• The Plant Pathology Journal
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• 제37권2호
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• pp.194-199
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• 2021

Blackleg is a serious disease in Brassica plants, causing moderate to severe yield losses in rapeseed worldwide. Although China has not suffered from this disease yet (more aggressive Leptosphaeria maculans is not present yet), it is crucial to take provisions in breeding for disease resistance to have excellent blackleg-resistant cultivars already in the fields or in the breeding pipeline. The most efficient strategy for controlling this disease is breeding plants with identified resistance genes. We selected 135 rapeseed accessions in Sichuan, including 30 parental materials and 105 hybrids, and we determined their glucosinolate and erucic acid content and confirmed 17 double-low materials. A recently developed single-nucleotide polymorphism (SNP) marker, SNP_208, was used to genotype allelic Rlm1/rlm1 on chromosome A07, and 87 AvrLm1-resistant materials. Combined with the above-mentioned seed quality data, we identified 11 AvrLm1-resistant double-low rapeseed accessions, including nine parental materials and two hybrids. This study lays the foundation of specific R gene-oriented breeding, in the case that the aggressive Leptosphaeria maculans invades and establishes in China in the future and a robust and less labor consuming method to identify resistance in canola germplasm.

• Animal Bioscience
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• 제34권9호
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• pp.1451-1459
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• 2021

Objective: The objectives of the study were to evaluate reproductive performance and selection response through genetic trend of community-based breeding programs (CBBPs) of Bonga sheep. Methods: Reproduction traits data were collected between 2012 and 2018 from Bonga sheep CBBPs. Phenotypic performance was analyzed using the general linear model procedures of Statistical Analysis System. Genetic parameters were estimated by univariate animal model for age at first lambing (AFL) and repeatability models for lambing interval (LI), litter size (LS), and annual reproductive rate (ARR) traits using restricted maximum likelihood method of WOMBAT. For correlations bivariate animal model was used. Best model was chosen based on likelihood ratio test. The genetic trends were estimated by the weighted regression of the average breeding value of the animals on the year of birth/lambing. Results: The overall least squares mean±standard error of AFL, LI, LS, and ARR were 375±12.5, 284±9.9, 1.45±0.010, and 2.31±0.050, respectively. Direct heritability estimates for AFL, LI, LS, and ARR were 0.07±0.190, 0.06±0.120, 0.18±0.070, and 0.25±0.203, respectively. The low heritability for both AFL and LI showed that these traits respond little to selection programs but rather highly depend on animal management options. The annual genetic gains were -0.0281 days, -0.016 days, -0.0002 lambs and 0.0003 lambs for AFL, LI, LS, and ARR, respectively. Conclusion: Implications of the result to future improvement programs were improving management of animals, conservation of prolific flocks and out scaling the CBBP to get better results.

• 한국동물생명공학회지
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• 제38권1호
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• pp.32-37
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• 2023

This study has evaluated the genomic estimated breeding value (GEBV) of the commercial Hanwoo population using the genomic best linear unbiased prediction (GBLUP) method and genomic information. Furthermore, it analyzed the accuracy and realized accuracy of the GEBV. 1,740 heads of the Hanwoo population which were analyzed using a single nucleotide polymorphism (SNP) Chip has selected as the test population. For carcass weight (CWT), eye muscle area (EMA), back fat thickness (BFT), and marbling score (MS), the mean GEBVs estimated using the GBLUP method were 3.819, 0.740, -0.248, and 0.041, respectively and the accuracy of each trait was 0.743, 0.728, 0.737, and 0.765, respectively. The accuracy of the breeding value was affected by heritability. The accuracy was estimated to be low in EMA with low heritability and high in MS with high heritability. Realized accuracy values of 0.522, 0.404, 0.444, and 0.539 for CWT, EMA, BFT, and MS, respectively, showing the same pattern as the accuracy value. The results of this study suggest that the breeding value of each individual can be estimated with higher accuracy by estimating the GEBV using the genomic information of 18,499 reference populations. If this method is used and applied to individual selection in a commercial Hanwoo population, more precise and economical individual selection is possible. In addition, continuous verification of the GBLUP model and establishment of a reference population suitable for commercial Hanwoo populations in Korea will enable a more accurate evaluation of individuals.

• 한국수정란이식학회지
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• 제31권3호
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• pp.249-254
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• 2016

It is imperious to know the reproductive parameters of the subsisting swine breed for profitable farming in Bangladesh. This study was designed to compare the reproductive parameters of sows at hilly areas between the local and crossbred at farm and backyard level. A total of 116 breedable sows were included. The data on age at puberty, litter size, birth weight, weaning weight, gestation length, interval between farrowing and number of piglets born per sow in local and crossbred sows were determined and direct questionnaire method was used for data collection. The present study revealed that age at puberty between farm and backyard system of crossbred sows was $8.88{\pm}0.153$ and $9.85{\pm}0.221$ months, respectively. The farrowing interval was shorter in crossbred sows which were kept in farming system rather than backyard system. The interval between farrowing and onset of estrus was shorter in crossbred sows. The gestation length was almost similar between backyard and farm condition. The number of litter size per sow per farrowing was $8.45{\pm}0.41$ in crossbred and $7.17{\pm}0.250$ in local pigs at backyard system. The birth weight and weaning weight were more in farm conditions than backyard system. The age at puberty in local breed was lower than the crossbred and litter size was $8.45{\pm}0.407$ in crossbred which was higher than local breed $7.17{\pm}0.250$ in backyard system. These results suggest that reproductive parameters of local sow need to be improved for better production and crossbred sows should be reared for obtaining desired productivity.

• 원예과학기술지
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• 제35권4호
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• pp.465-479
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• 2017

Chili pepper (Capsicum annuum L.) is an economically important horticultural crop in Korea; however, various diseases, including Phytophthora root rot, anthracnose, powdery mildew, Cucumber mosaic virus (CMV), Pepper mild mottle virus (PMMoV), and Pepper mottle virus (PepMoV), severely affect their productivity and quality. Therefore, pepper varieties with resistance to multiple diseases are highly desired. In this study, we developed 20 SNP type assays for three pepper populations using Fluidigm nanofluidic dynamic arrays. A total of 4,608 data points can be produced with a 192.24 dynamic array consisting of 192 samples and 24 SNP markers. The assays were converted from previously developed sequence-tagged-site (STS) markers and included markers for resistance to Phytophthora root rot (M3-2 and M3-3), anthracnose (CcR9, CA09g12180, CA09g19170, CA12g17210, and CA12g19240), powdery mildew (Ltr4.1-40344, Ltr4.2-56301, and Ltr4.2-585119), bacterial spot (Bs2), CMV (Cmr1-2), PMMoV (L4), and PepMoV (pvr1 and pvr2-123457), as well as for capsaicinoids content (qcap3.1-40134, qcap6.1-299931, qcap6.1-589160, qdhc2.1-1335057, and qdhc2.2-43829). In addition, 11 assays were validated through a comparison with the corresponding data of the STS markers. Furthermore, we successfully applied the assays to commercial $F_1$ cultivars and to our breeding lines. These 20 SNP type assays will be very useful for developing new superior pepper varieties with resistance to multiple diseases and a higher content of capsaicinoids for increased pungency.

• Journal of Animal Science and Technology
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• 제56권8호
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• pp.28.1-28.6
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• 2014

This study was conducted to estimate the effective population size using SNPs data of 240 Jeju horses that had raced at the Jeju racing park. Of the total 61,746 genotyped autosomal SNPs, 17,320 (28.1%) SNPs (missing genotype rate of >10%, minor allele frequency of <0.05 and Hardy-Weinberg equilibrium test P-value of < $10^{-6}$) were excluded after quality control processes. SNPs on the X and Y chromosomes and genotyped individuals with missing genotype rate over 10% were also excluded, and finally, 44,426 (71.9%) SNPs were selected and used for the analysis. The measures of the LD, square of correlation coefficient ($r^2$) between SNP pairs, were calculated for each allele and the effective population size was determined based on $r^2$ measures. The polymorphism information contents (PIC) and expected heterozygosity (HE) were 0.27 and 0.34, respectively. In LD, the most rapid decline was observed over the first 1 Mb. But $r^2$ decreased more slowly with increasing distance and was constant after 2 Mb of distance and the decline was almost linear with log-transformed distance. The average $r^2$ between adjacent SNP pairs ranged from 0.20 to 0.31 in each chromosome and whole average was 0.26, while the whole average $r^2$ between all SNP pairs was 0.02. We observed an initial pattern of decreasing $N_e$ and estimated values were closer to 41 at 1 ~ 5 generations ago. The effective population size (41 heads) estimated in this study seems to be large considering Jeju horse's population size (about 2,000 heads), but it should be interpreted with caution because of the technical limitations of the methods and sample size.

• 한국환경생태학회지
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• 제22권3호
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• pp.320-324
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• 2008

본 연구는 지리산국립공원에서 번식기동안 산림환경에 따른 번식조류들의 풍부도를 조사하여, 번식조류 풍부도에 영향을 미치는 요인들을 밝히고 조류서식지의 효과적 관리를 위한 기초 자료를 얻기 위해 실시하였다. 조사를 위하여 주등산로 4개소를 조사지로 선정하고 2007년 4월부터 8월까지 번식조류 및 산림환경 조사를 실시하였으며 그 결과는 다음과 같다. 지리산국립공원의 고도 300m부터 1900m에서 번식기동안 관찰된 조류는 총 33종이었으며, 전체 조사지점의 30%이상에서 출현한 13종과 종풍부도, 개체수풍부도로 회귀분석을 실시하였다. 단순회귀분석과 다중회귀분석으로 산림환경 인자들 중 조류들의 풍부도에 영향을 미치는 인자들을 분석한 결과 각 종들은 고도의 영향을 적게 받는 것으로 나타났다. 산림환경 인자들 중 교목층 12m이상 엽층피도율, 수구 관목층 엽층피도율, 경사도, 아교목층 4-2m 엽층피도율 등은 고도보다 더 많은 종의 풍부도 변화에 영향력 있는 인자들로 나타났다. 그러므로 지리산국립공원 번식기 조류의 보호 및 관리를 위해 교목층 12m이상 엽층피도율, 수고, 관목층 엽층피도율, 경사도, 아교목층 4-2m 엽층피도율 등의 유지 관리가 필요하다.

• 생명과학회지
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• 제28권1호
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• pp.130-139
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• 2018

말을 활용한 경주는 고대 유럽의 여러 국가들에서 마차 경주 혹은 산악 경주 등의 형태로 이루어졌으며, 고대 그리스 올림픽에서 마차 경주가 정식 종목으로 채택되었다. 서러브레드종은 17세기부터 속도, 체력, 그리고 경주 능력을 위해 선택적으로 교배되었다. 그 결과, 18세기부터 귀족들이 향유하는 스포츠로서 서러브레드종을 활용한 경주가 시행되었다. 이후 여러 국가에서 각기 다양한 형태로 발달하여 현재 크게 평지 경주, 장애물 경주, 마차 경주 등으로 발달하였다. 서러브레드 경주마는 300여 년 동안 강력한 선발 육종 전략에 의하여 선택되어 왔기에, 현재 우수한 경주 능력을 갖추고 있다. 말산업은 번식, 조련, 경마 등을 통하여 막대한 경제적 효과를 유발하기에, 말의 경주 능력을 유지하고 극대화하는 것이 필요하다. 최근에 많은 양의 게놈 데이터를 처리하기 위해 차세대 시퀀싱(Next Generation Sequencing; NGS)이 개발되었으며, 이 분석 기술의 현저한 발전을 토대로 우수한 형질을 가진 동물 육종 전략을 쉽게 수행 할 수 있게 되었다. 따라서 뛰어난 경주 능력을 가진 경주마를 선발 육종하기 위해서는 최신 유전체 분석 기술을 활용하는 전략이 필요하다. 본 논문에서는 경주마의 경주 능력을 향상시키기 의한 유전체 분석의 현재의 노력을 알아보고, 마지막으로 경주마와 제주마에서 유전체 분석을 활용하는 전략을 제안할 것이며, 대한민국의 생명자원인 제주마의 선발 육종 전략을 제안할 것이다. 말 산업은 기술, 사회 및 경제 분야에서 인간에게 강력한 파급 효과를 주는 동물 중 하나이다. 우리는 국내 고부가가치 말의 원천적인 유전 정보를 확보하고 선발 육종 할 수 있는 체계적인 기술을 확립하여 생산, 연구 업무 등에 대한 일자리 확보에 기여할 수 있기를 기대한다.

• Asian-Australasian Journal of Animal Sciences
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• 제28권1호
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• pp.69-78
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• 2015

A non-traditional forage-based protocol was employed to evaluate replacement heifer growth, fertility, and economics between small frame (SF, 3.50; n = 50) and large frame (LF, 5.56; n = 50) heifers using three increasing gain growth phases. Preceding an 85 d growing-breeding period (Phase 3; P3) the heifers were managed as a common group for Phases 1 and 2 (P1 and P2). During P1, heifers grazed common fields of unharvested corn and corn residue (total digestible nutrients [TDN] 56%) with supplemental hay. For P2, heifers grazed early spring crested wheatgrass pasture (CWG; TDN 62%) that was followed by the final P3 drylot growing and breeding period (TDN 68%). Small frame heifers were lighter at the end of P1 in May and at the start of P3 breeding in August (p = 0.0002). Percent of mature body weight (BW) at the end of P1 (209 d) was 48.7% and 46.8%, respectively, for the SF and LF heifers and the percent pubertal was lower for SF than for LF heifers (18.0% vs 40.0%; p = 0.02). At breeding initiation (P3), the percentage of mature BW was 57.8 and 57.2 and the percentage pubertal was 90.0 and 96.0 (p = 0.07) for the SF and LF heifers, respectively; a 5-fold increase for SF heifers. Breeding cycle pregnancy on days 21, 42, and 63, and total percent pregnant did not differ (p>0.10). In drylot, SF heifer dry matter intake (DMI) was 20.1% less (p = 0.001) and feed cost/d was 20.3% lower (p = 0.001), but feed cost/kg of gain did not differ between SF and LF heifers (p = 0.41). Economically important live animal measurements for muscling were measured in May and at the end of the study in October. SF heifers had greater L. dorsi muscle area per unit of BW than LF heifers (p = 0.03). Small frame heifer value was lower at weaning (p = 0.005) and the non-pregnant ending heifer value was lower for SF heifers than for the LF heifers (p = 0.005). However, the total development cost was lower for SF heifers (p = 0.001) and the net cost per pregnant heifer, after accounting for the sale of non-pregnant heifers, was lower for SF heifers (p = 0.004). These data suggest that high breeding efficiency can be attained among March-April born SF and LF virgin heifers when transitioned to a more favorable May-June calving period through the strategic use of grazed and harvested forages resulting in a lower net cost per pregnant SF heifer.

• 한국환경과학회지
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• 제25권12호
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• pp.1633-1641
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• 2016

Leptalina unicolor is a hesperiid butterfly with a restricted distribution in Korea, Japan, China, and Russia. Recently, the number of individuals is rapidly decreased in their natural habitat. This skipper has been classified as an endangered species in the 'Red Data Book', and according to an IUCN report, is under threat of extinction. Therefore, the conservation and restoration of this species both locally and globally are urgently needed. A population of L. unicolor was found in an unknown habitat in Jaeyaksan, Miryang, Gyeongsangnam-do, Korea in 2011, and these individuals were used in the present study. Here, the life cycle, characteristics of each instar larva and breeding information were determined by breeding L. unicolor in the laboratory from 2012 to 2015. The results indicated that L. unicolor occurs twice a year and over-winter as a fifth instar larva. A spring-form female individual laid $17.25{\pm}5.52eggs$, and summer form laid $29.00{\pm}5.86eggs$; it takes $53.79{\pm}0.73days$ for L. unicolor to develop from eggs to adults. After spawning, the eggs developed in $6.16{\pm}0.18days$, and larvae developed in $33.71{\pm}0.58days$; the pre-pupal stage to emergence required $14.22{\pm}0.31days$. Based on these results, we presented effective breeding information for the restoration and proliferation of the species. Several candidate plants species have been reported in the literature as a food source for L. unicolor, but we found that the preferred diet this butterfly was Miscanthus sinensis. The larvae could move easily when their preferred diet was planted in ${\geq}80%$ the cage floor area Year-round breeding was achieved by placing overwintering individuals in low temperatures in autumn. To our knowledge, this is the first study to the biology of L. unicolor in Korea, and the results of this study could be used as preliminary information for the conservation and restoration of this species in its natural habitat.