• The Plant Pathology Journal
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• 제25권3호
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• pp.247-255
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• 2009

Root-knot nematode species, such as Meloidogyne hapla, M. incognita, M. arenaria, and M. javanica are the most economically notorious nematode pests, causing serious damage to a variety of crops throughout the world. In this study, DNA sequence analyses were performed on the D3 expansion segment of the 28S gene in the ribosomal DNA in an effort to characterize genetic variations in the three Meloidogyne species obtained from Korea and four species from the United States. Further, PCR-RFLP (Polymerase Chain Reaction-Restriction Fragment Length Polymorphism), SCAR (Sequence Characterized Amplified Region) PCR and RAPD (Randomly Amplified Polymorphic DNA) were also utilized to develop methods for the accurate and rapid species identification of the root-knot nematode species. In the sequence analysis of the D3 expansion segment, only a few nucleotide sequence variations were detected among M. incognita, M. arenaria, and M, javanica, but not M. hapla. As a result of our haplotype analysis, haplotype 5 was shown to be common in M. arenaria, M. incognita, M. javanica, but not in the facultatively parthenogenetic species, M. hapla. PCR-RFLP analysis involving the amplification of the mitochondrial COII and large ribosomal RNA (lrRNA) regions yielded one distinct amplicon for M. hapla at 500 bp, thereby enabling us to distinguish M. hapla from M. incognita, M. arenaria, and M. javanica reproduced via obligate mitotic parthenogenesis. SCAR markers were used to successfully identify the four tested root-knot nematode species. Furthermore, newly attempted RAPD primers for some available root-knot nematodes also provided some species-specific amplification patterns that could also be used to distinguish among root-knot nematode species for quarantine purposes.

• ALGAE
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• 제34권4호
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• pp.253-266
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• 2019

Several species classified to the genus Ulva are primarily responsible for causing green tides all over the world. For almost two decades, green tides have been resulted in numerous ecological problems along the eastern coast of Jeju Island, Korea. In order to characterize the species of Ulva responsible for causing the massive blooms on Jeju Island, we conducted DNA barcoding of tufA and rbcL sequences on 183 specimens of Ulva from eight sites on Jeju Island. The concatenated analysis identified five bloom-forming species: U. australis, U. lactuca, U. laetevirens, U. ohnoi and a novel species, U. pseudo-ohnoi sp. nov. Among them, U. australis, U. lactuca, and U. laetevirens caused to the blooms coming mainly from the substratum. U. ohnoi and U. pseudo-ohnoi sp. nov. were causative the free-floating blooms. Four species, except U. australis, are characterized by marginal teeth. A novel species, U. pseudo-ohnoi sp. nov., is clearly diverged from the U. lactuca, U. laetevirens, and U. ohnoi clade in the concatenated maximum likelihood analysis. Accurate species delimitation will contribute to a management of massive Ulva blooms based on this more comprehensive knowledge.

• Journal of Forest and Environmental Science
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• 제34권1호
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• pp.66-70
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• 2018

Preliminary investigation and analysis of the effectiveness of controlling the number of ecosystem disturbance fishes residing in Togyo reservoir using the native carnivorous fish species were performed. The data were collected from August 2011 to November 2016. The release of native carnivorous fish species was carried out from the end of May, 2012 to the end of July, 2016, considering fishing ban period of Siniperca scherzeri. The comparative abundance of Lepomis macrochirus was found to be 12.8% in the first year and increased a little bit after releasing the native carnivorous fish. However, it decreased to 3.9% in the last year showing a value of less than 5%. On the other hand, the Micropterus salmoides populations tended to increase after the release of native carnivorous fish species. This seems to be the result of the segregation of habitat by interspecific competition with S. scherzeri. The M. salmoides moved from inside of the lake to edges, and to influent tributaries. Stable isotope analysis showed that Channa argus had the highest levels of nutrition, S. scherzeri and M. salmoides were in competition, and L. macrochirus was used as a feed source for released species. Changes of the fish community in the Togyo reservoir was represented by the rank abundance curves based on the results of the fish fauna. As a result, the fish group in incoming tributaries are somewhat disturbed after the release of the native carnivorous species. Similarly, the fish group in the reservoir were disturbed as well but it's gradually stabilizing afterwards. Therefore, the control of the ecosystem disturbance species using the native carnivorous fish of Korea is effective and helps to stabilize the fish community in the lake.

• Animal cells and systems
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• 제1권2호
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• pp.305-311
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• 1997

Dermaptera was investigated, examined and reviewed in taxonomy and for distribution in Youngnam region. Based on the data, the local species groups were measured to choose priority-conservation-area by taxonomic root weighting and distribution analysis at 232 geographical conservation units. Eleven species belonging to 4 families and 8 genera were recorded mounting up to 68.75% of species diversity known in Korea. Found remarkably were the rare and endangered Challia fletcheri Burr at Sobaek Mountain National Park, and unusually Anisolabis maritima (Bonelli) in Taegu, Euborellia pallipes (Shiraki) at Island Geoje and E. plebeja (Dohrn) at Hwanho near Pohang. The highest species diversity was found at the temple Huibang area at Sobaek Mountain National Park with 8 species, which was measured also as the primary priority-conservation-area with 83.41 % of accumulated taxonomic root weighting indices in percentage. Geoje and Hwanho both measured as 12.18% of accumulated taxonomic root weighting index in percentage and complimentary to Sobaek Mountain National Park but supporting 5 and 3 species, respectively. The priority goes to the geographical conservation unit supporting higher species richness between two geographical conservation units in comparison. By the rule, the second priority-conservation-area should be Geoje and the third Hwanho. It is, thus, demonstrated how 11 species can be all conserved by choosing 3 priority-conservation-areas out of 232 geographical conservation units to maintain maximum species in minimum areas.

• The Korean Journal of Ecology
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• 제18권3호
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• pp.307-321
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• 1995

Division of ecoregions having respective functions was attempted through quantitative and qualitative analysis on vegetation diversity, and heterogeneity and on soil environment of the study sites. Field research was carried out in a square of 81 ㎢ around Andongpo (126°38'E, 37°30'N), Kimpo-gun, Kyonggi provice. Conventional methods applied are as follows: classical syntaxonomy by the Zurich-Montpellier School, interpolation method to determine the degree of diversity, heterogeneity and distribution pattern of vegetation, and correlation analysis between soil properties and plant communities. 41 plant communities were identified and composed of 6 forests, 4 mantle and 31 herb communities including 6 saltmarsh plant communities. In a mesh, number of plant communities was highly correlated to the number of species. The highest number of plant community and species was 25 communities·km-2·mesh-1 and 381 species· km-2·mesh-1 ,and the highest value of vegetation heterogeneity was 28.1 species· community-1·mesh-1. Their lowest numbers were 4 communities·km-2·mesh-1. and 28 species·km-2·mesh-1. and 7 species·community-1·mesh-1, respectively. Contour map on vegetation diversity and heterogeneity enabled us to establish two regions; coastal and inland vegetation. Isoline 〔150〕,〔10〕and〔10〕and〔15〕on the species diversity, the community diversity and the vegetation heterogeneity, respectively, were regarded as ecolines in the study area. Cl- content was recognized as the most important factor from correlation analysis between soil properties. Ordination of sites indicated that the study area be divided into two edaphic types: inland and coastal habitats. It was considered that the extent of desalinization in soil played a major role in determining the species composition in the reclamed area. By matching edaphic division of habitats with division of vegetation structures, designation of ecoregion was endorsed. The approach of current study was suggested as an effective tool to implement an assessment of the vegetation dynamics by the disparity of natural environment and anthropogenic interferences.

• Journal of Microbiology and Biotechnology
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• 제22권8호
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• pp.1107-1112
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• 2012

Outbreaks of foodborne diseases associated with Vibrio species such as V. parahaemolyticus, V. vulnificus, and V. cholerae frequently occur in countries having a dietary habit of raw seafood consumption. For rapid identification of different Vibrio species involved in foodborne diseases, whole-cell protein pattern analysis for 13 type strains of 12 Vibrio species was performed using SDS-PAGE analysis. Pathogenic Vibrio species such as V. parahaemolyticus, V. vulnificus, V. cholerae, V. alginolyticus, V. fluvialis, and V. mimicus were included in the 12 Vibrio species used in this study. Each of the 12 Vibrio species showed clearly specific band patterns of its own. Two different strains of V. parahaemolyticus showed two different SDS-PAGE whole-cell protein patterns, giving the possibility of categorizing isolated strains in the same V. parahaemolyticus species into two subgroups. The 36 Vibrio isolates collected from sushi restaurants in Busan were all identified as V. parahaemolyticus by comparing their protein patterns with those of Vibrio type strains. The identified isolates were categorized into two different subgroups of V. parahaemolyticus. The whole-cell protein pattern analysis by SDS-PAGE can be used as a specific, rapid, and simple identification method for Vibrio spp. involved in foodborne diseases at the subspecies level.

• 생태와환경
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• 제43권4호
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• pp.459-470
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• 2010

In this study, we analyzed fish tolerance guilds in mainstems and tributaries of 65 streams and rivers arid their relations to water quality using dataset sampled from April to November, 2009. For the study, water quality parameters including biochemical oxygen demand (BOD), electric conductivity (EC), total nitrogen (TN), total phosphorus (TP), ammonia nitrogen ($NH_3$-N), nitrate nitrogen ($NO_3$-N) and phosphate phosphorus ($PO_4$-P) were analyzed in the laboratory and also tolerance ranges in 3 category fishes of sensitive, intermediate, and tolerant species with high abundance were analyzed. According to fish guild analysis, tolerant species was 58% of the total community and the proportion of omnivore species was 63% of the total, indicating a degradation of habitats and water quality. Water quality was shown typical longitudinal gradients from the headwater to the down-river; TN and TP increased toward the down-rivers except for the big point-source area and ionic contents, based on, electric conductivity showed same pattern. Tolerance guild analysis of 9 major species with high abundance indicated that sensitive groups had narrower tolerance range in the water quality than the groups of intermediate and tolerant species. In contrast, tolerant groups including Zacco platypus, Carassius auratus, and Opsarichthys uncirostris amurensis had wider tolerance ranges than the groups of sensitive and intermediate species. Thus, each group was evidently segregated from the tolerance levels. Principal Component Analysis (PCA) employed for the relations of water quality to fish species in each groups suggests that water quality had highest eigenvalues with fish species in the 1st axis of the PCA and nitrogen (TN, $NH_3$-N, $NO_3$-N) and phosphorus (TP) were key components differentiating three groups of sensitive, intermediate and tolerance guilds.

• 보존과학회지
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• 제30권4호
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• pp.329-334
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• 2014

고대 섬유의 과학적 분석은 그 시대에 사용된 재료의 특성 및 각 지역의 직물문화, 제직기술 등을 파악할 수 있는 중요한 자료를 제공한다. 또한 수침 고목재의 수종분석은 보존처리 방법의 설정뿐만 아니라 당시의 수목환경, 목제품의 종류에 따라 선호되던 수종, 외래수종을 통한 당시의 교역 교류 등의 정보를 확인할 수 있는 과학적인 분석방법이다. 충남 연기군 동면 합강리 유적에서 청동합 내 부장상태로 출토된 직물류와 목제 빗에 대하여 섬유 및 수종의 종류를 분석한 결과 직물1과 직물3은 쐐기풀과(Urticaceae)의 저마(Boehmeria nivea ; Ramie), 직물2는 아욱과(Malvaceae)의 면(Gossypium herbaceum), 목제 빗은 자작나무과(Betulaceae) 자작나무속(Betula spp.)으로 식별되었다. 이번 연구 결과는 향후 고대 섬유 및 수종을 확인하여 비교 연구하는데 도움이 될 것으로 기대된다.

• The Korean Journal of Ecology
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• 제8권4호
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• pp.205-214
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• 1985

At the Changnyeung natural bod, the flood in the freshwater wetland and the adaptation of the insect at this area were investigated by the species diversity index and the cluster analysis. Most dominant species was Diplonychus esakii collected at the site of the water edge and its dominance index was 0.797. This area had lower species diversity indices with the value of 0.340 to 1.712 than that of the grassland and water stream. The number of the species in this area was not rich. Some ground beetles inhabited at the flooded or wet area were important species for the pair group between the sites by the cluster analysis. The composition of the insect species at this natural wetland affected by the irregular flood was very simple and specific.

• 한국균학회지
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• 제49권4호
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• pp.425-431
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• 2021

New species of arbuscular mycorrhizal fungi (Glomeromycota), Acaulospora jejuensis, was isolated from rhizosphere soils of Miscanthus sinensis in the grassland in Jeju Island of Korea. The species was identified using the morphological characteristics of the spores and the molecular phylogenetic analysis using partial DNA sequences from small subunit rDNA (SSU), internal transcribed spacer (ITS), and large subunit rDNA (LSU). Phylogenetic analysis placed the fungal species in a distinct clade within genus Acaulospora. Also, the species exhibited the morphological characteristics distinct from the other members of the genus. Therefore, Acaulospora jejuensis was described as a novel species from Korea.