• The Korean Journal of Malacology
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• v.26 no.4
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• pp.267-273
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• 2010

From January to December 2007, we have investigated sediment types, environmental factors and density of clam Ruditapes philippinarum inhabited at Oeri, Naeri, Jonghyeon and Bangmiri tidal flats in Gyeonggi Bay off the west coast of Korea. Sediment types of Oeri and Jonghyeon were characterized with well sorted muddy sand. In contrast, Bangmiri tidal flat was mainly composed of poorly sorted gravelly muddy silt and Naeri was characterized with very poorly sorted muddy-sandy gravel. During the course of study, the surface water temperature, salinity, dissolved oxygen and pH ranged 3.2 to $27.0^{\circ}C$, 21.7 to 33.3 ‰, 5.6 to 12.7 mg/l and 7.36 to 8.82, respectively. The suspended solid (SS) ranged from 3.2 to 1,266.0 mg/l and chlorophyll-a level in the water column ranged $0.3-36.1{\mu}g/l$, respectively. The density of clam in the study areas was mainly determined by the harvesting activities rather than the types of substrate. Relatively higher density of clam was observed in Oeri and Bangmiri where the clam seeds were sowed by the villagers. Condition factor of clams were found to be higher in Oeri where the substrate sorting was better with higher level of chlorophyll a. It was believed that sediment types and the level of available food the two governing factors controlling the density and growth of clam in Gyeonggi Bay.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.36 no.4
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• pp.267-273
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• 2000

The tooth selectivity of the dredge for catching venus clam (Gomphina melanaegis) was described in which the teeth penetrated the bottom and lifted the shell into the bag. Some factors affecting the selection action of the teeth of the dredge were analyzed related to shell length and shell height. The retention probability of venus clam not sifting through the gaps between the teeth was calculated for various shell lengths and was fitted to two parameter logistic selection curve. The formula obtained is as follows: $P= \frac{1}{1+exp[8.24](\frac{d}{L_1}-0.649)}$, where d is distance between teeth and $L_1$ is a shell length. For biological minimum size(25mm) of venus clam to be catchability 50% the distance between teeth was estimated 16.2mm from the logistic curve. Therefore it is desirable to extend that current spacing between teeth from 12mm to 16mm for the venus clam dredge. That space increasing enables fuel oil of vessel to drag a dredge to be reduced and also man power to sift through sifter smaller venus clams on boards to be reduced.

• Journal of Aquaculture
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• v.15 no.1
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• pp.1-6
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• 2002

Hydrological factors prevailing in the Namdae stream were as follows : temperature = -0.2~$26.8^{\circ}C$, salinity = 0.50~3.21$\textperthousand$, DO = 5.21~8.13 ppm, $PO_{4}-P$ = ND~1.37 ppm, $NO_{2-}$ = 0.10~0.81 ppm, COD = 1.53~2.82 ppm, $H_2 S$ = ND~0.0012 ppm and IL = 0.85~1.36 %. Sediment was typical, gravelly sand or sand with very good sorting value ranging from 0.53 to 1.77$\varphi$. Population density of the clam C. japonica ranged from 2 to 464/$m^2$. The clams were divided into four size classes, based on shell length of small (0~10 mm), medium (10~20 mm), large (20~30 mm) and largest (>30 mm), and were encountered at the frequency of 3.2, 50.4, 43.3 and 3.1 %, respectively.

• The Korean Journal of Malacology
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• v.28 no.1
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• pp.29-35
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• 2012

Growth patterns of the Manila clam, Ruditapes philippinarum in each tidal level were studied in the intertidal zone in Tae-an on the west coast of South Korea from April to August 2009. Environmental factors and the specimens of R. philippinarum were monthly collected at three intertidal locations: low intertidal zone, low-middle intertidal zone and middle intertidal zone. Temperature of sediment in low intertidal zone were lower than those in other intertidal locations. Concentrations of Chl-${\alpha}$ were not significantly different between in each tidal level. Exposure hours in low intertidal zone were shorter than those in other intertidal locations. Density of each year class in low intertidal zone were higher than those in low-middle intertidal zone and middle intertidal zone. Growth factors of R. philippinarum in low intertidal zone were better than those in other intertidal locations. The growth rate of under one year class individuals of low intertidal zone were higher than those in low-middle intertidal zone and middle intertidal zone, before the main recruitment period of R. pilippinarum. Although the growth patterns of R. philippinarum may be affected by various environmental factors, we suggests that the exposure duration is the main affect in the growth patterns of R. philippinarum in intertidal zone.

• Journal of Marine Life Science
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• v.6 no.2
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• pp.97-105
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• 2021

Tegillarca granosa, is one of the most important fishery resources throughout Asia. However, due to industrialization factories, marine environmental pollution, and global warming, the marine fishery production has drop sharply. In order to understand the genetic factors of the blood clam, which is a major fishery resource on the southern coast of Korea, the whole genome of blood clam was studied. The assembled genome of T. granosa was 915.4 Mb, and 19 chromosomes were identified. 25,134 genes were identified, and 22,745 genes were functionally annotated. As a result of performing gene gain and loss analysis between the blood clam genome and eight other types of shellfish, it was confirmed that 725 gene groups were expanded, and 479 gene groups were contracted. The homeobox gene cluster of blood clam showed a well-preserved genetic structure within lophotrochozoan ancestor. T. granosa genome showed high similarity between three hemoglobin genes with Scarpharca broughtonii. The blood clam genome will provide information for the genetic and physiological characteristics of blood clam adaptation, evolution, and the development of aquaculture industry.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.42 no.5
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• pp.456-460
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• 2009

Biofilm is a structured community of microorganism encapsulated within a self-developed polymeric matrix and adherent to a living or a solid surface. In this study, we investigated the effects of various substrates on the formation of biofilm in Vibrio parahaemolyticus. We found that biofilm formation profoundly increased in a substrate, that consisted of calcium chloride, calcium nitrate, and calcium sulfate in 1% peptone water. On the other hand, a dramatic reduction in biofilm formation was observed in a substrate, that consisted of glucose and ferric chloride in LB broth. These results suggest that V. parahaemolyticus prefer to form a biofilm on the surface of a crustacean or a clam, where calcium ion is rich, and also where seawater temperature is relatively lower. In contrast, high levels of glucose in a crustacean or a clam body resulting from increased seawater temperature, can make V. parahaemolyticus detach from it and lead to free floating.

• The Korean Journal of Malacology
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• v.30 no.2
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• pp.117-126
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• 2014

To assess the effect of environmental factors on the sustainability of cultured production manila clam (Ruditapes philippinarum), we investigated the habitat characteristics of tidal flat (Hwangdo and Jeongsanpo in Taean). We measured the physiochemical parameters (temperature, salanity, pH, dissolved oxygen and nutrients) and the characteristics (mean size, chemical oxygen demand, ignition loss, C/N ratio and C/S ratio) of surface sediments. The C/N ratio of Hwangdo and Jeongsanpo were 9.0, 5.3 and the C/S ratio was 0.162, 0.159. The concentration of chlorophyll a at Hwangdo was higher than that of Jeongsanpo and species of micro algae were 102 and 100. The enrichment factor (Ef) and index of accumulation rate (Igeo) of the metals showed that those research areas can be classified as heavily polluted, heavily to moderately polluted, or more or less unpolluted, respectively. So two survey area of cultured clams in the tidal flat have been effected by the various environmental conditions, there are needed an improvement methods and continuous research for increasing the production of manila clam (Ruditapes philippinarum).

• Korean Journal of Environmental Biology
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• v.22 no.1
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• pp.28-34
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• 2004

The feeding, clearance rate, and ingestion rate of Manila clam (Ruditapes philippinarum) were investigated with small group (10.8$\pm$.58 mm in shell length) and large group (37.5$\pm$3.8 mm in shell length) under combination in water temperature (24, 27, 33, $36^{\circ}C$) With salinity (12, 15, 24, 27$\textperthousand$). The maximum feeding, clearance rate, and ingestion rate in small and large groups were $27^{\circ}C$ and 27$\textperthousand$, respectively. While, The minimum feeding, clearance rate, and ingestion rate in both groups were $36^{\circ}C$ and 12$\textperthousand$, respectively. There results were suggested that the feeding, clearance rate, and ingestion rate of Manila clam were significantly influenced by external factors such as water temperature and salinity. The reason for the mass mortality of Manila clam during the heavy rainfall in summer season can be explained by high temperature and low salinity.

• Korean Journal of Ecology and Environment
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• v.55 no.3
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• pp.212-220
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• 2022

An estuary is a water ecosystem with a high abundance of the species diversity, due to a variety of complex physicochemical factors of the area where freshwater and ocean mixed. The identification of Corbicula species in the estuary environments is difficult because of various morphological characteristics. In this study, we provide taxonomic information on Corbicula species with taxonomic difficulties using morphological and genetic analysis. This study was conducted on clams from the Seomjin River-Gwangyang Bay, one of the major production area of marsh clam in Korea. As a result, we characterized Cytocrome C Oxidase subunit I (COI) sequences of the Corbicula. The 636 bp nucleotide sequences of COI have 98% homology among Corbicula species collected from 2 sites of Seomjin River-Gwangyang Bay. The phylogenetic analysis with 17 species of Corbicula indicated that most of the species collected from Seomjin River-Gwangyang Bay were brackish water clam (Corbicula japonica), and only one Asian clam (Corbicula fluminea). The evolutionary distance between C. japonica and C. fluminea was less than 0.003. Therefore, it was confirmed that C. japonica is phylogenetically closely related to C. fluminea. In 9 species of Cyrenidae, phylogenetic tree was classified into three lineages. These results will be used as an important data for an identification of clam species by providing genetic information for Corbicula species with a morphological diversity.

• Journal of Korean Society on Water Environment
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• v.36 no.1
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• pp.36-47
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• 2020

Three large scale weirs were constructed 2010 - 2011 in the Namhan river, Korea. The purpose of this study was to investigate the spatial distribution of benthic macroinvertebrates and the influence of environmental factors at the weirs 2014 - 2015. The number of species was higher in the riparian zone than in the transition or the limnetic zone. This seems to be because of the diversification of microhabitats and food sources according to the development of littoral zones. From the riparian zone to the limnetic zone, the individual abundance proportion of gathering collectors among functional feeding groups decreased, and that of filtering collectors increased. In the limnetic zone, sprawlers and climbers among habitat orientation groups decreased, and burrowers increased. This means that coarse particulate organic matter originated from land or riparian zone was transformed to fine particulate organic matter in the limnetic zone. Asian clam (Corbicula fluminea) and chironomids were dominant species based on individual abundance. Asian clam, a major taxon considering biomass, was abundant toward the limnetic zone. This is becasue of the shallow depth, suitable water current, slightly coarse substrate, and good water quality. There was no significant relationship between the water quality and the characteristics of the benthic macroinvertebrate community because the water quality was spatially not heterogenous. The more influential factors for benthic community were physical factors, especially water depth. Water depth showed a markedly significant correlation with Shannon-Weaver's species diversity (r=-0.90), Margalef's species richness (r=-0.82), and McNaughton's dominance (r=0.86). Water depth showed a positive correlation (r=0.68) with the Kong and Kim BMSI (Bentic Macroinverebrates Streambed Index), and this may be related to the coarse substrate of the limnetic zone.