• 제목/요약/키워드: common data model

검색결과 1,226건 처리시간 0.026초

TMA-OM(Tissue Microarray Object Model)과 주요 유전체 정보 통합

  • 김주한
    • 한국생물정보학회:학술대회논문집
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    • 한국생물정보시스템생물학회 2006년도 Principles and Practice of Microarray for Biomedical Researchers
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    • pp.30-36
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    • 2006
  • Tissue microarray (TMA) is an array-based technology allowing the examination of hundreds of tissue samples on a single slide. To handle, exchange, and disseminate TMA data, we need standard representations of the methods used, of the data generated, and of the clinical and histopathological information related to TMA data analysis. This study aims to create a comprehensive data model with flexibility that supports diverse experimental designs and with expressivity and extensibility that enables an adequate and comprehensive description of new clinical and histopathological data elements. We designed a Tissue Microarray Object Model (TMA-OM). Both the Array Information and the Experimental Procedure models are created by referring to Microarray Gene Expression Object Model, Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE), and the TMA Data Exchange Specifications (TMA DES). The Clinical and Histopathological Information model is created by using CAP Cancer Protocols and National Cancer Institute Common Data Elements (NCI CDEs). MGED Ontology, UMLS and the terms extracted from CAP Cancer Protocols and NCI CDEs are used to create a controlled vocabulary for unambiguous annotation. We implemented a web-based application for TMA-OM, supporting data export in XML format conforming to the TMA DES or the DTD derived from TMA-OM. TMA-OM provides a comprehensive data model for storage, analysis and exchange of TMA data and facilitates model-level integration of other biological models.

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광화학 확산모델 적용을 위한 수도권지역의 대기오염물질 배출량 산출 (Estimation of Air Pollutant Emissions for the Application of Photochemical Dispersion Model in the Seoul Metropolitan Area)

  • 이종범;김용국;김태우;방소영;정유정
    • 한국대기환경학회지
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    • 제13권2호
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    • pp.123-135
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    • 1997
  • An air pollutant emission inventory system for the input preparations of photochemical dispersion model was developed. Using the system, anthropogenic emissions as well as biogenic emissions in the Seoul metropolitan area were calculated. Anthropogenic emission by fuel combustion using regional cosumption data, and the laundries and so forth was estimated. The biogenic emission was estimated based upon meteorological data and the distribution of land use type in the study area. The anthropogenic emission of pollutants was highest in Seoul, and the second highest in Inchon. TSP and $SO_2$ were found large quantities during the winter due to increased consumption of heating oil. NOx and THC were emitted without seasonal variation. Among biogenic emissions, PAR was very common while NO was the least common. PAR, OLE, and ALD2 were emitted in large volumes in coniferous forest areas, while ISOP was emitted in deciduous forest areas. Generally, most biogenic emissions increased during daytime, and peaked between oen and two o'clock. Because of strong solar radiation, emission during the summer was high. Biogenic NO emissions were found to be lower compared to anthropogenic emissons, and other VOC was indicated relatively high. In the study area, among biogenic emissions PAR was found to be 3 times, OLE 8 times,and ALD2 12 times more common than among anthropogenic emissions.

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신선 물오징어 소매가격 변동성의 구조변화와 비대칭성 검증 (Tests for Asymmetry and Structure Changes in Retail Price Volatility of Fresh Common Squid in the Republic of Korea)

  • 남종오;심성현
    • Ocean and Polar Research
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    • 제37권4호
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    • pp.357-368
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    • 2015
  • This study analyzed structural changes and asymmetry of price volatility during the period before and after a point of structural change in price volatility, using the Korean fresh common squid daily retail price data from January 1, 2004 to September 30, 2015. This study utilized the following analytical methods: the unit-root test was applied to ensure the stability of the data, the Quandt-Andrews breakpoint test was applied to find the point of structural change, and the Glosten-Jagannathan-Runkle GARCH and EGARCH models were applied to investigate the asymmetry of price volatility. The empirical results of this study are as follows. First, ADF, PP, KPSS and Zivot-Andrews tests showed that the daily retail price change rate of the Korean fresh common squid differentiated by logarithm was stable. Secondly, the ARIMA (2,1,2) model was selected by information criteria such as AIC, SC, and HQ. Thirdly, the Quandt-Andrews breakpoint test found that a single structural change in price volatility occurred on June 11, 2009. Fourthly, the Glosten-Jagannathan-Runkle GARCH and EGARCH models showed that estimates of coefficients within the models were statistically significant before and after structural change and also that asymmetry as a leverage effect existed before and after structural change.

CIM 기반의 Distribution Automation System에 관한 연구 (A Study About Distribution Automation System Based on CIM)

  • 이희주;서정일;한주현
    • 전기학회논문지
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    • 제60권5호
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    • pp.913-920
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    • 2011
  • Distribution systems for operating the various systems should be operated organically. Distribution systems for organic operations extend the functionality of the system and system integration for the extension is doing. However, in systems integration for each unique non-standard definition of linkage and exchange systems are used. Non-standard definition of a unique linkage and exchange systems in the maintenance and expansion will result in many negative results. To solve these problems, the system and the exchange of information about the links between systems should define standards. IEC (International Electrotechnical Commission) power to solve these problems in the field of the Common Information Model (Common Information Model, CIM) standard (IEC61970, IEC61968) is defined as the transmission and distribution system integration and standardization for the exchange of information. In this paper, standardized system for building CIM-based distribution automation system should describe the process of building. In addition, the process of establishing a common information model needed (CIM) defined and associated services for a defined set of models is proposed in the standardization process.

장거리 공중-지상 영상정보용 데이터링크의 수신 안테나 최적 고각 제어 방법 (Optimum Elevation Angle Control of the Receiving Antenna for the Long Distance Air-Ground Common Data Link)

  • 류영재;안재민
    • 한국통신학회논문지
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    • 제41권11호
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    • pp.1528-1538
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    • 2016
  • 영상정보용 데이터링크는 장거리의 공중-지상 환경에서 영상과 신호정보를 전송하도록 설계된 통신 시스템이다. 본 논문은 장거리 공중-지상 채널환경의 신호 분석에 적합한 곡면지구 2-Ray 모델을 사용하여 영상정보용 데이터 링크의 통신거리에 따른 수신전력 변화 폭을 분석하고 지면 반사파에 의한 수신전력의 변화폭을 경감할 수 있는 수신 안테나의 최적 고각 제어방법을 제안한다. 제안된 방법은 추가적인 하드웨어 성능 향상 없이도 기존의 고각 제어 방법에 비하여 추가적인 링크마진을 확보할 수 있다.

Protein Ontology: Semantic Data Integration in Proteomics

  • Sidhu, Amandeep S.;Dillon, Tharam S.;Chang, Elizabeth;Sidhu, Baldev S.
    • 한국생물정보학회:학술대회논문집
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    • 한국생물정보시스템생물학회 2005년도 BIOINFO 2005
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    • pp.388-391
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    • 2005
  • The Protein Structural and Functional Conservation need a common language for data definition. With the help of common language provided by Protein Ontology the high level of sequence and functional conservation can be extended to all organisms with the likelihood that proteins that carry out core biological processes will again be probable orthologues. The structural and functional conservation in these proteins presents both opportunities and challenges. The main opportunity lies in the possibility of automated transfer of protein data annotations from experimentally traceable model organisms to a less traceable organism based on protein sequence similarity. Such information can be used to improve human health or agriculture. The challenge lies in using a common language to transfer protein data annotations among different species of organisms. First step in achieving this huge challenge is producing a structured, precisely defined common vocabulary using Protein Ontology. The Protein Ontology described in this paper covers the sequence, structure and biological roles of Protein Complexes in any organism.

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OMOP CDM 기반 의료 데이터 ETL 툴 개발 (Development of A HealthcareData ETL Tool Based on OMOP CDM)

  • 한만욱;이푸름;이호웅
    • 한국정보처리학회:학술대회논문집
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    • 한국정보처리학회 2023년도 추계학술발표대회
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    • pp.1224-1225
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    • 2023
  • 디지털 헬스케어 서비스 활성화에 따라 디지털 의료 데이터의 양은 매년 급속하게 증가하고 있으며, 의 데이터의 상호 교환과 연동을 위한 다양한 CDM(Common Data Model)이 개발되고 있다. 그러나, 의료 데이터 교류에 대한 요구가 증가하면서, 기존 레거시 시스템의 데이터를 CDM으로 변환하기 위한 추가적인 비용이 소요될 수 밖에 없다. 이에 본 연구에서는 OMOP CDM (Observational Medial Outcomes Partnership Common DataModel) 기반 의료 데이터 ETL (Extract, Transform, Load) 툴을 개발하였다. OMOP CDM ETL 툴은 기존의 레거시 데이터베이스 정보를 CDM으로 변환할 수 있는 효과적인 료인터페이스를 제공함으로써, 디지털 의료 데이터 공유와 관리 및 분석의 효율성을 증대할 수 있을 것이다.

자원복원력 개념을 적용한 사전확률분포 및 상태공간 잉여생산 평가모델: 살오징어(Todarodes pacificus) 개체군 자원평가 (A State-space Production Assessment Model with a Joint Prior Based on Population Resilience: Illustration with the Common Squid Todarodes pacificus Stock)

  • 김진우;현상윤;윤상철
    • 한국수산과학회지
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    • 제55권2호
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    • pp.183-188
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    • 2022
  • It is a difficult task to estimate parameters in even a simple stock assessment model such as a surplus production model, using only data about temporal catch-per-unit-effort (CPUE) (or survey index) and fishery yields. Such difficulty is exacerbated when time-varying parameters are treated as random effects (aka state variables). To overcome the difficulty, previous studies incorporated somewhat subjective assumptions (e.g., B1=K) or informative priors of parameters. A key is how to build an objective joint prior of parameters, reducing subjectivity. Given the limited data on temporal CPUEs and fishery yields from 1999-2020 for common squid Todarodes pacificus, we built a joint prior of only two parameters, intrinsic growth rate (r) and carrying capacity (K), based on the resilience level of the population (Froese et al., 2017), and used a Bayesian state-space production assessment model. We used template model builder (TMB), a R package for implementing the assessment model, and estimating all parameters in the model. The predicted annual biomass was in the range of 0.76×106 to 4.06×106 MT, the estimated MSY was 0.13×106 MT, the estimated r was 0.24, and the estimated K was 2.10×106 MT.

공용데이터링크를 위한 공대지 채널 모델링 (Aeronautical to Ground Channel Modeling for Common Data Link)

  • 박홍석;심재남;김동현;김동구
    • 한국통신학회논문지
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    • 제41권12호
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    • pp.1876-1883
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    • 2016
  • 본 논문에서는 고속의 공용데이터링크(common data link, CDL)를 위한 새로운 채널 모델을 제안한다. 송신기의 고도가 수km ~ 수십km이고 통달거리가 수백km인 경우 지구 곡률에 의해 송신신호가 수신기의 앞 쪽에서 지면에 반사되어 들어오는 Two-ray 채널이 발생할 가능성이 크다. 송수신기의 빔포밍(beamforming) 각도와 안테나 방사 패턴(radiation pattern)에 따라 반사 경로로 들어오는 신호의 최대 지연 시간(maximum delay)과 전력 지연 프로파일(power delay profile)을 추정하여 Two-ray 채널을 모델링한다. 제안하는 채널 모델에서는 통달거리가 길기 때문에 전력 지연 프로파일이 최대 지연 시간보다 신호 대 잡음비(signal to noise ratio, SNR)에 대한 비트 오류율(bit error rate, BER)에 더 큰 영향을 미친다.

Extending the Multidimensional Data Model to Handle Complex Data

  • Mansmann, Svetlana;Scholl, Marc H.
    • Journal of Computing Science and Engineering
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    • 제1권2호
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    • pp.125-160
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    • 2007
  • Data Warehousing and OLAP (On-Line Analytical Processing) have turned into the key technology for comprehensive data analysis. Originally developed for the needs of decision support in business, data warehouses have proven to be an adequate solution for a variety of non-business applications and domains, such as government, research, and medicine. Analytical power of the OLAP technology comes from its underlying multidimensional data model, which allows users to see data from different perspectives. However, this model displays a number of deficiencies when applied to non-conventional scenarios and analysis tasks. This paper presents an attempt to systematically summarize various extensions of the original multidimensional data model that have been proposed by researchers and practitioners in the recent years. Presented concepts are arranged into a formal classification consisting of fact types, factual and fact-dimensional relationships, and dimension types, supplied with explanatory examples from real-world usage scenarios. Both the static elements of the model, such as types of fact and dimension hierarchy schemes, and dynamic features, such as support for advanced operators and derived elements. We also propose a semantically rich graphical notation called X-DFM that extends the popular Dimensional Fact Model by refining and modifying the set of constructs as to make it coherent with the formal model. An evaluation of our framework against a set of common modeling requirements summarizes the contribution.