• 제목/요약/키워드: cell type

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A semi-automatic cell type annotation method for single-cell RNA sequencing dataset

  • Kim, Wan;Yoon, Sung Min;Kim, Sangsoo
    • Genomics & Informatics
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    • 제18권3호
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    • pp.26.1-26.6
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    • 2020
  • Single-cell RNA sequencing (scRNA-seq) has been widely applied to provide insights into the cell-by-cell expression difference in a given bulk sample. Accordingly, numerous analysis methods have been developed. As it involves simultaneous analyses of many cell and genes, efficiency of the methods is crucial. The conventional cell type annotation method is laborious and subjective. Here we propose a semi-automatic method that calculates a normalized score for each cell type based on user-supplied cell type-specific marker gene list. The method was applied to a publicly available scRNA-seq data of mouse cardiac non-myocyte cell pool. Annotating the 35 t-stochastic neighbor embedding clusters into 12 cell types was straightforward, and its accuracy was evaluated by constructing co-expression network for each cell type. Gene Ontology analysis was congruent with the annotated cell type and the corollary regulatory network analysis showed upstream transcription factors that have well supported literature evidences. The source code is available as an R script upon request.

한국산 산개구리(Rana dybowskii Guenther)의 뇌하수체 전엽에 관한 연구 - II. 동면기와 활동기의 미세구조적 차이 (An Electron Microscopical Study on the Pars distalis of Rana dybowskii Guenther. II. Ultrastructural differences between hibernating and active periods of frogs)

  • 김창환;김우갑;이근옥;김지현;김형배
    • Applied Microscopy
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    • 제11권1호
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    • pp.59-65
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    • 1981
  • 활동기와 동면기중 Rana dybowoskii Guenther의 뇌하수체 전엽을 전자현미경적으로 비교한 결과 7 가지의 cell type를 구분할 수 있었으며 이 cell type 중 type 5 에서 많은 차이를 관찰할 수 있었다. Cell type 1 : 분비 과립의 크기는 $375{\sim}687m{\mu}$ 정도였고 모양은 완전 구형이었다. Cell type 2 : 분비과립의 크기는 $250{\sim}437m{\mu}$ 정도였으나 모양은 비교적 다양하였다. Cell type 3 : 분비과립의 크기는 $125{\sim}187m{\mu}$ 정도고 모양은 난형내지 rod 형이었다. Cell type 4 : electron density 가 가장 낮으며 과립의 밀도는 제일 높았다. 모양은 매우 다양하였으며 가끔 대과립도 관찰되었다. 분리과립의 크기는 대개 $210{\sim}420m{\mu}$ 정도이다. Cell type 5 : electron density는 cell type 4 와 유사하나 분비과립의 윤곽은 cell type 4 보다 훨씬 뚜렷하였다. 과립의 밀도는 cell type 4 보다 낮으며 모양은 cell type 4와 비슷하나 rod 형이 많다. 분비과립의 크기는 $200{\sim}863m{\mu}$이다. Cell type 6 : type 2와 비슷하나 cytoplasm 의 electron density가 매우 낮은 light cell 이다. 분비 과립의 크기는 대개 $232{\sim}316m{\mu}$이다. Cell type 7 : 어떤 분비 과립도 함유하고 있지 않은 미분화된 세포이다. 활동기와 동면기의 차이점은 type 5 에서 관찰 할 수 있었다. 즉 활동기에는 분바과립이 매우 발달하였으나 동면기에는 매우 감소되며 cytoplasm에는 크고 작은 vacuole로 가득 차있다.

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Cell-Type에 따른 PV모듈의 일사강도와 온도 특성 비교 (The analysis of temperature and light intensity characteristics of PV modules with solar cell type)

  • 배종국;김경수;강기환;유권종;안형근;한득영
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2011년도 제42회 하계학술대회
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    • pp.1316-1317
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    • 2011
  • This paper presents analysis of temperature and light intensity characteristics of PV modules with solar cell type. Taking the effect of sunlight irradiance on the cell temperature, the first experiment takes ambient temperature as reference input and uses the solar insolation as a unique varying parameter. Then taking the effect of the cell temperature on sunlight irradiance, the second experiment takes 1000W/$m^2$ as reference input and uses the cell temperature as a unique varying parameter. As a result, varying sunlight irradiance, the Cell-Type with the smallest change in output is HIT and the Cell-Type with the biggest change in output is a-Si. Varying the cell temperature, the Cell-Type with the smallest change in output is a-Si and the Cell-Type with the biggest change in output is Single-Si. And considering both temperature and light intensity characteristics, the Cell-Type with the smallest change in output is HIT.

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꿀벌부채명나방 뇌신경분비세포의 변태에 따른 변화 (Metamorphic Changes of the Neurosecretory Cells in the Brains of Wax Moth Gafferfa mellonella during Metamorphosis)

  • 이봉희;강성훈;김민영;김우갑
    • 한국동물학회지
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    • 제32권2호
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    • pp.120-133
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    • 1989
  • 꿀벌부채명나방의 후기유충, 전용, 유충 직후용, 4일용, 성충2일전용, 성체에서 뇌를 적출하여 paraidehyde-fuchsin으로 분비활성 신경분비세포만을 염색하여 이 세포들의 분포, 수, 분비물질의 특성등이 변태시기에 따라 변화하는 것으로 추적하였다. 위의 6변태단계 뇌의 뇌간부, 전뇌측부, 시엽근역부, 중뇌, 후뇌에서 4형의 신경분비세포가 동정되었다. 뇌간부에 있는 medial neurosecretory cell은 6변태시기 뇌에서 3-7개이며, 제I형 신경분비세포는 1개를 가지고 있는 성충2일전용을 제외하고는 전반적으로 3개씩 관찰되었다. 전뇌측부에서 관찰되는 lateral neurosecretory cell은 용기와 성충기에서 1-5개가 관찰되었으며 제IV형 신경분비세포가 가장 많았다. 시엽근역부에 분포하는 Optic-lobe neurosecretory cell은 4일용에서만 1개가 관찰되었고 제I형 신경분비세포로 확인되었다. 중뇌에서 관찰되는 deuto cerebral neurosecretory cell은 성충에서만 1개가 관찰되었으며 이 세포는 제II형 신경분비세포이었다. 뇌에 있는 tritocerebral neurosecretory cell은 후기유충과 성충에서 3개와 1개가 각각 관찰되었으며 이 세포중 제I형 신경분비세포는 관찰되지 않았다.

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동양달팽이의 소화관에 대한 조직화학적 및 미세구조적 연구 (Histochemical and Ultrastructural Study on the Digestive Tract of a Land Snail Nesiohelix samarangae)

  • 정계헌;이용석
    • 한국패류학회지
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    • 제14권2호
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    • pp.131-147
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    • 1998
  • A histochemical and ultrastructural study on the epithelia of some selected digestive tracks such as esophagus, crop, intestine of a land snail N. samarangae was carried out during the period of June 1997 to may 1998. The epithelium of digestive tract are simple columnar epithelium and consisted of five types of columnar cells. Type 1 cell which is majority in number has a brush border with microvilli on the free surface of the cell and contains numerous secretory granules supposed to be neutral mucopolysaccharide. Type 2 cell, elongated conical in shape, is rarely found in the epithelium. This cell also has a brush border with microvilli on its free surface and contains well developed rough surfaced endoplasmic reticulum, Golgi bodies, and secretory granules in various electron densities. This cell seems to produce both of acid and neutral mucopolysaccharides. Type 3 cell, which is morphologically similar to the Type 1 cell, has microvilli and cilia on the free surface and exists in group only in the limited regions of the intestine. Type 4 cell, typical goblet cell containing secretory granules in high electron density. Type 5 cell rarely found in the digestive tract. This cell contain inconspicuous materials.

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평판형 연료전지 스택의 제조를 위한 매니폴드 형상별 압력분포 시뮬레이션 (Pressure Distribution Simulation on Geometrical Manifolds Structure for Fabrication of a Planar-type Fuel-Cell Stack)

  • 박세준;최용성;이경섭
    • 전기학회논문지P
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    • 제58권4호
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    • pp.609-614
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    • 2009
  • A fuel-cell power system among various alternative power sources has many advantages such as comparatively independable circumstances, high-efficient, and heat-recyclable, thus it is now able to be up to hundreds MWh-scaled through improving feasibility and longevity of it. During the last few decades, numerous research results has been investigated to expand interest in fuel-cell technology. This study presents pressure distribution on the geometrical manifold structures, which are U-type and Z-type, of a planar-type fuel-cell stack by simulated with computational fluid dynamics(CFD). Then, electrical performance of a 200W fuel-cell stack, which is U-type, was diagnosed after pre-conditioning operation. The stack has electrical characteristics ; 22V, 10A, 220W, and current density $200mA/cm^2$.

BIPV를 활용한 건축물 디자인 계획에 관한 연구 (A Study on the Architectural Design Plans Using BIPV)

  • 전근식;류수훈
    • 한국디지털건축인테리어학회논문집
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    • 제12권3호
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    • pp.5-13
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    • 2012
  • In this study, features and design effects of PV(Photovoltaic) modules were classified to help the installation of BIPV(Building Integrated Photovoltaic) In addition, through domestic and international trends and cases survey, installation method was organized and applicable range of efficiency and design from First-generation solar cells to the third-generation solar cell was classified. Frist, Crystalline Solar cell module of first-generation is appropriate for the wall type, roof, louver, shading and etc. It has superiority of technology and price stability and can be achieved by a variety of aesthetic effects. Second, Dye-Sensitized Solar Cell of Thin Film solar cell can express a variety of colors, adjust light transmittance and maximize the aesthetic splendor. It is appropriate for the wall type, window type, curtain wall type and etc. Also, see-through type solar cell can provide comforts cause of free flow of light. And it is advantageous from economic due to adjust the indoor temperature. It is appropriate for the atrium type, curtain wall type, window type and etc.

Cell type-specific gene expression profiling in brain tissue: comparison between TRAP, LCM and RNA-seq

  • Kim, TaeHyun;Lim, Chae-Seok;Kaang, Bong-Kiun
    • BMB Reports
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    • 제48권7호
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    • pp.388-394
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    • 2015
  • The brain is an organ that consists of various cell types. As our knowledge of the structure and function of the brain progresses, cell type-specific research is gaining importance. Together with advances in sequencing technology and bioinformatics, cell type-specific transcriptome studies are providing important insights into brain cell function. In this review, we discuss 3 different cell type-specific transcriptome analyses i.e., Laser Capture Microdissection (LCM), Translating Ribosome Affinity Purification (TRAP)/RiboTag, and single cell RNA-Seq, that are widely used in the field of neuroscience. [BMB Reports 2015; 48(7): 388-394]

우백혈병의 임상 및 세포형태학적 연구 (Clinical and Cytomorphological Studios on Bovine Leukosis)

  • 김덕환
    • 한국임상수의학회지
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    • 제2권1호
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    • pp.79-104
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    • 1985
  • Clinical and cytomorphological studies were carried out in 32 leukotic cattle from Tokachi and Kushiro districts in Hokkaido during the 12 year period from 1969 to 1980. The leukotic cattle were examined :and divided into four types(15 cases of the adult, 11 cases of the thymic, 4 casas of the calf and 2 cases of the skin types). The results obtained were as follows : 1. As for the frequency of the main clinical signs in each type, In the adult type, the main clinical signs (of decreasing order) are as follows: swelling of the superficial lymph nodes>depression and loss of weight>tachycardia>anorekia, anemia of the visible mucous membrane and tachypnea. Those of the thymic type were swelling of the thymus>swelling of the medial iliac lymph nodes> swelling of the superficial lymph nodes>tachypnea. Those of the calf type were swelling of the auperficial lymph nodes>depression and emaciation>tachypnea>anorexia, tachycardia, anemia of the visible mucous membrane and recumbency. Those of the skin type were generalized urticaria-like lesions in skin and swelling of superficial lymph nodes>and depression and loss of weight in the decreasing order of frequency. In addition, large tumor mass in the pelvic cavity and swelling of the medial iliac lymph nodes were detected through rectal palpation in 33.3% and 100% in the adult type cases, respectively. 2. As for the hematological findings, The frequency of occurrence of decreased erythrocyte counts in the decreasing order were as follows : adult>calf>thymic>and skin types. The increase in the total leukocyte count in the order of decreasing frequency were as follows: calf>thymic>adult>and skin types. The increase in the absolute lymphocyte counts was found to be at a low rate, 62.5% of all the cases examined. By contrast, the increase of 5% or more of abnormal lymphocyte rates was observed at a high rate, 96.9% of the total cases. 3. Abnormal lymphocytes were found in all cases examined for lymph nodes biopsied. 4. From the cytomorphological point of view, leukotic cells were divided into 3 types: reticulum cell, lymphoid cell and monocytic cell types. The adult type leukotic cattle were divided with reticulum cell type (66.7%), the lymphoid cell type(22.6%) and monocytic cell type(6.7%). The thymic type was lymphoip cell type(72.7%) and reticulum cell type(27.3%). In the calf type, all were lymphoid cell type while all of the skin type were reticulum cell type only. 5. The leukotic cattle had higher NP frequency in the blood and lymphoid tissue than non-1 eukotic cattle. Especially the adult type had the highest NP frequency. However, it was not recognized that NP were characteristic of leukotic cattle alone. 6. The above findings lead to the conclusion that the most effective diagnostic methods for bovine leukosis are the confirmation of swelling of the superficial and internal lymph nodes and thymus in addition to appearance of abnormal neoplastic cell in the peripheral blood and lymph nodes biopsied.

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수목형상에 따른 태양전지 모듈의 배열 연구 (Study on the tree-mimic array of solar cell modules)

  • 김기현;윤린
    • 한국태양에너지학회 논문집
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    • 제31권6호
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    • pp.32-39
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    • 2011
  • This study is about the installation of the solar cell modules. The solar cell modules are built by the tree-mimic structure, and the performance is compared with that of the flat-plate type solar cell module installation. The mathematical tree model, which was suggested by Fisher and Honda, is utilized to determine the location of the solar cell modules for the tree-mimic type. The experiment shows that the generated electric power of the flat-plate type is higher than that of the tree-mimic type by 30% for one month of July. This lower performance for the tree-mimic type comes from the shading effects among the solar cell modules. The theoretical calculation for the absorbed solar radiation on the two types of solar cell installation shows that the tree-mimic type is higher than the flat-plate type by 8.5%. The shading area for the tree-mimic model is calculated with time by using the 3D-CAD, which will be utilized for the optimization of the tree-mimic model in the future.