• Title/Summary/Keyword: bayesian algorithm

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Band Selection Using Forward Feature Selection Algorithm for Citrus Huanglongbing Disease Detection

  • Katti, Anurag R.;Lee, W.S.;Ehsani, R.;Yang, C.
    • Journal of Biosystems Engineering
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    • v.40 no.4
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    • pp.417-427
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    • 2015
  • Purpose: This study investigated different band selection methods to classify spectrally similar data - obtained from aerial images of healthy citrus canopies and citrus greening disease (Huanglongbing or HLB) infected canopies - using small differences without unmixing endmember components and therefore without the need for an endmember library. However, large number of hyperspectral bands has high redundancy which had to be reduced through band selection. The objective, therefore, was to first select the best set of bands and then detect citrus Huanglongbing infected canopies using these bands in aerial hyperspectral images. Methods: The forward feature selection algorithm (FFSA) was chosen for band selection. The selected bands were used for identifying HLB infected pixels using various classifiers such as K nearest neighbor (KNN), support vector machine (SVM), naïve Bayesian classifier (NBC), and generalized local discriminant bases (LDB). All bands were also utilized to compare results. Results: It was determined that a few well-chosen bands yielded much better results than when all bands were chosen, and brought the classification results on par with standard hyperspectral classification techniques such as spectral angle mapper (SAM) and mixture tuned matched filtering (MTMF). Median detection accuracies ranged from 66-80%, which showed great potential toward rapid detection of the disease. Conclusions: Among the methods investigated, a support vector machine classifier combined with the forward feature selection algorithm yielded the best results.

An Improved Map Construction for Mobile Robot Using Fuzzy Logic and Genetic Algorithm (퍼지 논리와 진화알고리즘을 이용한 자율이동로봇의 향상된 지도 작성)

  • Jin Kwang-Sik;Ahn Ho-Gyun;Yoon Tae-Sung
    • Journal of the Korean Institute of Intelligent Systems
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    • v.15 no.3
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    • pp.330-336
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    • 2005
  • Existing Bayesian update method using ultrasonic sensors only for mobile robot map building has a problem of the quality of map being degraded in the wall with irregularity, which is caused by the wide beam distribution. For improving this problem, an infrared sensors aided map building method is presented in this paper. Information of obstacle at each region in ultrasonic sensor beam is acquired using the infrared sensors and the information is used to get the confidence of ultrasonic sensor information via fuzzy inference system and genetic algorithm. Combining the resulting confidence with the result of Bayesian update method, an improve map is constructed. The proposed method showed good results in the simulations and experiments.

Genotype-Calling System for Somatic Mutation Discovery in Cancer Genome Sequence (암 유전자 배열에서 체세포 돌연변이 발견을 위한 유전자형 조사 시스템)

  • Park, Su-Young;Jung, Chai-Yeoung
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.17 no.12
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    • pp.3009-3015
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    • 2013
  • Next-generation sequencing (NGS) has enabled whole genome and transcriptome single nucleotide variant (SNV) discovery in cancer and method of the most fundamental being determining an individual's genotype from multiple aligned short read sequences at a position. Bayesian algorithm estimate parameter using posterior genotype probabilities and other method, EM algorithm, estimate parameter using maximum likelihood estimate method in observed data. Here, we propose a novel genotype-calling system and compare and analyze the effect of sample size(S = 50, 100 and 500) on posterior estimate of sequencing error rate, somatic mutation status and genotype probability. The result is that estimate applying Bayesian algorithm even for 50 of small sample size approached real parameter than estimate applying EM algorithm in small sample more accurately.

Multiple Change-Point Estimation of Air Pollution Mean Vectors

  • Kim, Jae-Hee;Cheon, Sooy-Oung
    • The Korean Journal of Applied Statistics
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    • v.22 no.4
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    • pp.687-695
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    • 2009
  • The Bayesian multiple change-point estimation has been applied to the daily means of ozone and PM10 data in Seoul for the period 1999. We focus on the detection of multiple change-points in the ozone and PM10 bivariate vectors by evaluating the posterior probabilities and Bayesian information criterion(BIC) using the stochastic approximation Monte Carlo(SAMC) algorithm. The result gives 5 change-points of mean vectors of ozone and PM10, which are related with the seasonal characteristics.

Uncertainty decomposition in climate-change impact assessments: a Bayesian perspective

  • Ohn, Ilsang;Seo, Seung Beom;Kim, Seonghyeon;Kim, Young-Oh;Kim, Yongdai
    • Communications for Statistical Applications and Methods
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    • v.27 no.1
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    • pp.109-128
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    • 2020
  • A climate-impact projection usually consists of several stages, and the uncertainty of the projection is known to be quite large. It is necessary to assess how much each stage contributed to the uncertainty. We call an uncertainty quantification method in which relative contribution of each stage can be evaluated as uncertainty decomposition. We propose a new Bayesian model for uncertainty decomposition in climate change impact assessments. The proposed Bayesian model can incorporate uncertainty of natural variability and utilize data in control period. We provide a simple and efficient Gibbs sampling algorithm using the auxiliary variable technique. We compare the proposed method with other existing uncertainty decomposition methods by analyzing streamflow data for Yongdam Dam basin located at Geum River in South Korea.

DEFAULT BAYESIAN INFERENCE OF REGRESSION MODELS WITH ARMA ERRORS UNDER EXACT FULL LIKELIHOODS

  • Son, Young-Sook
    • Journal of the Korean Statistical Society
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    • v.33 no.2
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    • pp.169-189
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    • 2004
  • Under the assumption of default priors, such as noninformative priors, Bayesian model determination and parameter estimation of regression models with stationary and invertible ARMA errors are developed under exact full likelihoods. The default Bayes factors, the fractional Bayes factor (FBF) of O'Hagan (1995) and the arithmetic intrinsic Bayes factors (AIBF) of Berger and Pericchi (1996a), are used as tools for the selection of the Bayesian model. Bayesian estimates are obtained by running the Metropolis-Hastings subchain in the Gibbs sampler. Finally, the results of numerical studies, designed to check the performance of the theoretical results discussed here, are presented.

Recommendation Method using Naive Bayesian algorithm in Hybrid User and Item based Collaborative Filtering (사용자와 아이템의 혼합 협력적 필터링에서 Naive Bayesian 알고리즘을 이용한 추천 방법)

  • 김용집;정경용;한승진;고종철;이정현
    • Proceedings of the Korean Information Science Society Conference
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    • 2003.10a
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    • pp.184-186
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    • 2003
  • 기존의 사용자 기반 협력적 필터링이 가지는 단점으로 지적되었던 희박성과 확장성의 문제를 아이템 기반 협력적 필터링 기법을 통하여 개선하려는 연구가 진행되어 왔다. 실제로 많은 성과가 있었지만. 여전히 명시적 데이터를 기반으로 하기 때문에 희박성이 존재하며, 아이템의 속성이 반영되지 않는 문제점이 있다. 본 논문에서는 기존의 아이템 기반 협력적 필터링의 문제점을 보완하기 위하여 사용자와 아이템의 혼합 협력적 필터링에서 Naive Bayesian 알고리즘을 이용한 추천 방법을 제안한다. 제안된 방법에서는 각 사용자와 아이템에 대한 유사도 검색 테이블을 생성한 후, Naive Bayesian 알고리즘으로 아이템을 예측 및 추천함으로써, 성능을 개선하였다. 성능 평가를 위해 기존의 아이템 기반 협력적 필터링 기술과 비교 평가하였다.

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Fast Conditional Independence-based Bayesian Classifier

  • Junior, Estevam R. Hruschka;Galvao, Sebastian D. C. de O.
    • Journal of Computing Science and Engineering
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    • v.1 no.2
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    • pp.162-176
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    • 2007
  • Machine Learning (ML) has become very popular within Data Mining (KDD) and Artificial Intelligence (AI) research and their applications. In the ML and KDD contexts, two main approaches can be used for inducing a Bayesian Network (BN) from data, namely, Conditional Independence (CI) and the Heuristic Search (HS). When a BN is induced for classification purposes (Bayesian Classifier - BC), it is possible to impose some specific constraints aiming at increasing the computational efficiency. In this paper a new CI based approach to induce BCs from data is proposed and two algorithms are presented. Such approach is based on the Markov Blanket concept in order to impose some constraints and optimize the traditional PC learning algorithm. Experiments performed with the ALARM, as well as other six UCI and three artificial domains revealed that the proposed approach tends to execute fewer comparison tests than the traditional PC. The experiments also show that the proposed algorithms produce competitive classification rates when compared with both, PC and Naive Bayes.

Bayesian Estimation for Inflection S-shaped Software Reliability Growth Model (변곡 S-형 소프트웨어 신뢰도성장모형의 베이지안 모수추정)

  • Kim, Hee-Soo;Lee, Chong-Hyung;Park, Dong-Ho
    • Journal of Korean Society for Quality Management
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    • v.37 no.4
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    • pp.16-22
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    • 2009
  • The inflection S-shaped software reliability growth model (SRGM) proposed by Ohba(1984) is one of the most commonly used models and has been discussed by many authors. The main purpose of this paper is to estimate the parameters of Ohba's SRGM within the Bayesian framework by applying the Markov chain Monte Carlo techniques. While the maximum likelihood estimates for these parameters are well known, the Bayesian method for the inflection S-shaped SRGM have not been discussed in the literature. The proposed methods can be quite flexible depending on the choice of prior distributions for the parameters of interests. We also compare the Bayesian methods with the maximum likelihood method numerically based on the real data.

Bayesian updated correlation length of spatial concrete properties using limited data

  • Criel, Pieterjan;Caspeele, Robby;Taerwe, Luc
    • Computers and Concrete
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    • v.13 no.5
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    • pp.659-677
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    • 2014
  • A Bayesian response surface updating procedure is applied in order to update the parameters of the covariance function of a random field for concrete properties based on a limited number of available measurements. Formulas as well as a numerical algorithm are presented in order to update the parameters of response surfaces using Markov Chain Monte Carlo simulations. The parameters of the covariance function are often based on some kind of expert judgment due the lack of sufficient measurement data. However, a Bayesian updating technique enables to estimate the parameters of the covariance function more rigorously and with less ambiguity. Prior information can be incorporated in the form of vague or informative priors. The proposed estimation procedure is evaluated through numerical simulations and compared to the commonly used least square method.