• Title/Summary/Keyword: canopy coverage

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Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.17-17
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE_CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P)>7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.243-243
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P) >7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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Early Responses of Planted Quercus serrata Seedlings and Understory Vegetation to Artificial Gap Treatments in Black Locust Plantation (아까시나무림에서 인공 숲틈 처리에 대한 졸참나무 식재목 및 하층식생의 초기 반응)

  • Cho, Yong-Chan;Kim, Jun-Soo;Lee, Jung-Hyo;Lee, Heon-Ho;Ma, Ho-Seob;Lee, Chang-Seok;Cho, Hyun-Je;Bae, Kwan-Ho
    • Journal of Korean Society of Forest Science
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    • v.98 no.1
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    • pp.94-105
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    • 2009
  • Black locust (Robinia pseudoacacia) stand is representative lowland exotic plantation with low ecological quality and arrested succession in South Korea. To facilitate succession and restore natural vegetation, small canopy gaps (${\sim}57m^2$), which can modify minimally structural variables and reduce restoration related disturbances on stand, was established in the black locust stand, and oak (Quercus serrata) seedlings were introduced in the gap. Two types of varying levels were introduced for gap creation; cutting (C) and girdling (G) on canopies. Understory removal (CU and GU) treatment was applied as subtypes of structural modification. Growth (diameter, height and leaf area) of target species and responses (species composition, diversity and coverage) of understory community were monitored during study years (2007~2008). Canopy openness was different significantly among treatments but not for light availability. Based on the result of logistic regression, growth of height and leaf area of seedlings were significant variables on seedling survival. Height and leaf area of seedlings were increased during study years, although radial growth was reduced. During study years, there were no significant differences in species composition and diversity, and total coverage increased about 20%. Increase of resources by gap creation and understory removal likely affect growth of target species. Small gap creation was effective to reduce understory responses in composition and diverstiy. Synthesized, growth of target species and responses of understory community to small canopy gap creation exhibited, in short term, possibility of utilization in alternative forest restoration and management option. Long-term monitoring is necessary to certificate effect of artificial gap creation on forest restoration.

Factors Affecting the Early Natural Regeneration of Pinus densiflora S. et Z. after Forest Works at Mt. Joongwang Located in Pyungchang-gun, Kangwon-do (강원도(江原道) 평창군(平昌郡) 중왕산(中旺山)에서 산림작업(山林作業) 후(後) 소나무의 초기(初期) 천연(天然) 갱신(更新)에 미치는 요인(要因))

  • Park, Pil Sun;Lee, Don Koo
    • Journal of Korean Society of Forest Science
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    • v.85 no.3
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    • pp.524-531
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    • 1996
  • The objective of this study was to determine the important factors affecting the early natural regeneration of Pinus densiflora S. et Z. Seed germination, survival and height growth of the pine seedlings were examined at four experimental plots of P. densiflora forests including forest roadside. Plots I and III were thinned in 1992, plot II was treated with hexazinone in 1993 after seed tree method was applied in 1982 and 1989. Seedlings emerged after thinning and the rate of their emergence depended on forest floor conditions. Seedling survival was related with light conditions, herbaceous vegetation, and degrees of rainfall. More seedlings emerged in forest hauling roads than within the forest because soil scarification due to logging provided better conditions for seed germination and seedling growth. Seed supply was enough, but germination rate was very low in the forest compared with that in the greenhouse because micro-environments such as organic layer and herbaceous plant acted as limiting factors. Weed control was needed for 4 to 5 years until seedlings grew upto about 50cm in height which was similar to that of herbaceous plants. But 10-40% coverage of herbaceous vegetation was needed to protect small seedlings from heavy rain. Forest works such as thinning and logging, over 40% of light were important factors to help the pine regeneration. However, over 70% coverage of herbaceous vegetation, and heavy rain inhibited rather survival and growth of pine seedlings.

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Vegetational Changes in the Early Stages after Lumbering of Populus albaglandulosa in Urban Forest (도시림에서 은수원사시나무 벌목 후 초기의 식생 변화)

  • 민병미
    • The Korean Journal of Ecology
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    • v.22 no.5
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    • pp.277-285
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    • 1999
  • To develop a better restoration technique for altering urban planted forest to more natural forest, the changes of flora, vegetation structure and woody plant growth in the early stage after lumbering only Populus albaglandulosa of the tree layer were studied in Chungdam Park, Chungdam-dong, Kangnam-gu, Seoul for two years (from 1997 to 1998). The results were as follow. First, in the year after lumbering, the species changes occurred not in woody plants but in herbs, which increased by 44%. Three species including Viola verecunda disappeared, and 15 species including ruderals such as Metaplexis japonica and introduced species such as Erechtites hieracifolia appeared newly. Second, lumbering caused the coverages of Quercus aliena, Q. mongolica, Q. acutissima and Sorbus alnifolia in the subtree, or shrub layer, to be increased abruptly. The coverage of Lespedeza bicolor was affected by neighboring plants. Third, in the herb layer the coverage of Artemisia keiskeana was conspicuously increased but those of the others were not. Fourth, by ridding the upper layer canopy, Quercus' growth rates were increased highly. Rates of DBH growth of Q. aliena, Q. mongolica and Q. dentata were increased to 53.0%, 22.9% and 8% in the experimental area, and 23.1%, 8.3% and 6.1% in the control area, respectively, during two growing seasons (from May 11, 1997 to October 27, 1998). The ratios of twig biomasses of the previous year to the next year were 100:565 in Q. aliena, 100:197 in Q. mongolica and 100:644 in Q. dentata in the experimental area. There were also growth ratios of 100:117 in Q. aliena, 100:100 in Q. mongolica and 100:42 in Q. dentata in the control area, respectively. The growth rate increases of Q. aliena and Q. dentata were thus conspicuous in twig rather than in trunk, but that of Q. mongolica was vice versa.

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Edge effects confirmed at the clear-cut area of Korean red pine forest in Uljin, eastern Korea

  • Jung, Song Hie;Lim, Chi Hong;Kim, A Reum;Woo, Dong Min;Kwon, Hye Jin;Cho, Yong Chan;Lee, Chang Seok
    • Journal of Ecology and Environment
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    • v.41 no.10
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    • pp.290-301
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    • 2017
  • Background: Forest edges create distinctive ecological space as adjacent constituents, which distinguish between different ecosystems or land use types. These edges are made by anthropogenic or natural disturbance and affects both abiotic and biotic factors gradually. This study was carried out to assess edge effects on disturbed landscape at the pine-dominated clear-cut area in a genetic resources reserve in Uljin-gun, eastern Korea. This study aims to estimate the distance of edge influence by analyzing changes of abiotic and biotic factors along the distance from forest edge. Further, we recommend forest management strategy for sustaining healthy forest landscapes by reducing effects of deforestation. Results: Distance of edge effect based on the abiotic factors varied from 8.2 to 33.0 m. The distances were the longest in $Mg^{2+}$ content and total nitrogen, $K^+$, $Ca^{2+}$ contents, canopy openness, light intensity, air humidity, $Na^+$ content, and soil temperature followed. The result based on biotic factors varied from 6.8 to 29.5 m, coverage of tree species in the herb layer showed the longest distance and coverage of shrub plant in the herb layer, evenness, species diversity, total coverage of herb layer, and species richness followed. As the result of calculation of edge effect by synthesizing 26 factors measured in this study, the effect was shown from 11.0 m of the forest interior to 22.4 m of the open space. In the result of stand ordination, Rhododendron mucronulatum, R. schlippenbachii, and Fraxinus sieboldiana dominated arrangement of forest interior sites and Quercus mongolica, Vitis amurensis, and Rubus crataegifolius dominated spatial distribution of the open area plots. Conclusions: Forest interior habitat lies within the influence of both abiotic and biotic edge effects. Therefore, we need a forest management strategy to sustain the stability of the plant and further animal communities that depend on its stable conditions. For protecting forest interior, we recommend selective logging as a harvesting method for minimizing edge effects by anthropogenic disturbance. In fact, it was known that selective logging contributes to control light availability and wind regime, which are key factors affecting microclimate. In addition, ecological restoration applying protective planting for the remaining forest in the clear-cut area could contribute to prevent continuous disturbance in forest interior.

Stand Structure and Seedling Recruitment of Abies holophylla Stands in Yong-In Area, Gyeonggi (경기도 용인 지역 전나무 임분의 구조 및 천연 갱신)

  • Park, Pil-Sun;Jeon, Yoon-Goo
    • Journal of Korean Society of Forest Science
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    • v.99 no.1
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    • pp.153-162
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    • 2010
  • Abies holophylla Maxim. is a shade tolerant species that has potential to be used for continuous cover forestry system. Stand structure and natural regeneration of A. holophylla stands in Yong-In area located in the central part of Korea was investigated to estimate the self sustainability of A. holophylla plantation. Species composition, diameter at breast height (DBH) and height distribution of trees larger than 2 cm DBH were measured in ten stands in three study sites of Jeongsu-ri, Daedae-ri, and Hodong. Species and coverage of shrub layer, and A. holophylla seedlings were also investigated. While A. holophylla in non-managed stands (Jengsuri and Daedae-ri study sites) had the importance value of 40% and showed continuous diameter and age distribution, A. holophylla in Hodong site had narrow bell-shaped DBH distribution mostly concentrating between 25-35 cm DBH classes, and single canopy structure. Abies holophylla stands in Hodong have experienced occasional thinning and selective cutting. The correlation coefficient between age-DBH was significant but low ($R^2$=0.2, P=0.03), and similar aged A. holophylla had diverse DBH values. Continuos DBH distribution and multi-canopy structure of A. holophylla stands in Jeongsu-ri site show that natural regeneration of A. holophylla has been continuously occurred in this area. Seedling density of A. holophylla was between 2000 and 33000/ha, however, the number of trees in 2-5 cm DBH class was only 40-150 trees/ha, implying that the survival rate of seedlings is not high. Continuous natural regeneration and 0.6 cm/year of diameter growth rate of A. holophylla indicate that this area could be an appropriate habitat for this species, and A. holophylla plantation in this region seem to persist suggesting the possibility of managing the stands for continuous cover forestry system as well as selective harvesting practices.

Characteristics of Breeding Birds Community in Relation to the Forest Environment in Deogyusan National Park (덕유산국립공원의 산림환경에 따른 번식기 조류군집 특성)

  • Yu, Jae-Pyoung;Jin, Seon-Deok;Kim, Hyoun-Sook;Lee, Joon-Woo;Paek, Woon-Kee;Song, Ho-Kyung
    • Korean Journal of Environment and Ecology
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    • v.25 no.2
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    • pp.132-144
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    • 2011
  • We studied the forest environment and characteristics of bird community between April and September of 2010 on the Hyangjeokbong area(A), Baekryunsa area(B) and Anseong area(C), all in the Deogyusan National Park. Hyangjeokbong area of the high latitude ridge was characterized by the Taxus cuspidata and Abies koreana etc., and deciduous broadleaf forest species, such as the Quercus mongolica, with abundance of subalpine zone coniferous trees, the Hemerocallis fulva and the Rhododendron schlippenbachii, while the areas Baekryunsa and Anseong were primarily characterized by deciduous broadleaf forests, with the valleys showing Fraxinus mandshurica colonies. In terms of the DBH(diameter at breast height) of trees, between 11 and 20cm showed the highest frequencies, while over 30cm was the highest in Baekryunsa area and the lowest in Hyangjeokbong area. Furthermore, in terms of coverage in relation to layers, in Hyangjeokbong area, the coverage volume of the lower layer was very high, in Baekryunsa area, the coverage volume of the middle layer between 8 and 12m was the highest, and in Anseong area, the coverage volume of the upper layer over 18m was the highest. A total of 53 bird species were observed during the study period at the Deogyusan National Park. The numbers of species and density of areas were 25 species and 45.20 Ind./km for Hyangjeokbong area, 50 species and 58.63 Ind./km for Baekryunsa area and 35 species and 66.89 Ind./km for Anseong area, with Baekryunsa area showing the highest number of species and Anseong area showing the highest level of density. In terms of dominant species, in Hyangjeokbong area, Cettia diphone, along with species which inhabit in grassland and shrubs, were the dominant species, and species which live in the canopy layer, including the Aegithalos caudatus, were found to be dominant in Baekryunsa and Anseong areas. For guild structure, bush nesting guild and bush foraging guild species were the highest in all areas, and the hole nesting guild and the air foraging guild species showed the lowest proportion. This seems to be the result of the low number of trees with diameter at breast height of over 30cm, which results in the lack of nesting grounds for hole nesting guild species.

A Measurement of Splash Erosion Under Natural Rainfall (야외(野外)에서 Splash Erosion 측정(測定)에 관한 연구(硏究))

  • Shin, Jae-Sung;Ko, Mun-Hwan;Im, Jeong-Nam
    • Korean Journal of Soil Science and Fertilizer
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    • v.14 no.3
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    • pp.104-109
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    • 1981
  • The experiment was designed to measure splash erosion and to investigate the relationships between soil detachment, kinetic energy and C factor at various soils and crops under the natural rainfall, using the modified Ellison cup. The results obtained were as follows: 1. Splash erosion increased as the texture was coarser, reaching a maximum amount in loamy sand of 12.6ton/10a/year, 9.7ton for loam, 9.0ton for sandy loam, and 7.0ton for clay loam. 2. Splash erosion positively related to kinetic energy ($EI_{30}$) but negatively to K value. 3. A considerable relationship between splash erosion and kinetic energy was observed under coverage less than 50%; however, it decreased with increasing canopy resulting in no relation over 90% coverage. The amount of soil detachment by natural rainfall ranged from 10 to 15ton/10a at various cropping systems. 4. The particle size distribution of splashed soil was similar to that of original one and fine sand($250-100{\mu}$) marked the highest detachment and splash.

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Differences in Population Density of 3 Rodent Species Between Natural Restored and Red Pine Silvicultured Forests after Forest fire (산불피해 후 자연복원과 소나무 조림을 실시한 지역에서 설치류 3종의 개체군 밀도 차이)

  • Lee, Eun-Jae;Son, Seung-Hun;Lee, Woo-Shin;Eo, Soo-Hyung;Rhim, Shin-Jae
    • Journal of Korean Society of Forest Science
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    • v.99 no.4
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    • pp.553-558
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    • 2010
  • This study was conducted to clarify the differences in rodents population densities between natural restored and red pine silvicultured forests after forest fire in Samcheok, Gangwon Province, Korea from March to December 2008. One ha size of 3 study plots were set up in each natural restored and silvicultured stand. We trapped the small rodents during 4 consecutive nights every 2 months in each stand. Understory coverage and number of shrub stems were higher in silvicultured stand than in natural restored stand. Coverage of overstory, suboverstory and midstory, number of tree stem, woody seedling stems and dead wood, and amount of coarse woody debris were higher in natural restored stand than in silvicultured stand. Six hundred eighty eight individuals of four species, such as Apodemus agrarius, A. peninsulae, Eothenomys regulus and Tamias sibiricus were captured in our study. Number of captured small rodents were higher in natural restored stand than in silvicultured stand. Also, species compositions were differed in both stands. The captured number of A. agrarius and A. peninsulae were most highest in April and December. E. regulus were shown higher number of captured in April and June, and T. sibiricus were in June and October. Removal of coarse woody debris and silvicultural practice would not be good for the inhabitation of small rodents. For the conservation of small rodents diversity, management of understory and canopy would be needed in forest fired area.