of cytochrome oxidase, which is complex IV of mitochondria electron transport system. It has been frequently used in molecular phylogenetic studies because the speed of its DNA variation is faster than that of nucleus. It is especially useful in phylogenetic study of molecular biology in insects. In this study, we cloned and sequenced CO II gene of mitochondria DNA from Rhabditidae family nematode. Our results showed that this gene is comprised of 696 base pairs(bp). In the analysis of similarity of this gene with other known genes of 14 species of nematodes in Rhabditida order, we identified that this gene has high similarity with that of Caenorhabditis briggsae(86.0%) and C. elegans(85.6%) in Rhabditidae family. On the meanwhile, it has very low similarity with that of Angiostrongylus cantonensis(31.8%) in Angiostrongylidae family and Metastrongylus salmi(31.6%) in Metastrongylidae family. Based on the results of this study, we suggest that this nematode is closely related with that of Caenorhabditis genus in Rhabditidae family.

• Fisheries and Aquatic Sciences
• /
• 제21권3호
• /
• pp.8.1-8.6
• /
• 2018

Desmarestia japonica (Phaeophyceae, Desmarestiales) was recently established from the Japanese ligulate Desmarestia and is morphologically similar to D. ligulata. This species has been reported only from Japan. However, the taxonomic reports based on additional regional distributions are needed to clarify this taxonomic entity and its species boundaries. Because Desmarestia species have restricted distributions in Korea, we reexamined herbarium specimens of D. ligulata deposited at the National Institute of Biological Resources (South Korea). To improve the amplification efficiency of the polymerase chain reaction and avoid contamination by the DNA of other organisms, we developed taxon-specific molecular markers suitable for DNA barcoding of Desmarestia species. Nuclear ribosomal small subunit RNA (18S rDNA) and mitochondrial cytochrome c oxidase 1 (cox1) regions were selected as target DNA. As a result, both were successfully isolated from herbarium specimens of D. japonica acquired over 10 years. These molecular markers provide useful genetic information for herbarium specimens for which conventional molecular analysis is challenging.

• 한국응용곤충학회:학술대회논문집
• /
• 한국응용곤충학회 2005년도 춘계 학술발표회
• /
• pp.188-188
• /
• 2005

• Parasites, Hosts and Diseases
• /
• 제42권3호
• /
• pp.129-135
• /
• 2004

We compared the DNA sequences of the genus Metagonimus: M. yokogawai, M. takahashii, and M. miyatai. We obtained 288 D1 ribosomal DNA (rDNA) and mitochondrial cytochrome c oxidase subunit I (mtCOI) fragments from the adult worms by PCR, that were cloned and sequenced. Phylogenetic relationships inferred from the nucleotide sequences of the 28S D1 rDNA and mtCOI gene. M. takahashii and M. yokogawai are placed in the same clade supported by DNA sequence and phylogenie tree analysis in 28S D1 rDNA and mtCOI gene region. The above findings tell us that M. takahashii is closer to M. yokogawai than to M. miyatai genetically. This phylogenetic data also support the nomination of M. miyatai as a separate species.

• Parasites, Hosts and Diseases
• /
• 제56권6호
• /
• pp.583-588
• /
• 2018

Although widely studied, the natural diversity of the hard tick is not well known. In this study, we collected 194 sequences from 67 species, covering 7 genera of hard tick. The 5' region of the mitochondrial cytochrome c oxidase subunit 1 region (586 bp) has been used to investigate intra- and inter-species variation and the phylogenetic tree of neighbor joining method has been used for assessment. As a result, by comparing the K2P-distance of intra- and interspecies, 30 samples (15.2%) shown that interspecies distance was larger than the minimum interspecfic distance. From the phylogenetic analysis, 86.8% (49) of the species were identified correctly at the genus level. On deeper analysis on these species suggested the possibility of presence cryptic species. Therefore, further work is required to delineate species boundaries and to develop a more complete understanding of hard tick diversity over larger scale.

• Animal Systematics, Evolution and Diversity
• /
• 제36권2호
• /
• pp.159-163
• /
• 2020

Parasesarma bidens(De Haan, 1835) has been designated as a marine protected species by the Act on conservation and management of marine ecosystems. This crab has been recorded only from Jeju-do and Geomun-do, Republic of Korea. In this study, we describe for the first time the mitochondrial cytochrome c oxidase subunit I(COI) sequences of P. bidens. The intra-specific genetic distance among the Korean populations and between the Korean and Chinese populations ranged from 0% to 0.9% and 1.9% to 2.7%, respectively. The inter-specific genetic distances among the four Parasesarma species ranged from 10.9% to 12.8%. The finding of this study will be helpful to better describe P. bidens using COI DNA barcodes and can be used as basic data for their restoration and conservation research.

• 식물병연구
• /
• 제26권1호
• /
• pp.53-56
• /
• 2020

2019년 5월, 잎 표면에서 적색 반점이 관찰되는 참소리쟁이를 충북 괴산군 인근 야산에서 채집하였다. 관찰된 병반의 앞면은 적색 및 황색의 병반이 관찰되었고, 뒷면에는 백색의 돌기가 관찰되었다. 다양한 현미경으로 자세하게 관찰한 결과, 돌기는 녹포자기로 확인되었으며, 많은 녹포자가 확인되었다. 녹포자는 구형 또는 난형이었고 19.0-24.4×19.0-24.5 ㎛의 크기를 가지면서 표면은 무사마귀형으로 관찰되었다. 계통학적 유연관계 분석을 위하여, large subunit rDNA 영역 및 cytochrome c oxidase subunit 3 (CO3) 유전자 영역을 이용하여 계통학적 유연관계를 분석한 결과, 참소리쟁이에서 관찰된 녹병균은 Puccinia pritzliana와 매우 근연한 관계를 가지고 있었다. 관찰된 기주, 포자세대, 형태 및 계통학적 유연관계 결과를 종합해 볼 때, 분석된 녹병균은 국내 미보고 녹병균인 P. phragmitis로 확인하였으며, 위 병원균에 의해 발생한 녹병을 참소리쟁이 잎녹병으로 제안하고자 한다.

• Parasites, Hosts and Diseases
• /
• 제51권2호
• /
• pp.197-201
• /
• 2013

A total of 16 Taenia multiceps isolates collected from naturally infected sheep or goats in Gansu Province, China were characterized by sequences of mitochondrial cytochrome c oxidase subunit 1 (cox1) gene. The complete cox1 gene was amplified for individual T. multiceps isolates by PCR, ligated to pMD18T vector, and sequenced. Sequence analysis indicated that out of 16 T. multiceps isolates 10 unique cox1 gene sequences of 1,623 bp were obtained with sequence variation of 0.12-0.68%. The results showed that the cox1 gene sequences were highly conserved among the examined T. multiceps isolates. However, they were quite different from those of the other Taenia species. Phylogenetic analysis based on complete cox1 gene sequences revealed that T. multiceps isolates were composed of 3 genotypes and distinguished from the other Taenia species.

• 생태와환경
• /
• 제52권3호
• /
• pp.221-230
• /
• 2019

섬진강 수계에 서식하는 누치(Hemibarbus labeo)의 미토콘드리아 DNA에서 cytochrome c oxidase subunit I(COI) 유전자를 발굴하고 누치속 Hemibarbus 및 잉어과(Cyprinidae) 내 계통유전학적인 위치를 확인하는 연구를 수행하였다. 발굴된 577 bp COI 시컨스의 다중배열 결과 섬진강산 누치들의 높은 염기서열 상동성을 보였다(99~100%). 우리나라에서 발견되는 누치속 3종에서 누치(H. labeo: HD1)와 어름치(H. mylodon)의 염기서열 유사성은 88.91%, 참마자 (H. longirostis)와는 88.81%이었다. 또한, H. maculatus, H. meditus, H. umbrifer, H. barbus는 각각 누치와의 염기서열 유사성이 98.97%, 97.20%, 96.87%, 98.85% 등으로 나타났다. 누치속 7종의 계통유전학적 분석결과 섬진강산 누치(H. labeo)들은 두개의 단계통 (clade)을 형성하는데 하나는 하동, 임실, 강진, 순창의 섬진강 누치들로만 이루어진 단계통, 다른 하나는 하동의 HD2, HD8, HD9와 국내 부산, 아산, 서울 등에서 채집 보고된 누치들과 단계통을 형성하였다. 잉어과 내 섬진강산누치(HD1)의 계통진화적 위치는 피라미(Zacco platypus)와는 진화적 거리가 0.143, 누치속 H. maculatus와는 0.006으로 나타났다. 또한 잉어과 28종 내 계통유전학적 위치는 모래무지아과(Gobioninae) 어류들이 포함된 그룹 I에 섬진강산 누치가 위치함을 확인하였다. 본 연구의 결과는 누치를 포함하는 잉어과 내 어류의 계통유전학적 비교와 환경오염에 따른 담수환경 모니터링을 위한 모델어류의 발굴연구에 주요한 유전적 정보를 제공할 것이다.

• 환경생물
• /
• 제33권2호
• /
• pp.177-181
• /
• 2015

Two marine isopods, Pentias hayi Richardson, 1904 and P. thompsoni Collinge, 1916 were verified as unrecorded species in South Korea. The genus Pentias is reported for the first time in South Korea. These two isopods were collected from Heuksan-do Island and Ulleung-do Island from South Korea, respectively. We provide descriptions of the diagnostic characteristics, illustrations of two species and their partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) for molecular characteristics.