• Title/Summary/Keyword: analysis of Species

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Interspecific Relationship of Polygonatum Species Collected from Gyeongnam Area Using Cluster Analysis (경남지역 둥굴레속의 Cluster 분석에 의한 종간 유연관계)

  • Shim, Jae-Suk;Park, Jeong-Min;Jeon, Byong-Sam;Kang, Jin-Ho
    • Korean Journal of Medicinal Crop Science
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    • v.13 no.1
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    • pp.30-34
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    • 2005
  • Polygonatum species are a useful medical crop in Korea but basic study in the species was not well conducted. The study was carried out to analyse genetic diversity and intraspecific relationship of 47 Polygonatum species collected from Gyeongnam province. Their analysis was done through principle component analysis and average linkage cluster analysis with their twelve morphological traits. The result of principle component analysis showed the Prin 1, Prin 2 and Prin 3 represented 79% of total variation. By the 0.7 average distance of the cluster analysis and the calculated Euclidian distance, the 47 collected species were grouped into five groups. Group I included 22 collected species representing P. ordoratum var. pluriflorum, group II did 5 ones representing P. involucratum, group III was divided into two subclasses, 2 species including P. inflatum and 7 species including P. thunbergii, group IV also consisted of 2 subclasses, a species similar to P. thunbergii and P.involucratum, respectively, and finally group V included 8 species representing P.lasianthum var. coreanum. meaning that the useful germplasms can be collected from relatively small area.

Analysis of Plant Species Community within Upland Wetlands at Mt. Ilgwang

  • Huh, Man-Kyu
    • Journal of Environmental Science International
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    • v.20 no.4
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    • pp.427-434
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    • 2011
  • This study characterized the full range of vegetation in a upland wetland (marshland) in Korea. Classified community types were used to describe vegetation at the marshland and adjacent areas. The communities contained 44 species of vascular plants and all species were identified into four plant community types. The Rhododendron yedoense f. poukhanense type and Lespedeza cyrtobotrya type had a high representation infacultative upland species (FU) and obligate upland species (OU), respectively. The monocot type was dominant in marshland by Miscanthuns saccharifloruc and contained 14 species. Together the three areas contained four species, with the strongest indicator species being Ranunculus acris var. nipponicus, Rhododendron yedoense f. poukhanense, Hemerocallis fulva, and Miscanthuns sinensis var. purpurascens. Shannon-Weaver index of diversity also varied among the community types (F = 18.9, df = 2), with the types FU having significantly higher value (3.467) than the others (1.125 for type FW and 1.239 for type OU).

Hybridization of Quercus aliena Blume and Q. serrata Murray in Korea - Analyses of Morphological variation and Flavonoid chemistry -

  • Park, Jin Hee;Park, Chong-Wook
    • Korean Journal of Environment and Ecology
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    • v.29 no.2
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    • pp.145-161
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    • 2015
  • This research was conducted in order to understand the hybridization between Quercus aliena Blume and Q. serrata Murray in Korea which show wide range of morphological variations within species and interspecific variations of diverse overlapping characteristics caused by hybridization. Morphological analysis (principal components analysis; PCA) of 116 individuals representing two species and their intermediates were performed. As a result, two species were clearly distinguished in terms of morphology, and intermediate morpho-types assumed to be hybrids between the two species were mostly located in the middle of each parent species in the plot of the principal components analysis. There was a clear distinction between two species in trichome distribution pattern which is an important diagnostic character in taxonomy of genus Quercus, whereas intermediate morpho-types showed intermediate state between two species' trichome distributions. Forty-two individuals representing two species and their intermediates were examined for leaf flavonoid constituents. Twenty-three flavonoid compounds were isolated and identified: They were glycosylated derivatives of flavonols, kaempferol, quercetin, isorhamnetin and myricetin. The flavonoid constituents of Q. aliena were five glycosylated derivatives: kaempferol 3-O-galactoside, kaempferol 3-O-glucoside, quercetin 3-O-galactoside, quercetin 3-O-glucoside, and Isorhamnetin 3-O-glucoside. The flavonoid constituents of Q. serrata had 20 diverse flavonol compounds including five flavonoid compounds found in Q. aliena. It was found that there is a clear difference in flavonoid constituents of Q. aliena and Q. serrata. Flavonoid chemistry is very useful in recognizing each species and putative hybrids. The flavonoid constituents of intermediates were a mixture of the two species' constituents and they generally showed similar characteristics to morpho-types. The hybrids between Q. aliena and Q. serrata showed morphologically and chemically diverse characteristics and it is assumed that there are frequent interspecific hybridization and introgression.

Utilization of fish gut analysis to elucidation of microcrustacean species composition (cladoceran and copepoda) in a shallow and vegetated lake (Jangcheok Lake, South Korea)

  • Choi, Jong-Yun;Jeong, Kwang-Seuk;Lee, Eunkyu;Choi, Kee-Ryong;Joo, Gea-Jae
    • Journal of Ecology and Environment
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    • v.37 no.3
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    • pp.147-153
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    • 2014
  • Structural heterogeneity results in different spatial distributions of microcrustaceans. Thus, in ecosystems with excessive macrophyte development, it may be difficult to determine the microcrustacean species composition. Given the importance of microcrustaceans in the food web, the elucidation of microcrustacean diversity is essential. In vegetated habitats, bluegill sunfish can prey on microcrustaceans, and therefore have a potential role as microcrustacean monitoring agents. In the present study, we compared microcrustacean species compositions in the field with those in the guts of bluegill, in Jangcheok Lake, South Korea. Our results showed that the number of microcrustacean species was higher in bluegill guts than in the field. Further, microcrustacean species, such as Daphnia galeata, Graptoleveris testudinaria, Leydigia leydigii, Rhynchotalona sp., and Simocephalus exponisus, were found only in bluegill guts. Our findings verify the validity of the fish gut analysis to monitor microcrustacean species compositions and to clarify spatial distributions of microcrustacean species in structurally heterogeneous ecosystems with excessive macrophyte development.

Population Structure of Stagonosporopsis Species Associated with Cucurbit Gummy Stem Blight in Korea

  • Jeong, Yong-Jik;Kwon, Oh-Kyu;Jeong, A-Ram;Lee, Hyunji;Moon, Hyeran;Lee, O New;Hong, Jeum Kyu;Park, Chang-Jin
    • The Plant Pathology Journal
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    • v.38 no.5
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    • pp.522-532
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    • 2022
  • Gummy stem blight (GSB), a common and serious disease in cucurbits worldwide, is caused by three genetically distinct species: Stagonosporopsis cucurbitacearum (syn. Didymella bryoniae), S. citrulli, and S. caricae. In Korea, however, the three species of Stagonosporopsis have been barely characterized. In this study, 21 Stagonosporopsis isolates were recovered from watermelon (Citrullus lanatus) and muskmelon (Cucumis melo) leaves and stem showing blight symptoms collected from 43 fields in Korea. Sequence analysis performed with an internal transcribed spacer region was not competent to differentiate the Stagonosporopsis isolates. On the contrary, analysis of β-tubulin (TUB) genes and three microsatellite markers, Db01, Db05, and Db06, successfully differentiated Stagonosporopsis isolates. Further sequence analysis identified two Stagonosporopsis species, S. citrulli and S. caricae, and one previously unknown species of Stagonosporopsis. Representative isolates from three species caused dark water-soaked lesions on the detached watermelon and muskmelon leaves with no significant differences in the aggressiveness. Our results indicate that the S. citrulli, S. caricae, and unknown Stagonosporopsis sp. are all causal agents of GSB for both watermelon and muskmelon. This is the first report of a new species and the population structure of Stagonosporopsis species causing GSB in Korea.

Phylogenetic Relationships among Allium subg. Rhizirideum Species Based on the Molecular Variation of 5S rRNA Genes

  • Do, Geum-Sook;Seo, Bong-Bo
    • Animal cells and systems
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    • v.4 no.1
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    • pp.77-85
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    • 2000
  • This study has demonstrated the molecular variation of 5S rRNA genes in 15 Allium subgenus Rhizirideum and 1 Allium subg. Allium. For cloning of the 5S rRNA genes, PCR products were obtained from amplification with oligonucleotide primers which were derived from the conserved coding region of 5S rRNA genes. These amplified PCR products were cloned and identified by FISH and sequence analysis. The 5S rRNA loci were primarily located on chromosomes 5 and/or 7 in diploid species and various chromosomes in alloploid species. The size of the coding region of 5S rRNA genes was 120 bp in all the species and the sequences were highly conserved within Allium species. The sizes of nontranscribed spacer (NTS) region were varied from 194 bp (A. dektiude-fustykisum, 2n=16) to 483 bp (A. sativum). Two kinds of NTS regions were observed in A. victorialis var. platyphyllum a diploid, A. wakegi an amphihaploid, A. sacculiferum, A. grayi, A. deltoide-fistulosum and A. wenescens all allotetraploids, while most diploid species showed only one NTS region. The species containing two components of NTS region were grouped with different diploid species in a phylogenetic tree analysis using the sequences of 5S rRNA genes and adjacent non-coding regions.

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Analysis of Functional Habitat Groups of Benthic Macroinvertebrates according to Changes in the Riverbed (하상 변화에 따른 저서성 대형무척추동물의 서식기능군 분석)

  • Lee, Seul Hee;Lee, Mi Jin;Seo, Eul Won;Lee, Jong Eun
    • Journal of Environmental Science International
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    • v.26 no.3
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    • pp.373-380
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    • 2017
  • This study identified the effect of changes in the riverbed on the benthic macroinvertebrate communities. The benthic macroinvertebrates collected from the surveyed sites belonged to 119 species, 65 families, 20 orders, and 7 classes in 4 phyla. The number of Ephemeroptera, Plecoptera, and Trichoptera (E.P.T) species was 42, 10, and 8, respectively, in the tributary, confluence, and Nakdong River sites. Lotic species (Hydropsychidae) showed a high density at the tributary sites, whereas lentic species (Chironomidae) showed a high density at the confluence and Nakdong River sites. Community analysis showed that the Dominance Index (DI) was 0.54 in tributary sites, and dominance indices increased closer to the Nakdong River sites. The diversity index (H') was inversely proportional to DI. The ratio of Burrowers species (BU) at the surveyed sites increased closer to the Nakdong River sites. Analysis of common species showed 37 species (34.6%) between the tributary and confluence sites and 66 species (51.5%) between the confluence and Nakdong River sites.

Soil Microarthropods at the Kwang Yang Experiment Plantation -1. Composition of Oribatid Mites (Acari: Cryptostigmata)- (서울대 광양연습림내 토양 미소 절지동물에 관한 연구 -1. 날개응애의 종조성)

  • Kwak, Joon Soo
    • The Korean Journal of Ecology
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    • v.10 no.1
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    • pp.23-31
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    • 1987
  • This study was carried out to investigate by the MGP analysis the composition of oribatid mite in coniferous and broad-leaved forests, Kwang Yng experiment plantation, Chola Nam Do Province, southern part of Korea. In these study area, 157 species of oribatid mites (Acari: Cryptogimata) were identified. Among them 6 species such as; Brachychochthonius jugatus JACOT, B hungaricus BALOGH, Eremulus translamealtus BALOGH et. MAHUNKA, Brachioppiella ctenifera GOLOSOVA, Striatoppia opuntiseta BALOGH et. MAHUNKA, Suctobelba perdentata baculifer BALOGH et. MAHUNKA have not been described in Korea. Species compositions were as follows; Among them 69 species were found in all the six sampling sites, 33 species scattered sporadically in all the area, 12 species found in coniferous forest, 10 species in broad-leaved forest only, and 33 species sampled at one site. According to the MGP analysis I, site B-1, B-2, and B-3 were found to be "Type G" and site C-1, C-2, and C-3 were "Type MG". According to the MGP analysis II, site B were found to be all "Type G". But site C-1 was "Type MG", C-2 was "Type M" and C-3 was "Type G" suggesting that "Group M" increased in the site C.e G" suggesting that "Group M" increased in the site C. in the site C.

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Cluster Analysis of the Foliose Lichens in Mt. Duckyoo (덕유산 엽상지의식물의 집락분석)

  • Park, Seung Tai
    • The Korean Journal of Ecology
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    • v.6 no.2
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    • pp.145-151
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    • 1983
  • The epiphytic lichen communities were analysed in terms of cluster analysis on forty two stands and eight environmental variables in Mt. Duckyoo. Ordination of stand and species by principal component analysis (PCA) and sum of square algorithm (SSA) gave similar results. Species cluster showed three groups(I, II, III) and stand revealed three groups (A, B, C). Interaction of stand and species cluster was interpreted by analysis of concentration technique. The results indicated a significant cluster structure at the level of different environment variable.

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Island Biogeographic Study on Distribution Pattern of the Naturalized Plant Species on the Uninhabited Islands in Korea (우리나라 무인도서의 귀화식물 분포에 대한 섬생물지리적 연구)

  • Chung, Jae-Min;Hong, Kyung-Nak
    • Journal of Ecology and Environment
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    • v.29 no.6
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    • pp.489-494
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    • 2006
  • For the ecosystem conservation and the effective management of naturalized plant species on 261 uninhabited islands distributed in southern and western sea in Korea, we tested the interrelationship between the pattern of distribution and dispersal of the naturalized plant species and the factors of geographical environment of uninhabited islands such as island area, distance from mainland, latitude, longitude, human impacts and habitat diversity. Out of 261 uninhabited islands surveyed, 106 species of the naturalized plants occurred on 229 (87.7%) islands. The naturalized plant species per island averaged 4.6 (SD=4.07) species, and plant species number were higher in southern group (87 species) than in western group (64 species) of islands. Plant species occurred on more than 100 islands were three species : Rumex crispus L. (153 islands), Erigeron annuus Pers. (130 islands), and Conyza canadensis (L.) Cronquist (121 islands), the highest grade '5' of 'degree of naturalization'. The occurrence frequency of 106 naturalized plant species was significantly correlated with island area, distance to mainland, strength of human impacts, and latitude and longitude. Correlation coefficient (r=-0.330) between occurrence frequency and distance from mainland was higher than between occurrence frequency and island area (r=-0.182). The result of path analysis confirmed that plant species number was significantly affected by island area p=0.336) and distance from mainland (p=-0.490), but in this analysis the effect of human impacts on plant species number was very weak (p=0.003). On the basis of these results, strategies on the conservation of ecosystem and the management of naturalized plant species in the uninhabited islands of Korea were discussed.