A Genome-wide Approach for Functional Analysis Using Rice Mutant |
Yim, Won-Cheol
(Department of Plant Biotechnology, Dongguk University)
Kim, Dong-Sub (Radiation Research Center for Bio-technology, Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute) Moon, Jun-Cheol (Institute of Life Science & Natural Resources, Korea University) Jang, Cheol-Seong (Plant Genomics Lab., Division of Bio-resources Technology, Kangwon National University) Lee, Byung-Moo (Department of Plant Biotechnology, Dongguk University) |
1 | Herrero, J., A. Valencia, and J. Dopazo. 2001. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17 : 126-136 DOI ScienceOn |
2 | Phillips, R. L., S. M. Kaeppler, and P. Olhoft. 1994. Genetic Instability of Plant Tissue Cultures: Breakdown of Normal Controls. Proc. Natl Acad. Sci 91 : 5222-5226 DOI ScienceOn |
3 | Project, I. R. G. S. 2005. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol 3 : 20 DOI PUBMED ScienceOn |
4 | Zimmermann, P., L. Hennig, and W. Gruissem. 2005. Geneexpression analysis and network discovery using Genevestigator. Trends Plant Sci. 10 : 407-409 DOI ScienceOn |
5 | Zeng, F., X. Zhang, L. Cheng, L. Hu, L. Zhu, J. Cao, and X. Guo. 2007. A draft gene regulatory network for cellular totipotency reprogramming during plant somatic embryogenesis. Genomics 90 : 620-628 DOI ScienceOn |
6 | Gu, Z., D. Nicolae, H. H. Lu, and W. H. Li. 2002. Rapid divergence in expression between duplicate genes inferred from microarray data. Trends in Genetics 18 : 609-613 DOI ScienceOn |
7 | Radwanski, E. R., J. Zhao, and R. L. Last. 1995. Arabidopsis thaliana tryptophan synthase alpha: Gene cloning, expression, and subunit interaction. Mol. Genet. Genome. 248 : 657-667 DOI ScienceOn |
8 | Schaeffer, G. W., F. T. Sharpe, and P. B. Cregan. 1984. Variation for improved protein and yield from rice anther culture. Theor. App. Genet. 67 : 383-389 |
9 | O'Farrell, P. H. 1975. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 250 : 4007-4021 PUBMED |
10 | Blanc, G. and K. H. Wolfe. 2004. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16 : 1679-1691 DOI ScienceOn |
11 | Kruger, N. J. 2002. The Bradford Method for Protein Quantitation. The Protein Protocols Handbook. Humana Press Inc. 15-20 |
12 | W. C. Yim. and Jang, C. S. 2007. Discovery of gene regulatory networks via in silico analysis and their application in abiotic stress responses. Korean J. Breed 37(4) : 464-472 |
13 | Gale, M. D. and K. M. Devos. 1998. Comparative genetics in the grasses. Proc. Natl Acad. Sci 95 : 1971-1974 DOI ScienceOn |
14 | Kamo, M., T. Kawakami, N. Miyatake, and A. Tsugita. 1995. Separation and characterization of Arabidopsis thaliana proteins by two-dimensional gel electrophoresis. Electrophoresis 16 : 423-430 DOI ScienceOn |
15 | Varshney, R. K., A. Graner, and M. E. Sorrells. 2005. Genomicsassisted breeding for crop improvement. Trends Plant Sci. 10 : 621-630 DOI ScienceOn |
16 | Sasaki, T. 1998. The rice genome project in Japan. Proc. Natl Acad. Sci 95(5) : 2027-2028 DOI ScienceOn |
17 | de Hoon, M. J., S. Imoto, J. Nolan, and S. Miyano. 2004. Open source clustering software. Bioinformatics 20 : 1453-1454 DOI ScienceOn |
18 | Haughn, G. W., L. Davin, M. Giblin, and E. W. Underhill. 1991. Biochemical Genetics of Plant Secondary Metabolites in Arabidopsis thaliana: The Glucosinolates. Plant Physiology 97 : 217-226 DOI ScienceOn |
19 | Gromova, I. and J. E. Celis. 2004. Protein detection in gels by silver staining: A procedure compatible with massspectrometry. Cell Biology. A Laboratory Handbook |
20 | Kim, D. S., I. S. Lee, C. S. Jang, D. Y. Hyun, Y. W. Seo, and Y. I. Lee. 2004. Selection of 5-methyltryptophan resistant rice mutants from irradiated calli derived from embryos. Euphytica 135 : 9-19 DOI ScienceOn |
21 | Hobo, T., Y. Kowyama, and T. Hattori. 1999. A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acidinduced transcription. Proc. Natl Acad. Sci 96(26) : 15348-15353 DOI ScienceOn |
22 | Devos, K. M. and M. D. Gale. 2000. Genome Relationships: The Grass Model in Current Research. The Plant Cell 12: 637-646 DOI ScienceOn |
23 | Larkin, P. J. and W. R. Scowcroft. 1981. Somaclonal variation-a novel source of variability from cell cultures for plant improvement. Theor. App. Genet. 60 : 197-214 DOI ScienceOn |