• Molecules and Cells
• /
• v.27 no.6
• /
• pp.629-634
• /
• 2009

G protein-coupled receptors (GPCRs) are part of multi-protein networks called 'receptosomes'. These GPCR interacting proteins (GIPs) in the receptosomes control the targeting, trafficking and signaling of GPCRs. PDZ domain proteins constitute the largest protein family among the GIPs, and the predominant function of the PDZ domain proteins is to assemble signaling pathway components into close proximity by recognition of the last four C-terminal amino acids of GPCRs. We present here a machine learning based approach for the identification of GPCR-binding PDZ domain proteins. In order to characterize the network of interactions between amino acid residues that contribute to the stability of the PDZ domain-ligand complex and to encode the complex into a feature vector, amino acid contact matrices and physicochemical distance matrix were constructed and adopted. This novel machine learning based method displayed high performance for the identification of PDZ domain-ligand interactions and allowed the identification of novel GPCR-PDZ domain protein interactions.

• Applied Biological Chemistry
• /
• v.46 no.4
• /
• pp.385-390
• /
• 2003

An antimicrobial peptide was purified from the roots of Phytolacca americana L. and was designated as PAMP-r. Purification was carried out by DEAE-cellulose anion exchange, sephadex G-75 gel filtration, Mono S cation exchange, and Resource RPC reverse phage chromatography. The molecular weight of PAMP-r was estimated to be about 4,900 Da by 15% SDS-PAGE under reducing condition. PAMP-r exhibited a broad spectrum of antimicrobial activity. PAMP-r was stable against heat and pH treatment; its activity was not diminished by the heat treatment up to $80^{\circ}C$ for 30 min, and it showed a pH stability in the range between pH 3.0 to pH 8.0.

• Journal of the Korea Institute of Military Science and Technology
• /
• v.9 no.3
• /
• pp.77-87
• /
• 2006

Micro- or nano-size particles are required to improve the combustion efficiency and stability in the case of solid explosives and propellants. The micro-structural properties of an energetic material strongly influence the combustion and explosion behavior. However, the traditional size reduction techniques, including milling, are not suitable for production of ultra-fine size particles. As an alternative to the traditional techniques, various re-crystallization processes based on supercritical fluids have recently been proposed. Supercritical fluids are fluids at temperatures and pressures above their critical point. In principle, they do not give problems of solvent contamination as they are completely released from the solute when the decompression occurs. Rapid Expansion Supercritical Solutions(RESS) and Supercritical Anti-Solvent Process(GAS/SAS) are representatives of a nano-size particle formation process of energetic materials using supercritical fluids. In this work, various fine particle formation processes using supercritical fluids are discussed and the results are presented.

• KSBB Journal
• /
• v.14 no.6
• /
• pp.737-741
• /
• 1999

Phenanthrene degrading bacteria were isolated from the petroleum contaminated soil near an oil tank. Four of 15 strains decreased surface tension of culture broth of phenanthrene-containing minimal media. H6, one of the isolated bacteria decreased surface tension of culture broth below 33 dyne/cm during growth on glucose. H6 was identified as Bacillus subtilis and biosurfactant produced by H6 was lipopeptide. The biosurfactant was produced at 0.13 g/L in the mineral medium containing 2% glucose. Critical micelle concentration(CMC) of the biosurfactant was 52 mg/L. Foaming power was similar to Tween 80 and dispersing power was superior to Tween 80m SDS and Brij30. High thermal stability and emulsion index were also observed.

• Korea-Australia Rheology Journal
• /
• v.14 no.2
• /
• pp.57-62
• /
• 2002

The sensitivity of the final filament to the ongoing sinusoidal disturbances has been Investigated in the viscoelastic spinning using frequency response method. Amplification ratios or gains of the spinline cross-sectional area at the take-up to any disturbances show resonant peaks along the frequency regime, where the frequencies at theme points directly correspond to the imaginary parts of the successive leading eigenvalues from the linear stability analysis. As shown in Jung et al. (1999) and Lee et al (2001), the sensitivity results on the effect of various process conditions such as spinline cooling and fluid viscoelasticity, obtained by dynamic transient simulation have been corroborated in this study. That is, increasing spinline cooling makes the system less sensitive to disturbances, thus stabilizes the spinning. Also, an increasing viscoelasticity for extension-thickening fluids decreases the sensitivity of the spinning. i.e., stabilizing the system, where, as it increases the sensitivity of the spinning of extension-thinning fluids. Furthermore, it has been found in the present study that the inertia force as one of secondary forces causes the system to be more stabile or less sensitive to process disturbances.

• Journal of Biomedical Engineering Research
• /
• v.36 no.6
• /
• pp.271-275
• /
• 2015

The aim of this study was to develop a multi-nozzle based bioprinting system for fabrication of three-dimensional (3D) biological structure. In this study, a thermoplastic biomaterial that has relatively high mechanical stability, polycaprolactone (PCL) was used to make the 3D structure. A multi-nozzle bioprinting system was designed to dispense thermoplastic biomaterial and hydrogel simultaneously. The system that consists of 3-axes of x-y-z motion control stage and a compartment for injection syringe control mounted on the stage has been developed. Also, it has 1-axis actuator for position change of nozzle. The controllability of the printed line width with PCL was tested as a representative performance index.

• Biotechnology and Bioprocess Engineering:BBE
• /
• v.8 no.3
• /
• pp.187-191
• /
• 2003

Proteolytic enzymes existing in plant cell cultured media are the major reason for the loss of secreted human granulocyte-macrophage colony-stimulating factor (hGM-CSF). The addition of pepstatin, aprotinin and PMSF relatively decreased the proteolytic degradation of hGM-CSF in a conditioned medium, but sufficient prevention against the proteolytic activity could not be obtained with chemical protease inhibitors. Gelatin, as a competitive substrate for protease, showed a stabilizing effect in a conditioned medium. Compared to the initial hGM-CSF concentration in a conditioned medium. with 10 g/L of gelatin, 68% of the hGM-CSF remained after 5 days. In a cell culture experiment, 5 g/L of gelatin significantly stimulated the hGM-CSF production and accumulation in culture media, with no growth inhibition. compared to the controls (4.72 $\mu\textrm{g}$/L), the extracellular hGM-CSF level could be increased to 39.78 $\mu\textrm{g}$/L with the addition of 5 g/L of gelatin.

• Macromolecular Research
• /
• v.16 no.3
• /
• pp.200-203
• /
• 2008

A conducting polymer layer was introduced into the pore surface of mesoporous carbon via vapor infiltration of a monomer and subsequent chemical oxidative polymerization. The polypyrrole, conducting polymer has attracted considerable attention due to the high electrical conductivity and stability under ambient conditions. The mesoporous carbon-polypyrrole nanocomposite exhibited the retained porous structure, such as mesoporous carbon with a three-dimensionally connected pore system after intercalation of the polypyrrole layer. In addition, the controllable addition of pyrrole monomer can provide the mesoporous carbon-polypyrrole nanocomposites with a tunable amount of polypyrrole and texture property. The polypyrrole layer improved the electrode performance in the electrochemical double layer capacitor. This improved electrochemical performance was attributed to the high surface area, open pore system with three-dimensionally interconnected mesopores, and reversible redox behavior of the conducting polypyrrole. Furthermore, the correlation between the amount of polypyrrole and capacitance was investigated to check the effect of the polypyrrole layer on the electrochemical performance.

• Advances in Energy Research
• /
• v.4 no.4
• /
• pp.255-274
• /
• 2016

This paper presents a novel symbiotic organisms search (SOS) algorithm to optimize both real power loss (RPL) and voltage stability limit (VSL) of a transmission network by controlling the variables such as unified power flow controller (UPFC) location, UPFC series injected voltage magnitude and phase angle and transformer taps simultaneously. Mathematically, this issue can be formulated as nonlinear equality and inequality constrained multi objective, multi variable optimization problem with a fitness function integrating both RPL and VSL. The symbiotic organisms search (SOS) algorithm is a nature inspired optimization method based on the biological interactions between the organisms in ecosystem. The advantage of SOS algorithm is that it requires a few control parameters compared to other meta-heuristic algorithms. The proposed SOS algorithm is applied for solving optimum control variables for both single objective and multi-objective optimization problems and tested on New England 39 bus test system. In the single objective optimization problem only RPL minimization is considered. The simulation results of the proposed algorithm have been compared with the results of the algorithms like interior point successive linear programming (IPSLP) and bacteria foraging algorithm (BFA) reported in the literature. The comparison results confirm the efficacy and superiority of the proposed method in optimizing both single and multi objective problems.

• Biotechnology and Bioprocess Engineering:BBE
• /
• v.11 no.1
• /
• pp.32-37
• /
• 2006

In this study, we have purified and characterized the membrane bound nitrate reductase obtained from the denitrifying bacteria, Ochrobactrum anthropi SY509, which was isolated from soil samples. O. anthropi SY509 can grow in minimal medium using nitrate as a nitrogen source. We achieved an overall purification rate of 15-fold from the protein extracted from the membrane fraction, with a recovery of approximately 12% of activity. The enzyme exhibited its highest level of activity at pH 5.5, and the activity was increased up to $70^{\circ}C$. Periplasmic and cytochromic proteins, including nitrite and nitrous oxide reductase, were excluded during centrifugation and were verified using enzyme essay. Reduced methyl viologen was determined to be the most efficient electron donor among a variety of anionic and cationic dyestuffs, which could be also used as an electron donor with dimethyl dithionite. The effects of purification and storage conditions on the stability of enzyme were also investigated. The activity of the membranebound nitrate reductase was stably maintained for over 2 weeks in solution. To maintain the stability of enzyme, the cell was disrupted using sonication at low temperatures, and enzyme was extracted by hot water without any surfactant. The purified enzyme was stored in solution with no salt to prevent any significant losses in activity levels.