• Title/Summary/Keyword: bayesian MCMC

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Multinomial Group Testing with Small-Sized Pools and Application to California HIV Data: Bayesian and Bootstrap Approaches

  • 김종민;허태영;안형진
    • 한국조사연구학회:학술대회논문집
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    • 한국조사연구학회 2006년도 춘계학술대회 발표논문집
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    • pp.131-159
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    • 2006
  • This paper consider multinomial group testing which is concerned with classification each of N given units into one of k disjoint categories. In this paper, we propose exact Bayesian, approximate Bayesian, bootstrap methods for estimating individual category proportions using the multinomial group testing model proposed by Bar-Lev et al (2005). By the comparison of Mcan Squre Error (MSE), it is shown that the exact Bayesian method has a bettor efficiency and consistency than maximum likelihood method. We suggest an approximate Bayesian approach using Markov Chain Monte Carlo (MCMC) for posterior computation. We derive exact credible intervals based on the exact Bayesian estimators and present confidence intervals using the bootstrap and MCMC. These intervals arc shown to often have better coverage properties and similar mean lengths to maximum likelihood method already available. Furthermore the proposed models are illustrated using data from a HIV blooding test study throughout California, 2000.

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Effects of ILFs on DRAM algorithm in SURR model uncertainty evaluation caused by interpolated rainfall using different methods

  • Nguyen, Thi Duyen;Nguyen, Duc Hai;Bae, Deg-Hyo
    • 한국수자원학회:학술대회논문집
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    • 한국수자원학회 2022년도 학술발표회
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    • pp.137-137
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    • 2022
  • Evaluating interpolated rainfall uncertainty of hydrological models caused by different interpolation methods for basins where can not fully collect rainfall data are necessary. In this study, the adaptive MCMC method under effects of ILFs was used to analyze the interpolated rainfall uncertainty of the SURR model for Gunnam basin, Korea. Three events were used to calibrate and one event was used to validate the posterior distributions of unknown parameters. In this work, the performance of four ILFs on uncertainty of interpolated rainfall was assessed. The indicators of p_factor (percentage of observed streamflow included in the uncertainty interval) and r_factor (the average width of the uncertainty interval) were used to evaluate the uncertainty of the simulated streamflow. The results showed that the uncertainty bounds illustrated the slight differences from various ILFs. The study confirmed the importance of the likelihood function selection in the application the adaptive Bayesian MCMC method to the uncertainty assessment of the SURR model caused by interpolated rainfall.

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MCMC 방법을 이용한 ARMA-GARCH 모형에서의 예측 방법 연구 (A Study for Forecasting Methods of ARMA-GARCH Model Using MCMC Approach)

  • 채화연;최보승;김기환;박유성
    • 응용통계연구
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    • 제24권2호
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    • pp.293-305
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    • 2011
  • 변동성은 최근 경제가 급변하면서 옵션의 가격 결정과 자산의 위험관리에서 그 중요성이 더 커지고 있다. 이러한 변동성은 분산을 지칭하며, 위험(risk)을 측정하는 수단이 되므로 정확한 추정과 예측이 매우 필요하다. 본 논문에서는 변동성에 대한 모형으로 오차항이 ARMA(p, q)-GARCH(r, s) 모형을 따르는 회귀모형을 설정하고, 이 모형의 모수에 대해 베이지안 추정법을 제시하였다. 또한 평균과 분산(변동성)에 대한 예측값을 구하고 이에 대한 베이지안 구간추정을 하였다. 이를 500개의 모의실험 자료를 통해 최우추정법과 비교하였다. 뿐만 아니라, 베이지안 방법을 이용하여 Frequentist의 관점에서는 구하기 어려운 GARCH 모형에서의 일종의 단위근이 존재할 확률을 구하였다.

TANK 모형의 매개변수 추정을 위한 베이지안 접근법의 적용: MCMC 및 GLUE 방법의 비교 (Application of Bayesian Approach to Parameter Estimation of TANK Model: Comparison of MCMC and GLUE Methods)

  • 김령은;원정은;최정현;이옥정;김상단
    • 한국물환경학회지
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    • 제36권4호
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    • pp.300-313
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    • 2020
  • The Bayesian approach can be used to estimate hydrologic model parameters from the prior expert knowledge about the parameter values and the observed data. The purpose of this study was to compare the performance of the two Bayesian methods, the Metropolis-Hastings (MH) algorithm and the Generalized Likelihood Uncertainty Estimation (GLUE) method. These two methods were applied to the TANK model, a hydrological model comprising 13 parameters, to examine the uncertainty of the parameters of the model. The TANK model comprises a combination of multiple reservoir-type virtual vessels with orifice-type outlets and implements a common major hydrological process using the runoff calculations that convert the rainfall to the flow. As a result of the application to the Nam River A watershed, the two Bayesian methods yielded similar flow simulation results even though the parameter estimates obtained by the two methods were of somewhat different values. Both methods ensure the model's prediction accuracy even when the observed flow data available for parameter estimation is limited. However, the prediction accuracy of the model using the MH algorithm yielded slightly better results than that of the GLUE method. The flow duration curve calculated using the limited observed flow data showed that the marginal reliability is secured from the perspective of practical application.

극치강우사상을 포함한 강우빈도분석의 불확실성 분석 (Analysis of Uncertainty of Rainfall Frequency Analysis Including Extreme Rainfall Events)

  • 김상욱;이길성;박영진
    • 한국수자원학회논문집
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    • 제43권4호
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    • pp.337-351
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    • 2010
  • 극치사상을 예측하기 위한 기존의 빈도분석 결과의 이용에 대한 많은 문제점들이 부각되고 있다. 특히, 통계적 모형을 이용하기 위해서 흔히 사용되는 점근적 모형 (asymptotic model)의 합리적인 검토 없는 외삽 (extrapolation)은 산정된 확률 값을 과대 또는 과소평가하는 문제를 일으켜, 예측결과에 대한 불확실성을 과다하게 산정함으로써 불확실성에 대한 신뢰도를 감소시키는 문제가 있다. 그러므로 본 연구에서는 국내에서 극치강우사상을 포함한 강우자료의 빈도분석에 대한 연구사례를 제공하고 점근적 모형을 사용하는 경우 발생되는 불확실성을 감소시키기 위한 방법론을 제시하였다. 이를 위하여 본 연구에서는 극치강우사상의 빈도분석을 수행하는 데 있어서 최근 들어 여러 분야에서 다양하게 적용되고 있는 Bayesian MCMC (Markov Chain Monte Carlo) 방법을 사용하였으며, 그 결과를 최우추정방법 (Maximum likelihood estimation method)과 비교하였다. 특히 강우사상의 점 빈도분석에 흔히 이용되는 확률밀도함수로 GEV (Generalized Extreme Value) 분포와 Gumbel 분포를 모두 고려하여 두 분포의 결과를 비교하였으며, 이 과정에서 각각의 산정결과 및 불확실성은 근사식을 이용한 최우추정방법과 Bayesian 방법을 이용하여 각각 비교 및 분석되었다.

Uncertainty reduction of seismic fragility of intake tower using Bayesian Inference and Markov Chain Monte Carlo simulation

  • Alam, Jahangir;Kim, Dookie;Choi, Byounghan
    • Structural Engineering and Mechanics
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    • 제63권1호
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    • pp.47-53
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    • 2017
  • The fundamental goal of this study is to minimize the uncertainty of the median fragility curve and to assess the structural vulnerability under earthquake excitation. Bayesian Inference with Markov Chain Monte Carlo (MCMC) simulation has been presented for efficient collapse response assessment of the independent intake water tower. The intake tower is significantly used as a diversion type of the hydropower station for maintaining power plant, reservoir and spillway tunnel. Therefore, the seismic fragility assessment of the intake tower is a pivotal component for estimating total system risk of the reservoir. In this investigation, an asymmetrical independent slender reinforced concrete structure is considered. The Bayesian Inference method provides the flexibility to integrate the prior information of collapse response data with the numerical analysis results. The preliminary information of risk data can be obtained from various sources like experiments, existing studies, and simplified linear dynamic analysis or nonlinear static analysis. The conventional lognormal model is used for plotting the fragility curve using the data from time history simulation and nonlinear static pushover analysis respectively. The Bayesian Inference approach is applied for integrating the data from both analyses with the help of MCMC simulation. The method achieves meaningful improvement of uncertainty associated with the fragility curve, and provides significant statistical and computational efficiency.

Event date model: a robust Bayesian tool for chronology building

  • Philippe, Lanos;Anne, Philippe
    • Communications for Statistical Applications and Methods
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    • 제25권2호
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    • pp.131-157
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    • 2018
  • We propose a robust event date model to estimate the date of a target event by a combination of individual dates obtained from archaeological artifacts assumed to be contemporaneous. These dates are affected by errors of different types: laboratory and calibration curve errors, irreducible errors related to contaminations, and taphonomic disturbances, hence the possible presence of outliers. Modeling based on a hierarchical Bayesian statistical approach provides a simple way to automatically penalize outlying data without having to remove them from the dataset. Prior information on individual irreducible errors is introduced using a uniform shrinkage density with minimal assumptions about Bayesian parameters. We show that the event date model is more robust than models implemented in BCal or OxCal, although it generally yields less precise credibility intervals. The model is extended in the case of stratigraphic sequences that involve several events with temporal order constraints (relative dating), or with duration, hiatus constraints. Calculations are based on Markov chain Monte Carlo (MCMC) numerical techniques and can be performed using ChronoModel software which is freeware, open source and cross-platform. Features of the software are presented in Vibet et al. (ChronoModel v1.5 user's manual, 2016). We finally compare our prior on event dates implemented in the ChronoModel with the prior in BCal and OxCal which involves supplementary parameters defined as boundaries to phases or sequences.

The inference and estimation for latent discrete outcomes with a small sample

  • Choi, Hyung;Chung, Hwan
    • Communications for Statistical Applications and Methods
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    • 제23권2호
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    • pp.131-146
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    • 2016
  • In research on behavioral studies, significant attention has been paid to the stage-sequential process for longitudinal data. Latent class profile analysis (LCPA) is an useful method to study sequential patterns of the behavioral development by the two-step identification process: identifying a small number of latent classes at each measurement occasion and two or more homogeneous subgroups in which individuals exhibit a similar sequence of latent class membership over time. Maximum likelihood (ML) estimates for LCPA are easily obtained by expectation-maximization (EM) algorithm, and Bayesian inference can be implemented via Markov chain Monte Carlo (MCMC). However, unusual properties in the likelihood of LCPA can cause difficulties in ML and Bayesian inference as well as estimation in small samples. This article describes and addresses erratic problems that involve conventional ML and Bayesian estimates for LCPA with small samples. We argue that these problems can be alleviated with a small amount of prior input. This study evaluates the performance of likelihood and MCMC-based estimates with the proposed prior in drawing inference over repeated sampling. Our simulation shows that estimates from the proposed methods perform better than those from the conventional ML and Bayesian method.

Optimal Bayesian MCMC based fire brigade non-suppression probability model considering uncertainty of parameters

  • Kim, Sunghyun;Lee, Sungsu
    • Nuclear Engineering and Technology
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    • 제54권8호
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    • pp.2941-2959
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    • 2022
  • The fire brigade non-suppression probability model is a major factor that should be considered in evaluating fire-induced risk through fire probabilistic risk assessment (PRA), and also uncertainty is a critical consideration in support of risk-informed performance-based (RIPB) fire protection decision-making. This study developed an optimal integrated probabilistic fire brigade non-suppression model considering uncertainty of parameters based on the Bayesian Markov Chain Monte Carlo (MCMC) approach on electrical fire which is one of the most risk significant contributors. The result shows that the log-normal probability model with a location parameter (µ) of 2.063 and a scale parameter (σ) of 1.879 is best fitting to the actual fire experience data. It gives optimal model adequacy performance with Bayesian information criterion (BIC) of -1601.766, residual sum of squares (RSS) of 2.51E-04, and mean squared error (MSE) of 2.08E-06. This optimal log-normal model shows the better performance of the model adequacy than the exponential probability model suggested in the current fire PRA methodology, with a decrease of 17.3% in BIC, 85.3% in RSS, and 85.3% in MSE. The outcomes of this study are expected to contribute to the improvement and securement of fire PRA realism in the support of decision-making for RIPB fire protection programs.

Bayesian Conway-Maxwell-Poisson (CMP) regression for longitudinal count data

  • Morshed Alam ;Yeongjin Gwon ;Jane Meza
    • Communications for Statistical Applications and Methods
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    • 제30권3호
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    • pp.291-309
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    • 2023
  • Longitudinal count data has been widely collected in biomedical research, public health, and clinical trials. These repeated measurements over time on the same subjects need to account for an appropriate dependency. The Poisson regression model is the first choice to model the expected count of interest, however, this may not be an appropriate when data exhibit over-dispersion or under-dispersion. Recently, Conway-Maxwell-Poisson (CMP) distribution is popularly used as the distribution offers a flexibility to capture a wide range of dispersion in the data. In this article, we propose a Bayesian CMP regression model to accommodate over and under-dispersion in modeling longitudinal count data. Specifically, we develop a regression model with random intercept and slope to capture subject heterogeneity and estimate covariate effects to be different across subjects. We implement a Bayesian computation via Hamiltonian MCMC (HMCMC) algorithm for posterior sampling. We then compute Bayesian model assessment measures for model comparison. Simulation studies are conducted to assess the accuracy and effectiveness of our methodology. The usefulness of the proposed methodology is demonstrated by a well-known example of epilepsy data.