• 제목/요약/키워드: biological markers

검색결과 495건 처리시간 0.026초

RAPD 및 ITS 염기서열 분석을 이용한 곰취 속(Ligularia) 식물의 유연관계 분석 (Phylogenetic Relationship of Ligularia Species Based on RAPD and ITS Sequences Analyses)

  • 안순영;조광수;유기억;서종택
    • 원예과학기술지
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    • 제28권4호
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    • pp.638-647
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    • 2010
  • RAPD와 ITS 염기서열 분석을 통하여 $Ligularia$ 속 식물 5종류의 유연관계를 밝혔다. RAPD 분석에서는 총 196개의 random primer를 사용하여 밴드수가 많고 선명한 63개의 primer를 선발하였다. 다형성을 나타낸 밴드는 141개(31.8%)이었으며, 증폭된 크기는 0.2-1.6kb로 다양하였다. 유집 분석 결과, 유사도 값은 0.54-0.95의 범위로 나타났고, 0.77을 기준으로 크게 5그룹으로 나누었다. ITS 영역의 염기서열 분석 결과, ITS 1과 ITS 2 지역은 각각 248-256bp와, 220-222bp로 구성되어 있으며, 5.8S 부분은 164bp로 나타났다. ITS 1과 ITS 2 지역의 총 478개의 염기 중 49(10.2%)군데에서 변이가 있었으며, 구아닌(G)과 시토신(C)의 비율은 ITS 1 지역에서 49.4%, ITS 2에서는 53.5%로 나타났다. 염기서열 분석결과 5종류는 단계통을 형성하였으며, 갯취는 군외군으로 부터 가장 먼저 분계조를 형성하였다. 한대리곰취와 어리곤달비는 79%의 지지율을 가지고 유집되었으며, 곰취와 곤달비도 함께 유집되었지만 지지도는 52%로 낮았다. 이상의 결과에서 두 데이터는 일치하는 결과를 보였지만 한 대리 곰취의 분류학적 위치는 RAPD와 ITS 분석결과가 일치하지 않았다.

침수 처리에 따른 B73 옥수수의 생육 반응 및 유전자 발현 분석 (Analysis of Growth Response and Gene Expression by Waterlogging Stress on B73 Maize)

  • 고영삼;김정태;배환희;손범영;이기범;하준영;김선림;백성범
    • 한국작물학회지
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    • 제65권2호
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    • pp.104-112
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    • 2020
  • 본 실험은 옥수수(B73)에서 습해에 대한 생육 특성 변화와 습해 관련 유전자 발현 양상을 조사하여 내습성 옥수수 마커 개발을 위한 기초자료로 활용하고자 수행되었다. 1. 침수 처리구에서 초장(21.3%), 근장(50.6%), 잎 및 뿌리의 무게(21.6%), 잎의 SPAD 값(55.7%) 및 엽록소 함량(35.3%)은 감소하였고, 뿌리의 ROS의 함량은 2시간까지 46.5% 증가하다가 6시간 후에는 차이가 발생하지 않았다. 2. 뿌리 두께가 대조구에 비해 습해 처리구에서 2.5배이상 증가하였고, 뿌리 피층에 다수의 통기조직이 형성되었다. 3. 통기조직 형성(EXP1)과 에틸렌 생합성에 관련된 유전자(EREBP105) 등 습해 관련 유전자 7개가 습해 처리구에서 2.5배 이상 발현이 증가되는 것을 Microarray 분석을 통해 선별하고 RT-PCR을 통해 확인하였다.

Development and Characterization of an Anti-Acne Gel Containing Siamese Crocodile (Crocodylus siamensis) Leukocyte Extract

  • Phupiewkham, Weeraya;Lu, Qiumin;Payoungkiattikun, Wisarut;Temsiripong, Threeranan;Jangpromma, Nisachon;Lai, Ren;Klaynongsruang, Sompong
    • Journal of Microbiology and Biotechnology
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    • 제28권5호
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    • pp.707-717
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    • 2018
  • Leukocytes are reportedly the first line of the innate immune defense and essential for the control of common bacterial infections. Therefore, in this work, the antibacterial activity of crocodile leukocyte extract against Propionibacterium acnes was evaluated, and we also characterized the related activity of skin infection. The leukocyte extract showed the minimum inhibitory concentration to be $100{\mu}g/ml$ to P. acnes. SEM imaging demonstrated that the leukocyte extract adversely affected P. acnes cell permeability in a concentration-dependent manner. Furthermore, the crocodile leukocyte extract could significantly reduce proinflammatory markers and decrease inflammatory signs in infected mouse ears. The crude leukocyte extract was further purified using FPLC and RP-HPLC. The resulting fraction F5 was indicated as the anti-acne peptide-containing fraction. The molecular mass of the peptide contained in F5 was calculated to be 4,790.5 Da. N-Terminal sequencing revealed the amino acid sequence as GPEPVPAIYQ, which displays similarities to immunoglobulin A and leucine-rich repeat neuronal protein. This is the first reported amino acid sequence of a crocodile leukocyte extract that possesses anti-acne activity. To attempt to use it in a prototype cosmetic, an anti-acne gel containing crude crocodile leukocyte extract was formulated, resulting in seven gel formulations (G1, G2, G3, G4, G5, G6, and G7). The formulations G5, G6, and G7 exhibited 2-fold higher anti-acne activity than G1-G4. Investigation of accelerating stability studies of anti-acne gel formulations G5, G6, and G7 demonstrated that a low storage temperature ($4^{\circ}C$) is suitable for maintaining the physical properties and biological activity of the anti-acne gel products.

EphB1 and Ephrin-B, New Potential Biomarkers for Squamous Cell/adenosquamous Carcinomas and Adenocarcinomas of the Gallbladder

  • Yuan, Yuan;Yang, Zhu-Lin;Miao, Xiong-Ying;Liu, Zi-Ru;Li, Dai-Qiang;Zou, Qiong;Li, Jing-He;Liang, Lu-Feng;Zeng, Gui-Xiang;Chen, Sen-Lin
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권3호
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    • pp.1441-1446
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    • 2014
  • Squamous cell/adenosquamous carcinoma (SC/ASC) of the gallbladder are rare tumors and there are few clinical reports in the literature. Herein we report our clinical experience with 46 patients with SC/ASC and 80 with adenocarcinoma (AC). Expression of EphB1 and Ephrin-B in each tumor was determined using immunohistochemical methods for determination of correlations with prognosis. There was no difference in EphB1 and Ephrin-B expression between SC/ASC and AC tumors (P>0.05), but greater expression in those less than 3 cm in diameter, stage I or II (TNM stage), with no lymph node metastases, with no local invasion and treated with radical resection was apparent. Expression of EphB1 (P<0.05) and Ephrin-B (P<0.01) was higher in well differentiated than in poorly differentiated AC tumors. Kaplan-Meier survival analysis indicated that degree of differentiation, tumor diameter, lymph node metastases, local invasion, surgical approach and expression rate of EphB1 and Ephrin-B were closely related to the survival of SC/ASC (P<0.05) and AC patients (P<0.01). Patients with tumors that positive expressed EphB1 and Ephrin-B, whether it is SC/ASC ($P_{SC/ASC}$ =0.000) or AC ($P_{AC}$ =0.000 or $P_{AC}$ =0.002) had longer survival than those negative expression. Cox multivariate analysis indicated a negative correlation between expression of EphB1 or Ephrin-B and overall survival. Hence, EphB1 and Ephrin-B could be regarded as independent good prognostic factorsand important biological markers for SC/ASC and AC of gallbladder.

Clinical Significance of Detecting Lymphatic and Blood Vessel Invasion in Stage II Colon Cancer Using Markers D2-40 and CD34 in Combination

  • Lai, Jin-Huo;Zhou, Yong-Jian;Bin, Du;Qiangchen, Qiangchen;Wang, Shao-Yuan
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권3호
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    • pp.1363-1367
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    • 2014
  • This research was conducted to compare differences in colon cancer lymphatic vessel invasion (LVI) with D2-40 antibody labeling and regular HE staining, blood vessel invasion (BVI) with CD34 antibody labeling and HE staining and to assess the possibility of using D2-40-LVI/CD34-BVI in combination for predicting stage II colon cancer prognosis and guiding adjuvant chemotherapy.Anti-D2-40 and anti-CD34 antibodies were applied to tissue samples of 220 cases of stage II colon cancer to label lymphatic vessels and small blood vessels, respectively. LVI and BVI were assessed and multivariate COX regression analysis was performed for associations with colon cancer prognosis. Regular HE staining proved unable to differentiate lymphatic vessels from blood vessels, while D2-40 selectively labeled lymphatic endothelial cell cytosol and CD34 was widely expressed in large and small blood vessels of tumors as well as normal tissues. Compared to regular HE staining, D2-40-labeling for LVI and CD34-labeling for BVI significantly increased positive rate (22.3% vs 10.0% for LVI, and 19.1% vs 9.1% for BVI). Multivariate analysis indicated that TNM stage, pathology tissue type, post-surgery adjuvant chemotherapy, D2-40-LVI, and CD34-BVI were independent factors affecting whole group colon cancer prognosis, while HE staining-BVI, HE staining-LVI were not significantly related. When CD34-BVI/D2-40-LVI were used in combination for detection, the risk of death for patients with two or one positive results was 5.003 times that in the LVI(-)&BVI(-) group (95% CI 2.365 - 9.679). D2-40 antibody LVI labeling and CD34 antibody BVI labeling have higher specificity and accuracy than regular HE staining and can be used as molecular biological indicators for prognosis prediction and guidance of adjuvant chemotherapy for stage II colon cancer.

한국 재래뽕의 생태 및 품종간 특이성에 관한 연구 (Morphological and Biochemical Characteristics in the Korean Landraces of Mulberry Tree, Morus)

  • 김현복;김남수;박광준
    • 한국잠사곤충학회지
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    • 제38권2호
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    • pp.81-92
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    • 1996
  • 1. 우리나라 재래뽕과 육성종 30품종에 대한 재배 생태학적 조사를 한 결과는 다음과 같다. 올뽕에 속한 것은 금상, 조상1호, 영변추우, 순천뽕, 당상3호, 대당상이고 당상6호, 황추우, 영변교, 당상4호, 당상5호는 늦뽕이었다. 가지끝마름률은 당상8호, 덕천뽕, 금상, 용천뽕, 영변추우, 수계뽕, 조선상, 강원3호, 조상1호이었다. 연간수량은 순천뽕, 당상7호, 황추우가 비교적 높았다. 그루당 가지수는 금상, 정선뽕, 순천뽕, 용천뽕이 많았고, 평균가지길이에서는 자산, 강원3호가 길었으며 절간장이 짧고 측지가 적은 품종으로서는 수원뽕, 영변교, 순청뽕, 당상5호, 당상6호이었다. 2. 우리나라 재래뽕 및 육성종 30품종과 장려뽕 15품종의 peroxidase, acid phosphatase, malate dehydrogenase, glutamate dehydrogenase isozymes을 분석한 결과 품종간 특이성이 나타난 효소종은 peroxidase 뿐이었으며, acid phosphatase는 희미한 band 출현상황만 확인할 수 있었을 뿐 품종간 특이성은 나타나지 않았다. Malate dehydrogenase와 glutamate dehydrogenase isozyme에 있어서는 어떠한 band도 출현하지 않았다. 3. 뽕품종을 RAPD 분석한 결과 상당히 많은 유전적 변이를 찾을 수 있었다. 다섯개의 random decamer primer를 사용하여 분석한 결과 PCR 증폭된 DNA의 단편은 5개에서부터 13개까지 primer에 따라 달랐으며, 이들간의 뚜렷한 구분은 없었다. 4. 가장 유연정도가 높은 품종들은 수원상 1호와 수원상 2호로서 이들의 유연정도는 90%정도였으며 여타 품종들과 가장 유연정도가 낮은 품종은 재래뽕들 중 은척뽕으로서 이는 60%정도에서 다른 품종들과 유연을 이루었다.

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Prognostic implications of tumor volume response and COX-2 expression change during radiotherapy in cervical cancer patients

  • Noh, Jae Myoung;Park, Won;Huh, Seung Jae;Cho, Eun Yoon;Choi, Yoon-La;Bae, Duk Soo;Kim, Byoung-Gie
    • Radiation Oncology Journal
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    • 제30권4호
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    • pp.218-225
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    • 2012
  • Purpose: The relationship between treatment outcomes, alteration of the expression of biological markers, and tumor volume response during radiotherapy (RT) in patients with uterine cervical cancer was analyzed. Materials and Methods: Twenty patients with cervical squamous cell carcinoma received definitive RT with (n = 17) or without (n = 3) concurrent chemotherapy. Tumor volumes were measured by three serial magnetic resonance imaging scans at pre-, mid-, and post-RT. Two serial punch biopsies were performed at pre- and mid-RT, and immunohistochemical staining for cyclooxygenase (COX)-2 and epidermal growth factor receptor was performed. The median follow-up duration was 60 months. Results: The median tumor volume response at mid-RT (V2R) was 0.396 (range, 0.136 to 0.983). At mid-RT, an interval increase in the distribution of immunoreactivity for COX-2 was observed in 8 patients, and 6 of them showed poor mid-RT tumor volume response ($V2R{\geq}0.4$). Four (20%) patients experienced disease progression after 10 to 12 months (median, 11 months). All 4 patients had poor mid-RT tumor volume response (p = 0.0867) and 3 of them had an interval increase in COX-2 expression. Overall survival (OS) and progression-free survival (PFS) decreased in patients with $V2R{\geq}0.4$ (p = 0.0291 for both). An interval increase in COX-2 expression at mid-RT was also associated with a decreased survival (p = 0.1878 and 0.1845 for OS and PFS, respectively). Conclusion: Poor tumor volume response and an interval increase in COX-2 expression at mid-RT decreased survival outcomes in patients with uterine cervical cancer.

Factors Affecting Prognosis in Metastatic Colorectal Cancer Patients

  • Eker, Baki;Ozaslan, Ersin;Karaca, Halit;Berk, Veli;Bozkurt, Oktay;Inanc, Mevlude;Duran, Ayse Ocak;Ozkan, Metin
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권7호
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    • pp.3015-3021
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    • 2015
  • Background: Colorectal cancer (CRC) is a major cause of mortality in developed countries, and it is the third most frequent malignancy in Turkey. There are many biological, genetic, molecular, and tissue-derived prognostic factors for CRCs. In this study, we evaluated prognostic factors in patients who were metastatic at diagnosis or progressed to metastatic disease during follow-up. Patients and Methods: This study included 116 patients with malignancies either in the colon or rectum. Of these, 65 had metastatic disease at diagnosis, and 51 progressed to metastatic disease during the course of the disease. The parameters evaluated were age, gender, comorbidity, performance status and stage of the disease at the beginning, localization, history of surgery, chemotherapy regimen, response to first-line treatment, K-RAS status, site and number of metastases, expression of tumor predictors (CEA, CA19-9), and survival times. A multivariate analysis conducted with factors that considered statistically significant in the univariate analysis. Findings: Median age was 56 (32-82) years and the male/female ratio was 80/36. Eleven patients were at stage II, 40 at stage III, and 65 at stage IV at diagnosis. Twenty three patients had tumor in the right colon, 48 in the left colon, and 45 in the rectum. Ninety seven patients were operated, and 27 had surgical metastasectomy. Ninety three patients received targeted therapy. At the end of follow-up, 61 patients had died, and 55 survived. Metastatic period survival times were longer in the adjuvant group, but the difference did not reach the level of statistical significance (adjuvant group: median 29 months, metastatic group: median 22 months; p=0.285). In the adjuvant group before the metastatic first-line therapy, CEA and CA 19-9 levels were significiantly lower compared to the metastatic group (p<0.005). We also found that patients with elevated tumor predictor (CEA, CA 19-9) levels before the first-line therapy had significiantly poorer prognosis and shorter survival time. Survival was significiantly better with the patients who were younger than 65 years of age, had better initial performance status, a history of primary surgery and metastatectomy, and single site of metastasis. Those who benefitted from the first-line therapy were K-RAS wild type and whose tumor markers (CEA, CA 19-9) were not elevated before the first line therapy. Conclusions: Among the patients with metastatic CRC, those who benefited from first-line therapy, had history of metastasectomy, were K-RAS wild type and had low CA 19-9 levels before the first-line therapy, showed better prognosis independent of other factors.

Detection of p53 Common Intron Polymorphisms in Patients with Gastritis Lesions from Iran

  • Sadeghi, Rouhallah Najjar;Damavand, Behzad;Vahedi, Mohsen;Mohebbi, Seyed Reza;Zojazi, Homayon;Molaei, Mahsa;Zali, Mohamad Reza
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권1호
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    • pp.91-96
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    • 2013
  • Background: p53 alterations have been implicated in the development of many cancers, such as gastric cancer, but there is no evidence of p53 intron alterations in gastritis lesions. The aim of this study was to investigate the p53 intron alterations in gastritis along with p53 and mismatch repair protein expression and microsatellite status. Materials and Methods: PCR-sequencing was conducted for introns 2-7 on DNA extracted from 97 paired samples of gastritis lesions and normal adjacent tissue. Abnormal accumulation of p53 and mismatch repair proteins was investigated using immunohistochemistry. In addition, microsatellite status was evaluated with reference to five mononucleotide markers. Results: Gastritis cases included 41 males and 56 females in the age range of 15-83 years, 87.6% being H.pylori positive. IVS2+38, IVS3ins16 and IVS7+72 were the most polymorphic sites. Their minor allele frequency values were as follows: 0.38, 0.21 and 0.06, respectively. Samples with GG genotype at IVS2+38 and CT at IVS7+72 had no insertion. Moreover, most of the stable samples (91.9 %) had a G allele at IVS2+38. All of the samples were IHC negative for p53 protein, microsatellite stable and expressed mismatch repair proteins. p53 alterations were prominent in the H. Pylori+ group, but without statistical significance. Conclusions: According to our results, some p53 polymorphisms such as IVS2+38, IVS3ins16 and IVS7+72, because of their correlations together or with microsatellite status may contribute to gastritis development. However, so far effects on p53 expression and function remain unclear. Therefore, a comprehensive survey is needed to delineate their biological significance.

Serum Cathepsin B to Cystatin C Ratio as a Potential Marker for the Diagnosis of Cholangiocarcinoma

  • Monsouvanh, Ammala;Proungvitaya, Tanakorn;Limpaiboon, Temduang;Wongkham, Chaisiri;Wongkham, Sopit;Luvira, Vor;Proungvitaya, Siriporn
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권21호
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    • pp.9511-9515
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    • 2014
  • Cholangiocarcinoma (CCA) is a cancer of the bile duct epithelial cells. The highest incidence rate of CCA with a poor prognosis and poor response to chemotherapy is found in Southeast Asian countries, especially in northeastern Thailand and Lao PDR. Cathepsin B is a lysosomal cysteine protease which is regulated by cysteine proteinase inhibitors such as cystatin C. Elevation of cathepsin B levels in biological fluid has been observed in patients with inflammatory diseases and many cancers. We aimed to investigate the serum cathepsin B and cystatin C levels of CCA patients to evaluate the feasibility of using cathepsin B and cystatin C as markers for the diagnosis of CCA. Fifty-six sera from CCA patients, 17 with benign biliary diseases (BBD) and 13 from controls were collected and the cathepsin B and cystatin C levels were determined. In addition, cathepsin B expression was investigated immunohistochemically for 9 matched-pairs of cancerous and adjacent tissues of CCA patients. Serum cathepsin B, but not cystatin C, was significantly higher in CCA and BBD patient groups compared to that in the control group. Consistently, all cancerous tissues strongly expressed cathepsin B while adjacent tissues were negative in 7 out of 9 cases. In contrast, serum cystatin C levels were comparable between CCA and control groups, although serum cystatin C levels in the BBD group was higher than that in the control or CCA groups. When the serum cathepsin B to cystatin C ratio was calculated, that of the CCA group was significantly higher than that of the control group, and, although statistically not significant, the ratio of CCA group showed a trend to be higher than that of the BBD group. Thus, the cathepsin B to cystatin C ratio might be used as an alternative marker for aiding diagnosis of CCA.