• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2000년도 추계학술발표대회 및 bio-venture fair
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• pp.489-492
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• 2000

The eventual goal of this study is to elucidate roles of plant terpenoids (e.g., cymene, limonene and others) as natural substrates in the cometabolic biodegradation of PCBs and to develop an effective PCB bioremediation technology. The aim of this study was to examine how plant terpenoids, as natural substrates or inducers would affect the biodegradation of PCB congeners. Various PCB degraders that could grow on biphenyl and several terpenoids were tested for their PCB degradation capabilities. The PCB congener degradation activities were first monitored through resting cell assay technique that could detect degradation products of the substrate. The congener removal was also confirmed by concommitant GC analysis. The PCB degraders, Pseudononas sp. P166 and Caynebacterium sp. T104 were found to grow on both biphenyl and terpenoids ((S)-(-) limonene, p-cymene and ${\alpha}-terpinene$) whereas Arthrobacter B1B could not grow on the terpenoids as a sole carbon source. The strain B1B grown on biphenyl showed a good degradation activity for 4,4'-dichlorobiphenyl (DCBp) while strains P166 and T104 gave about 25% of B1B activity. Induction of degradation by cymene, limonene and terpine was hardly detected by the resting cell assay technique. This appeared to be due to relatively lower induction effect of these terpenoids compared with biphenyl. However, a subsequent GC analysis showed that the congener could be removed up to 30% by the resting cells of T104 grown on the terpenoids. This indicates that terpenoids, widely distributed in nature, could be utilized as both growth and/or inducer substrate for PCB biodegradation.

• Journal of Microbiology and Biotechnology
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• 제19권11호
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• pp.1439-1446
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• 2009

Isocarbophos is a widely used organophosphorus insecticide that has caused environmental pollution in many areas. However, degradation of isocarbophos by pure cultures has not been extensively studied, and the degradation pathway has not been determined. In this paper, a highly effective isocarbophos-degrading strain, scl-2, was isolated from isocarbophos-polluted soil. The strain scl-2 was preliminarily identified as Arthrobacter sp. based on its morphological, physiological, and biochemical properties, as well as 16S rDNA analysis. The strain scl-2 could utilize isocarbophos as its sole source of carbon and phosphorus for growth. One hundred mg/l isocarbophos could be degraded to a non detectable level in 18 h by scl-2 in cell culture, and isofenphos-methyl, profenofos, and phosmet could also be degraded. During the degradation of isocarbophos, the metabolites isopropyl salicylate, salicylate, and gentisate were detected and identified based on MS/MS analysis and their retention times in HPLC. Transformation of gentisate to pyruvate and fumarate via maleylpyruvate and fumarylpyruvate was detected by assaying for the activities of gentisate 1,2-dioxygenase (GDO) and maleylpyruvate isomerase. Therefore, we have identified the degradation pathway of isocarbophos in Arthrobacter sp. scl-2 for the first time. This study highlights an important potential use of the strain scl-2 for the cleanup of environmental contamination by isocarbophos and presents a mechanism of isocarbophos metabolism.

• 미생물학회지
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• 제27권4호
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• pp.334-341
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• 1989

Toluate 분해 플라스미드를 pseudomonase cepacia SUB37에서 분리하여 분자량은 한천 젤 전기영동으로 측정한 결과 79. (119kb)로 확인되었다. 이 TOL플라스미드는 Pseudomonas의 다른 균주와 다른 속의 균주에 전달되었다. m-toluate 분해에서 가장 중요한 역할을 하는 catechol-2,3-oxygenase 활성을 P. cepacia SUB37과 transconjugant의 조효소액으로부터 측정한 결과, P. putida mt 2에서와 같이, meta pathway를 거쳐 m-toluate를 분해하는 유전자들이 plasmid에 암호화됨을 알수 있었다. P. cepacia SUB37 유래의 새로운 TOL plasmid는 IncP-4 불화합성군에 속하였고, 이것은 아마도 P. putida의 IncP-9 그룹의 TOL 플라스미드의 유도체로 사료된다.

• 한국미생물학회:학술대회논문집
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• 한국미생물학회 2001년도 추계학술대회
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• pp.157-163
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• 2001

Mycolic acid-containing gram-positive bacteria, so called nocardioform actinomycetes, have become a great interest to environmental microbiologists due to their metabolic versatility, multidegradative capacity and potential for bioremediation of priority pollutants. For example, Rhodococcus rhodochrous N75 was able to metabolize 4-methy1catechol via a modified $\beta$-ketoadipate pathway whereby 4-methylmuconolactone methyl isomerase catalyzes the conversion of 4-methylmuconolactone to 3-methylmuconolactone in order to circumvent the accumulation of the 'dead-end' metabolite, 4-methylmuconolactone. R. rhodochrous N75 has also shown the ability to transform a range of alkyl-substituted catechols to the corresponding muconolactones. A novel 3-methylmuconolactone-CoAsynthetase was found to be involved in the degradation of 3-methylmuconolactone, which is not mediated in a manner analogous to the classical $\beta$-ketoadipate pathway but activated by the addition of CoA prior to hydrolysis of lactone ring, suggesting that the degradative pathway for methylaromatic compounds by gram-positive bacteria diverges from that of proteobacteria. Mycobacterium sp. Strain PYR-l isolated from oil-contaminated soil was capable of mineralizing various polyaromatic hydrocarbons (PAHs), such as naphthalene, phenanthrene, pyrene, fluoranthrene, 1-nitropyrene, and 6-nitrochrysene. The pathways for degradation of PAHs by this organism have been elucidated through the isolation and characterization of chemical intermediates. 2-D gel electrophoresis of PAH-induced proteins enabled the cloning of the dioxygenase system containing a dehydrogenase, the dioxygenase small ($\beta$)-subunit, and the dioxygenase large ($\alpha$)-subunit. Phylogenetic analysis showed that the large a subunit did not cluster with most of the known sequences except for three newly described a subunits of dioxygenases from Rhodococcus spp. and Nocardioides spp. 2-D gel analysis also showed that catalase-peroxidase, which was induced with pyrene, plays a role in the PAH metabolism. The survival and performance of these bacteria raised the possibility that they can be excellent candidates for bioremediation purposes.

• 약학회지
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• 제31권5호
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• pp.280-285
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• 1987

There are three plausible bioconversion pathways in biodegradation mechanism of capsaicinoids; first, side chain degradation through $\omega$-hydroxylation and $\beta$-oxidation, secondly, aromatic ring hydroxylation, and lastly, hydrolysis on the acidaraide linkage. In microbes, it was reported that capsaicin and its synthetic, analog, nonoylvanillylamide(NVA), could be metabolized to N-vanillylcarbamoylbutyric acid via $\omega$-hydroxylation and consecutive $\beta$-oxidations by Aspergillus niger. In order to broaden the scope of microbial degradation of capsaicinoids, over thirty strains of various fungi including Aspergillus, Penicillum, Mycotypha, Gliocladium, Paecilomyces, Byssoclamys, Conidiobolus, Thamnidium, and Entomophthora. It was observed that almost all the strains examined oxidized, the side chain of capsaicids as A. niger did. These observations strongly support the notion that side chain degradation is the most dominant pathway in the microbial degradation of capsaicinoids.

• Journal of Microbiology and Biotechnology
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• 제22권10호
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• pp.1311-1323
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• 2012

In the present work, current knowledge on the potential fate, microbial degradation, and toxicity of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) was thoroughly reviewed, focusing on the toxicological assessment of a variety of potential RDX degradation pathways in bacteria and fungi. The present review on microbial degradation pathways and toxicities of degradation intermediates suggests that, among aerobic RDX degradation pathways, the one via denitration may be preferred in a toxicological perspective, and that among anaerobic pathways, those forming 4-nitro-2,4-diazabutanal (NDAB) via ring cleavage of 1-nitroso-3,5-dinitro-1,3,5-triazinane (MNX) may be toxicologically advantageous owing to its potential mineralization under partial or complete anoxic conditions. These findings provide important information on RDX-degrading microbial pathways, toxicologically most suitable to be stimulated in contaminated fields.

• 한국지하수토양환경학회지:지하수토양환경
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• 제11권1호
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• pp.1-6
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• 2006

환경 내에서 생물학적 복원을 이해하기 위해서는 미생물 기능성 군집 및 활성을 분석하는 것은 필수적이다. 본 연구에서는 유류오염 토양의 미생물 군집을 모니터링하기 위하여 난분해성 물질의 생물학적 분해에 관여하는 100개의 알려진 대사경로 및 유전자를 기반으로 한 oligonucleotide microarray를 개발하였다. 본 연구에 사용된 microarray는 유류오염 분해 대사에 관련된 유전자를 진단하기 위한 15개의 고유한 probe를 포함하고 있다. 디자인된 probe의 hybridization specificity는 표준 균주, Pseudomonas aeruginosa KCTC1636을 이용하여 확인 하였으며, 유류오염토양 시료의 분석결과 alkane, naphthalene, biphenyl, pyrene(PAH ring-hydroxylating) 분해에 관련된 8개의 유전자 발현을 확인 하였다. 이러한 결과는 DNA microarray가 유류오염토양환경에서 생물학적 분해유전자 진단에 효과적으로 이용될 수 있을 뿐만 아니라 생물학적 복원의 가능성을 진단하기에도 적합한 기법이라는 것을 나타내고 있다.

• 환경생물
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• 제18권3호
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• pp.307-313
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• 2000

석유화학 공업으로부터 생산되는 방향족 탄화수소 화합물질들은 여러 가지 산업과정에서 널리 활용되고 있으나, 자연계에 오염될 때에는 쉽게 분해되지 않는다는 점에서 환경 오염물질로 주목받고 있다. 방향족 탄화수소 물질의 미생물 분해는 산화반응에 의한 benzene고리의 개환으로부터 시작되기 때문에 이 개환 작용을 갖는 미생물의 분리와 함께 그 분해 기능을 연구하는 것은 매우 중요한 일이다. 본 연구에서는 여천 화학공업단지 폐수로부터 benzoate와 catechol 등의 방향족 탄화수소에 대하여 분해능이 우수한 균주를 분리하여 생화학적 특성과 세포 지방산 분석에 의하여 동정한 결과 Pseudomonas putida로 밝혀졌다. 따라서 이 균주를 Pseudomonas putida Z104라 명명한 후, benzoate와 catechol의 분해과정을 검토하였다. Pseudomonus putida Z104의 catechol분해능에 대하여 환경요소의 영향을 실험한 결과, 3$0^{\circ}C$와 pH 7.0 그리고 0.5mM의 농도에서 왕성한 세포의 생장과 catechol의 분해능을 보였으다. 그러므로 Z104 균주는 benzoate를 연속적으로 완전분해시키는 유전자를 모두 가지고 있다는 점에서 활용가치가 있는 균주라고 판단된다.

• 한국환경농학회지
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• 제29권4호
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• pp.388-395
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• 2010

미생물을 이용한 인삼 재배지 내 잔류 tolclofos-methyl의 효과적 분해를 목적으로, tolclofos-methyl에 대한 분해능을 보이는 미생물을 선발하였다. 선발된 미생물은 16S rDNA 염기서열분석을 통하여 Sphingomonas 속으로 동정되었다. 선발 미생물 Sphingomonas sp. 224는 1/10 농도의 LB 배지에 함유된 20 mg/L 농도의 tolclofos-methyl을 배양 72시간 이내에 95% 이상 분해하는 것으로 확인되었다. 또한 이 미생물이 tolclofos-methyl을 분해하여 얻어지는 산물로 2,6-dichloro-4-methyl phenol이 확인됨에 따라 미생물이 생산하는 가수분해 효소에 의한 분해 경로를 가지는 것으로 추정되었다. Tolclofos-methyl 분해 미생물 Sphingomonas sp. 224를 인삼경작지 토양에 처리하여 이들 토양에 잔류되어 있는 tolclofos-methyl에 대한 분해능을 확인 한 결과, 20 mg/Kg 농도의 토양 잔류 tolclofos-methyl에 대하여 14일 이내에 약 50%의 분해력을 보이는 것으로 확인되었다. 이것은 단일 미생물을 이용한 배지 및 토양 내 tolclofosmethyl의 생분해 효과를 처음으로 확인한 연구 결과이다.

• Journal of Microbiology and Biotechnology
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• 제31권7호
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• pp.999-1010
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• 2021

Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous in the environment. They are highly toxigenic and carcinogenic. Probiotic bacteria isolated from fermented foods were tested to check their ability to degrade and/or detoxify PAHs. Five probiotic bacteria with distinct morphologies were isolated from a mixture of 26 fermented foods co-cultured with benzo(a)pyrene (BaP) containing Bushnell Haas minimal broth. Among them, B. velezensis (PMC10) significantly reduced the abundance of BaP in the broth. PMC10 completely degraded BaP presented at a lower concentration in broth culture. B. velezensis also showed a clear zone of degradation on a BaP-coated Bushnell Haas agar plate. Gene expression profiling showed significant increases of PAH ring-hydroxylating dioxygenases and 4-hydroxybenzoate 3-monooxygenase genes in B. velezensis in response to BaP treatment. In addtion, both live and heat-killed B. velezensis removed BaP and naphthalene (Nap) from phosphate buffer solution. Live B. velezensis did not show any cytotoxicity to macrophage or human dermal fibroblast cells. Live-cell and cell-free supernatant of B. velezensis showed potential anti-inflammatory effects. Cell-free supernatant and extract of B. velezensis also showed free radical scavenging effects. These results highlight the prospective ability of B. velezensis to biodegrade and remove toxic PAHs from the human body and suggest that the biodegradation of BaP might be regulated by ring-hydroxylating dioxygenase-initiated metabolic pathway.