• Title/Summary/Keyword: crop analysis

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Evaluation of Sequential Planting Method for Screening of Durable Resistance against Rice Blast in Rice Breeding Program

  • Goh, Jaeduk;Kim, Byoung-Ryun;Shin, Dong Bum;Kang, In Jeong;Lee, Bong Choon;Kang, Hang-Won;Han, Seong-Sook
    • Research in Plant Disease
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    • v.21 no.1
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    • pp.20-23
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    • 2015
  • A sequential planting method was developed to screen rice plants with durable resistance against rice blast in a short time, and applied for several years in Korean rice breeding program. In this study, we showed the advantages of a sequential planting method compared to other pathogenicity tests. The correlation analysis among three pathogenicity tests and other factors demonstrated that durable resistance depended on the average of diseased leaf area and the number of compatible pathogens. Significant correlations were found in the nursery test but not in the field test result. In addition, we traced changes in the pathogen population during sequential planting stages through re-isolation of the pathogen. The portion of compatible pathogens was increased during sequential planting. Through this study, we provide an effective sequential planting method and direction of durable resistance in a breeding program.

Detection of Soybean Mosaic Virus Using RT-PCR

  • Kim, Yul-Ho;Kim, Ok-Sun;Lee, Bong-Choon;Roh, Jae-Hwan;Kim, Myoung-Ki;Im, Dae-Joon;Hur, Il-Bong;Lee, Sang-Chul
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.44 no.3
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    • pp.253-255
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    • 1999
  • Reverse transcription and polymerase chain reaction (RT-PCR) assay was used to detect SMV strains. A pair of oligonucleotide primers were designed to include the cylindrical inclusion (CI) coding region between 4,176 to 5,560 nt. Amplification from the total RNA extracted from infected plants with SMV yielded a 1,385 bp DNA fragment. RT-PCR was shown to be $10^3$ times more sensitive than the ELISA assay and it could detect a virus in $10^{-6}$ dilution. Restriction enzyme analysis of RT- PCR products using EcoR I showed that SMV isolates were classified into six groups according to the patterns of restriction fragments.

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Analysis of Growth Response and Gene Expression by Waterlogging Stress on B73 Maize (침수 처리에 따른 B73 옥수수의 생육 반응 및 유전자 발현 분석)

  • Go, Young Sam;Kim, Jung-Tae;Bae, Hwan Hee;Son, Beom-Young;Yi, Gibum;Ha, Jun Young;Kim, Sun-Lim;Baek, Seong-Bum
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.65 no.2
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    • pp.104-112
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    • 2020
  • Maize is thought to be an alternative crop to rice in paddy fields for efficient field management and maintenance of rice production at appropriate levels in Korea. Thus efforts to breed waterlogging-tolerant maize cultivars have been ongoing. However, molecular studies related to waterlogging tolerance are limited for developing molecular markers to select waterlogging tolerant maize varieties. In this study, we examined molecular biological changes of B73 in the V3 stage after immersion treatment for 7 days. Overall growth of maize was lower in treated samples compared to non-immersed control samples. The length of leaf and root decreased by 21.3% and 50.6%, respectively and the weight of root reduced by 21.6%. Soil plant analysis development (SPAD) value and chlorophyll content of leaf also decreased by 55.7% and 35.3%, respectively. Reactive oxygen species (ROS) content of root increased by 46.5% at 2 hours in immersion treatment. In addition, immersed roots were 2.5-fold thickened with additional aerenchyma formation in the cortex. In order to identify the causes of these changes, we performed a microarray and found increased expression of genes, such as WIP1, PMIP2, EXPA1, TPS1, and MAS1, in immersed samples. These differentially expressed genes and expression of previously reported genes, including ALDH2, Wusl1032, UP-1, UP-2, and CAT2 were further confirmed with qRT-PCR. Here, we report 7 differentially expressed genes after immersing treatment, which may be utilized as useful resources for breeding waterlogging- tolerant maize.

Temperature-dependent Differences in Heading Response at Different Growth Stages of Rice

  • Lee, HyeonSeok;Choi, MyoungGoo;Lee, YunHo;Hwang, WoonHa;Jeong, JaeHyeok;Yang, SeoYeong;Lim, YeonHwa;Lee, ChungGen;Choi, KyungJin
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.64 no.3
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    • pp.213-224
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    • 2019
  • There is an increasing frequency in the occurrence of abnormal weather phenomena such as sharp increases and decreases in temperature. Under these weather conditions, the heading time of rice changes unexpectedly, which poses problems in agriculture. Therefore, we investigated the effect of temperature on the heading response at different growth stages in rice. During the period from transplanting to heading, the plants were subjected to different temperature treatments, each for a 9-day period, to observe the heading response. For the heading date analysis, "heading date" was defined as the number of days from transplanting to the appearance of the first spikelet. We found that the influence of temperature increased in the order of rooting stage, followed by meiosis, early tillering, spikelet differentiation, and panicle initiation stage in all ecological types and cultivars. In particular, unlike the results reported previously, the effect of temperature on heading during the photo-sensitive period was very small. Meanwhile, the influence of temperature on vegetative growth response at different growth stages was not consistent with heading response. These results can be used as basic data for predicting the variation in heading date owing to temperature variation at each growth stage. In addition, we propose that the concept of day length should be included in determining the influence of temperature on the photo-sensitive period.

Genetic Relationships of Panax Species by RAPD and ISSR Analyses

  • In, Dong-Su;Kim, Young-Chang;Bang, Kyong-Hwan;Chung, Jong-Wook;Kim, Ok-Tae;Hyun, Dong-Yoon;Cha, Seon-Woo;Kim, Tae-Soo;Seong, Nak-Sul
    • Korean Journal of Medicinal Crop Science
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    • v.13 no.5
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    • pp.249-253
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    • 2005
  • This study was carried out to develop convenient and reproducible methods for identifying the genetic relationship among germplasms of Panax species based on molecular genetics. Using random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) analyses, genetic polymorphism of the Panax species was investigated with following cultivars and accessions, such as Chunpoong, Yunpoong, Kopoong, Sunpoong, and Kumpoong in domestic cultivars, Hwangsuk, Jakyung and Suckju in domestic accessions, and Panax quinquefolius L. and Panax japonicus C.A. Meyer in foreign introduced accessions, respectively. Specific DNA fragments ranging from 200 to 3,000 base pairs in size could be obtained with various ISSR and RAPD primers under the optimized PCR conditions. The dissimilarity coefficients among the genetic polymorphisms of ginseng cultivars and accessions were calculated from 0.26 to 0.90 in RAPD and from 0.12 to 0.89 in ISSR analysis, respectively. Eleven plant samples were grouped siblings together with cultivars and parents based on cluster analysis of genetic distance depending on genetic property such as origin of the species. In results, both RAPD and ISSR analyses were useful for identifying the genetic relationship among cultivars and accessions of Panax species at DNA level.

Analysis of Dry Matter Yield and Feed Value for Selecting of Whole Crop Rice (최적 총체사료벼 품종 선발을 위한 건물수량 및 사료가치 분석)

  • Lee, Jeom-Ho;Jeong, O.Y.;Paek, J.S.;Hong, H.C.;Yang, S.J.;Lee, Y.T.;Kim, J.G.;Sung, K.I.;Kim, B.W.
    • Journal of Animal Science and Technology
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    • v.47 no.3
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    • pp.355-362
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    • 2005
  • This study was carried out to obtain basic information on variety selection for the utilization of whole crop rices(WCR) at National Institute of Crop Science, RDA, in 2004. Fifteen varieties and elite line were evaluated on feed value such as dry matter yield(DMY), crude protein( CP), acid detergent fiber(ADF), neutral detergent fiber(NDF) and total digestible nutrients(TDN). The dry matter yields were ranged from 13.23 to 17.83 ton per ha, the highest yielding varieties were Sobibyeo(l6.98ton / ha) in Japonica type, SR22060 (17.83 ton / ha) in New plant type, Hangangchalbyeo(I7.66 ton / ha) in Tongil type. Suweon 468 showed the highest value in the RFV and TDN content among the varieties, and Suweon 468, Suweon 498, Suweon 490 and SR22058 were chosen to have the high feed values through cluster analysis. The dry weight(grain) was found to be positively related with percent of the ripened grain, 1,000 grain weight and CPo TDN content was found to be positively related with CP, but negatively related with NDF and ADF. RFV was found to be negatively related with plant height, NDF and ADF. The promising rice varieties for WCR were Suweon 468, Suweon 498, Suweon 490 and SR22058 on the basis of CP, TDN and DMY.