• Journal of The Korean Society of Agricultural Engineers
• /
• v.62 no.4
• /
• pp.75-86
• /
• 2020

The purpose of this study is to develop a technology for estimating rice growth and damage effect according to bacterial leaf blight using UAV multi-spectral imagery. For this purpose, we analyzed the change of aerial images, rice growth factors (plant height, dry weight, LAI) and disease effects according to disease occurrence by using UAV images for 3 rice varieties (Milyang23, Sindongjin-byeo, Saenuri-byeo) from 2017 to 2018. The correlation between vegetation index and rice growth factor during vegetative growth period showed a high value of 0.9 or higher each year. As a result of applying the growth estimation model built in 2017 to 2018, the plant height of Milyang23 showed good error withing 10%. However, it is considered that studies to improve the accuracy of other items are needed. Fixed wing unmanned aerial photographs were also possible to estimate the damage area after 2 to 4 weeks from inoculation. Although sensing data in the multi-spectral (Blue, Green, Red, NIR) band have limitations in early diagnosis of rice disease, for rice varieties such as Milyang23 and Sindongjin-byeo, it was possible to construct the equation of infected leaf area ratio and rice yield estimation using UAV imagery in early and mid-September with high correlation coefficient of 0.8 to 0.9. The results of this study are expected to be useful for farming and policy support related to estimating rice growth, rice plant disease and yield change based on UAV images.

• The Plant Pathology Journal
• /
• v.24 no.3
• /
• pp.337-351
• /
• 2008

Host-pathogen interaction in rice bacterial blight pathosystem was analyzed for a better understanding of their relationship and recognition of stable pathogenicity among the populations of Xanthomonas oryzae pv. oryzae. A total number of 52 bacterial strains isolated from diseased leaf samples collected from 12 rice growing states and one Union Territory of India, were inoculated on 16 rice varieties, each possessing known genes for resistance. Analysis of variance revealed that the host genotypes(G) accounted for largest(78.4%) proportion of the total sum of squares(SS), followed by 16.5% due to the pathogen isolates(I) and 5.1% due to the $I{\times}G$ interactions. Application of the Additive Main effects and Multiplicative Interaction(AMMI) model revealed that the first two interaction principal component axes(IPCA) accounted for 66.8% and 21.5% of the interaction SS, respectively. The biplot generated using the isolate and genotypic scores of the first two IPCAs revealed groups of host genotypes and pathogen isolates falling into four sectors. A group of five isolates with high virulence, high absolute IPCA-1 scores, moderate IPCA-2 scores, low AMMI stability index '$D_i$' values and minimal deviations from additive main effects displayed in AMMI biplot as well as response plot, were identified as possessing stable pathogenicity across 16 host genotypes. The largest group of 27 isolates with low virulence, small IPCA-1 as well as IPCA-2 scores, low $D_i$ values and minimal deviations from additive main effect predictions, possessed stable pathogenicity for low virulence. The AMMI analysis and biplot display facilitated in a better understanding of the host-pathogen interaction, adaptability of pathogen isolates to specific host genotypes, identification of isolates showing stable pathogenicity and most discriminating host genotypes, which could be useful in location specific breeding programs aiming at deployment of resistant host genotypes in bacterial blight disease control strategies.

• Journal of Plant Biotechnology
• /
• v.44 no.2
• /
• pp.149-155
• /
• 2017

Bacterial blight in rice caused by Xanthomonas oryzae pv. oryzae (Xoo) greatly reduces the growth and productivity of this important food crop. Therefore, we sought to increase the resistance of rice to bacterial blight by using a NAC (NAM, ATAF, and CUC) transcription factor, one of the plant-specific transcription factors that is known to be involved in biotic/abiotic stress resistance. By isolating the OsNAC58 gene from rice and analyzing its biological functions related to Xoo resistance, phylogenetic analysis showed that OsNAC58 belongs to group III. To investigate the biological relationship between bacterial leaf blight (BLB) and OsNAC58 in rice, we constructed a vector for overexpression in rice and generated transgenic rice. The expression analysis resulting from use of RT-PCR showed that OsNAC58-overexpressed transgenic rice exhibited higher levels of OsNAC58 expression than wild types. Further, subcellular localization analysis using rice protoplasts showed that the 35S/OsNAC58-SmGFP fusion protein was localized in the nuclei. Thirteen OsNAC58-overexpressed transgenic rice lines, with high expression levels of OsNAC58, showed more resistant to Xoo than did the wild types. Together, these results suggest that the OsNAC58 gene of rice regulates the rice disease resistance mechanism in the nucleus upon invasion of the rice bacterial blight pathogen Xoo.

• Proceedings of the Plant Resources Society of Korea Conference
• /
• 2019.04a
• /
• pp.62-62
• /
• 2019

Bacterial leaf blight(BLB), caused by X. oryzae pv. oryzae(Xoo), is one of the most destructive diseases of rice due to its high epidemic potential. Understanding BLB resistance at a genetic level is important to further improve the rice breeding that provides one of the best approaches to control BLB disease. In the present investigation, a collection of 192 accessions was used in the genome-wide association study (GWAS) for BLB resistance loci against four Korean races of Xoo that were represented by the prevailing BLB isolates under Xoo differential system. A total of 192 accessions of rice germplasm were selected on the basis of the bioassay using four isolated races of Xoo such as K1 and K2. The selected accessions was used to prepare 384-plex genotyping by sequencing (GBS) libraries and Illumina HiSeq 2000 pairedend read was used for GBS sequencing. GWAS was conducted using TASSEL 5.0. The TASSEL program uses a mixed linear model (MLM). The results of the bioassay using a selected set of 192 accessions showed that a large number of accessions (93.75%) were resistant to K1 race and K2 resistant germplasm proportion remained between 66.67. The genotypic data produced SNP matrix for a total of 293,379 SNPs. After imputation the missing data was removed, which exhibited 34,724 SNPs for association analysis. GWAS results showed strong signals of association at a threshold of [-log10(P-value)] more than 5 (K1 and K2) for nine of the 39 SNPs, which are plausible candidate loci of resistance genes. These SNP loci were positioned on rice chromosome 2, 9, and 11 for K1 and K2 races. The significant loci detected have also been illustrated and make the CPAS markers for NBS-LRR type disease resistance protein, SNARE domain containing protein, Histone deacetylase 19, NADP-dependent oxidoreductase, and other expressed and unknown proteins. Our results provide a better understanding of the distribution of genetic variation of BLB resistance to Korean pathogen races and breeding of resistant rice.

• Korean Journal of Organic Agriculture
• /
• v.13 no.3
• /
• pp.291-300
• /
• 2005

Diseases were surveyed in 5 Rice paddy field areas of Organic paddy field and conventional paddy field. The 3 major diseases, rice leaf blast, bacterial leaf blight and sheath blight in rice were surveyed at duck raising, rice bran and conventional rice paddy field. They were serious in duck raising paddy field, rice bran paddy field more than conventional paddy field. The Ilpum variety were infected seriously more than Chucheong. At the effectivity test of the environment-friendly substance for the rice-seed sterilization, 1000-times diluted brown-rice vinegar showed controlling effect against Bakanae disease, and germination rate also was good. There was no Weeds Control efficacy by cultivating of hairy vetch in rice paddy field. However, extract of hairy vetch Leaf and root repressed the germinating of lettuce seed.

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2018.04a
• /
• pp.21-21
• /
• 2018

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2018.10a
• /
• pp.212-212
• /
• 2018

• Korean journal of applied entomology
• /
• v.11 no.2
• /
• pp.55-60
• /
• 1972

The study has been carried to investigate the nature of resistance in rice varieties against bacterial leaf blight caused by Xanthomonas oryzae (Uyeda et. Ishiyama) Dowson. In this study, differences on several morphological histological and bacterial growth in rice leaf extract from different varieties were examined. Shirogane and Norm 6 as resistant varieties, Paldal as moderately resistant, and Jinheung, Kimmaze and Suwon 213 as susceptible varieties were used throughout the experiment. 1. Susceptible varieties Jinheung, Kimmaze have more hydathods in flag leaf than resistant varieties but there were no difference between resistant varieties and moderatly resistant varieties. 2. Average length of xylem vessel elements were 50r longer in leaf veins of susceptible varieties Jinheung, Kimnaze and Suwon 213 than those of resistant varieties, but there were no difference among Paldal, Norm 6 and Shirogane. 3. Kimmaze and Suwon 213 have larger diameter of xylem vessel elements than those of other varieties examined. However, it did not differ significantly between resistant varieries and susceptible varieties statistically. 4. Jinheung and Kimmaze have more secondary xylem vessels in root of 6-7th leaf stage than those of Shirogane and Norm 6. Suwon 213, however, showed least number of secondary xylem vessels exceptionally. 5. Leaf extract from resistnat variety Shirogane, suppressed bacterial growth significantly when compared with those from other varieties. 6. Bacterial growth in autoclaved leaf extract from resistant varieties and susceptible varieties did not show any noticeable difference. In general, fresh extract maintained more bacteria than in autoclaved extract after 48 hours of incubation period.

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2022.04a
• /
• pp.122-122
• /
• 2022

• Proceedings of the Plant Resources Society of Korea Conference
• /
• 2018.10a
• /
• pp.73-73
• /
• 2018

Bacterial leaf blight(BLB), caused by X. oryzae pv. oryzae(Xoo), is one of the most destructive diseases of rice due to its high epidemic potential. Understanding BLB resistance at a genetic level is important to further improve the rice breeding that provides one of the best approaches to control BLB disease. In the present investigation, a collection of 192 accessions was used in the genome-wide association study (GWAS) for BLB resistance loci against four Korean races of Xoo that were represented by the prevailing BLB isolates under Xoo differential system. A total of 192 accessions of rice germplasm were selected on the basis of the bioassay using four isolated races of Xoo such as K1, K2, K3 and K3a. The selected accessions was used to prepare 384-plex genotyping by sequencing (GBS) libraries and Illumina HiSeq 2000 paired- end read was used for GBS sequencing. GWAS was conducted using T ASSEL 5.0. The T ASSEL program uses a mixed linear model (MLM). T he results of the bioassay using a selected set of 192 accessions showed that a large number of accessions (93.75%) were resistant to K1 race, while the least number of accessions (34.37%) resisted K3a race. For races K2 and K3, the resistant germplasm proportion remained between 66.67 to 70.83%. T he genotypic data produced SNP matrix for a total of 293,379 SNPs. After imputation the missing data was removed, which exhibited 34,724 SNPs for association analysis. GWAS results showed strong signals of association at a threshold of [-log10(P-value)] more than5 (K1 and K2) and more than4 (K3 and K3a) for nine of the 39 SNPs, which are plausible candidate loci of resistance genes. T hese SNP loci were positioned on rice chromosome 2, 9, and 11 for K1 and K2 races, whereas on chromosome 4, 6, 11, and 12 for K3 and K3a races. The significant loci detected have also been illustrated, NBS-LRR type disease resistance protein, SNARE domain containing protein, Histone deacetylase 19, NADP-dependent oxidoreductase, and other expressed and unknown proteins. Our results provide a better understanding of the distribution of genetic variation of BLB resistance to Korean pathogen races and breeding of resistant rice.