• Proceedings of the Korean Society of Applied Entomolohy Conference
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• 2004.05a
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• pp.146-146
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• 2004

• Proceedings of the Korean Society of Sericultural Science Conference
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• 2004.04a
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• pp.50-50
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• 2004

• Journal of Ecology and Environment
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• v.36 no.1
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• pp.39-47
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• 2013

The expression of transgenic traits in genetically modified crops is sometimes associated with decreases in crop performance or fitness. These decreases in performance or fitness of transgenic plants in unfavourable conditions may provide valuable information about the ecological consequences of transgene escape. In a glasshouse trial, we tested the cost associated with resistance to herbicides by comparing the growth, yield, and competitive ability of transgenic rice with its parental non-transgenic line. This new line was developed for constitutive overexpression of protoporphyrinogen oxidase (PPO) to increase resistance to herbicides. We evaluated nine agronomic traits of transgenic and non-transgenic rice grown in a replacement series design over four densities. Competitive ability was also assessed between transgenic and non-transgenic plants by analyzing their relative yields based on biomass and seed weight data. Our results indicated that non-transgenic plants showed greater performance than did the transgenic plants when those genotypes were grown in mixtures. The non-transgenic rice plants exhibited superior competitive ability at certain combinations of planting densities and genotype proportions. These results suggest that PPO-herbicide resistance incurs some costs in plant performance and competitive ability.

• Journal of Bio-Environment Control
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• v.10 no.2
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• pp.95-100
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• 2001

In countries that consumes rice as a main staple, rice hulls are natural resources composed of a large amount of organic compounds and high uniformity in size. Rice hulls are expanded to get rid of a defect in untreated rice hulls and to be used as a hydroponic substrate. Research on rice hulls is continuing for the agricultural application. This research was conducted to stabilize rhizosphere pH of the expanded rice hull substrates because of high pH caused by repeated use in ERH(expanded ride hull) substrates and without increasing the cost of developing new substrates. Sphagnum peatmoss (pH 3.0-4.0) wee mixed with the expanded rice hull substrate in the ratio of 10% (v/v), and this ratio kept the pH range of 6.0 to 6.5 in the root area of tomato plants during growth and at the time of harvest of tomato fruits. Also absorbtion of nutrients was highly increased. The yield increased from 1,051 to 1,266 kg per tomato plant which were harvested by two clusters.

• Korean Journal of Soil Science and Fertilizer
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• v.50 no.4
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• pp.259-274
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• 2017

To get some informations for sustainable paddy use, the productivities of soils with two years of cropping systems were estimated through pot experiment using two pretreated groups of not autoclaved 'natural'- and 'autoclaved'-soils without any fertilization. And then the relationship between the productivities, called yield potentials, and the characteristics of soils as affected by cropping systems, such as rice-rice (R-R), ricebarley-rice-barley (R-B-R-B), rice-barley-rice-wheat (R-B-R-W), soybean-barley-soybean-barley (S-B-S-B), of which barley and wheat were composted at a level of $10MT\;ha^{-1}$, and S-B-S-B without compost, was analyzed. These treatments were established in mid-mountainous loam paddy, which contained exchangeable Ca of $11.8cmol_c\;kg^{-1}$, located at the altitude of 285 m above sea level in Sangju of Korea. Crops for the estimation of soil productivity were rice cv. 'Seolemi' and soybean cv. 'Chamol'. As a result, under the natural soils condition, rice grain and straw were highly produced in composted S-B-S-B soils (p < 0.05) and lowly in R-R soils (p < 0.05). While soybean grain and stem were higher in R-R soils (p < 0.05) than other soils which not significantly different each other. In case of autoclaved soils, the yield potentials of rice and soybean were high together in either composted R-B-R-B/W or S-B-S-B soils compared to R-R and uncomposted S-B-S-B soils (p < 0.05). In especial, these yield potentials under the natural soils condition were commonly influenced by soil porosity showing negative correlation for rice (p < 0.01); positive for soybean (p < 0.05). And the porosity possibly reversed even the symbiotic contribution of indigenous Bradyrhizobium japonicum for soybean. Under autoclaved soils condition the potentials of rice and soybean showed negative correlations with soil C:N ratio (p < 0.05) similarly to the case of rice in the natural soils.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.54 no.3
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• pp.332-338
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• 2009

Rapid extension of genomic database leads to the remarkable advance of functional genomics. This study proposes a novel methodology of functional analysis using 5-methyltrytophan (5 MT) mutant together with their 2-DE analysis and public microarray database. A total of 24 proteins was changed in 5 MT mutant and four remarkably different expressed proteins were identified. Among them, three spots were converted to Affymetrix probe. A total of 155 microarray samples from Gene Expression Omnibus (GEO) in NCBI was retrieved and followed by constructing gene co-expression networks over a broad range of biological issues through Self-Organising Tree Algorithm. Three co-expressing gene clusters were retrieved and each functional categorization with differential expression pattern was exhibited from 5 MT resistance mutant rice. It was indicated new co-expression networks in the mutant. This study suggests that on investigating possibility which correspond 2-DE to microarray database with their full potential.

• Genomics & Informatics
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• v.17 no.2
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• pp.17.1-17.3
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• 2019

Text mining has become an important research method in biology, with its original purpose to extract biological entities, such as genes, proteins and phenotypic traits, to extend knowledge from scientific papers. However, few thorough studies on text mining and application development, for plant molecular biology data, have been performed, especially for rice, resulting in a lack of datasets available to solve named-entity recognition tasks for this species. Since there are rare benchmarks available for rice, we faced various difficulties in exploiting advanced machine learning methods for accurate analysis of the rice literature. To evaluate several approaches to automatically extract information from gene/protein entities, we built a new dataset for rice as a benchmark. This dataset is composed of a set of titles and abstracts, extracted from scientific papers focusing on the rice species, and is downloaded from PubMed. During the 5th Biomedical Linked Annotation Hackathon, a portion of the dataset was uploaded to PubAnnotation for sharing. Our ultimate goal is to offer a shared task of rice gene/protein name recognition through the BioNLP Open Shared Tasks framework using the dataset, to facilitate an open comparison and evaluation of different approaches to the task.

• Journal of Life Science
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• v.25 no.9
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• pp.1014-1020
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• 2015

This study suggests that fermented rice bran extract contains natural antioxidants. The contents of bioactive materials (e.g., polyphenolic compounds and flavonoids), antioxidative properties (DPPH (α,α'- diphenyl-β-picrylhydrazyl) free radical scavenging activity, Fe reducing, Cu reducing power, peroxidation of linoleic acid and rat hepatocyte microsome) were tested by in vitro experimental models using fermented rice bran (FRB) extract. The concentrations of phenolic compound and flavonoid were 19.92 mg/g and 11.56 mg/g, respectively. In oxidation in vitro models using DPPH free radical scavenging activity, (free radical scavenging activity 69.8%) Fe reducing power and Cu reducing power (effect of dose-dependent manner), Fe²⁺/ascorbate induced linolenic acid peroxidation by ferric thiocyanate and thiobarbituric acid (TBA) methods (inhibition activity 81%), and autooxidation of rat hepatic microsomes membrane (lipid peroxidation inhibition activity 38%), antioxidative activities were stronger in FRB extract than FRS (Fermented Rice and Soybean, positive control) extract and, these effects were dose-dependent manner. From these results, FRB extract was shown to have the most potent antioxidative properties and contain the highest amounts of antioxidative compounds such as phenolic compounds and flavonoids. Overall, these results may provide the basic data to understand the antioxidative properties of fermented rice bran for development of functional foods.

• Korean Journal of Environmental Agriculture
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• v.29 no.2
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• pp.93-101
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• 2010

For the study of possibility of practical use as an organic farm materials of the mixtures with lignite and amino acid solution, this experiment was carried out to investigate the effects of the mixtures on the growth and the yield of rice plant, chinese cabbage, and red pepper, and the effects of the mixtures on chemical properties of soil. Also, when the mixtures of the lignite plus amino acid solution and the chemical fertilizer were applied to these three crop cultivation area, authors want to know how can the loss in quantity of chemical fertilizer affects the growth and the yield of these crops. As the results, growth of rice plant applied with the mixtures of lignite and amino acid solution was better than that applied with the recommended rate of chemical fertilizer. Especially, the growth of rice plant appeared to be good at the treatment of 150 kg/ha of the mixed lignite with amino acid solution and at that of its mixtures and standard fertilization. Growth of chinese cabbage and red pepper was good at the application of 600 kg/ha of the mixed lignite with amino acid solution and at that of its mixtures and standard fertilization. Yield of rice and chinese cabbage was good at the treatment of 150 kg/ha of the mixed lignite with amino acid solution and at that of its mixtures and standard fertilization, and yield of red pepper was good at the application of 600 kg/ha of the mixed lignite with amino acid solution and at that of its mixtures and standard fertilization. The organic matter content increased and while the exchangeable cation decreased when the lignite mixed with amino acid solution and the loss in quantity of chemical fertilizer applied at paddy field. Incase of these treatments, pH and available phosphorus increase at upland field, but did not change at paddy field.

• Molecules and Cells
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• v.25 no.2
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• pp.272-278
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• 2008

The carbon-ion beam (CIB) generated by the heavy-ion medical accelerator in Chiba (HIMAC) was targeted to 7-day-old rice. Physiological parameters such as growth, and gene expression profiles were examined immediately after CIB irradiation. Dose-dependent growth suppression was seen three days post-irradiation (PI), and all the irradiated plants died by 15 days PI. Microarray (Agilent rice 22K) analysis of the plants immediately after irradiation (iai) revealed effects on gene expression at 270 Gy; 353 genes were up-regulated and 87 down-regulated. Exactly the same set of genes was affected at 90 Gy. Among the highly induced genes were genes involved in information storage and processing, cellular processes and signaling, and metabolism. RT-PCR analysis confirmed the microarray data.