• Title/Summary/Keyword: alignment matrix

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An Approach for a Substitution Matrix Based on Protein Blocks and Physicochemical Properties of Amino Acids through PCA

  • You, Youngki;Jang, Inhwan;Lee, Kyungro;Kim, Heonjoo;Lee, Kwanhee
    • Interdisciplinary Bio Central
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    • v.6 no.4
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    • pp.3.1-3.10
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    • 2014
  • Amino acid substitution matrices are essential tools for protein sequence analysis, homology sequence search in protein databases and multiple sequence alignment. The PAM matrix was the first widely used amino acid substitution matrix. The BLOSUM series then succeeded the PAM matrix. Most substitution matrixes were developed by using the statistical frequency of substitution between each amino acid at blocks representing groups of protein families or related proteins. However, substitution of amino acids is based on the similarity of physiochemical properties of each amino acid. In this study, a new approach was used to obtain major physiochemical properties in multiple sequence alignment. Frequency of amino acid substitution in multiple sequence alignment database and selected attributes of amino acids in physiochemical properties database were merged. This merged data showed the major physiochemical properties through principle components analysis. Using factor analysis, these four principle components were interpreted as flexibility of electronic movement, polarity, negative charge and structural flexibility. Applying these four components, BAPS was constructed and validated for accuracy. When comparing receiver operated characteristic ($ROC_{50}$) values, BAPS scored slightly lower than BLOSUM and PAM. However, when evaluating for accuracy by comparing results from multiple sequence alignment with the structural alignment results of two test data sets with known three-dimensional structure in the homologous structure alignment database, the result of the test for BAPS was comparatively equivalent or better than results for prior matrices including PAM, Gonnet, Identity and Genetic code matrix.

A STUDY OF MAGNETIC ALIGNMENT OF DIE-UPSET Pr-Fe-B-Cu MAGNETS

  • Kwon, H.W.;Ma, T.J.;Harris, I.R.
    • Journal of the Korean Magnetics Society
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    • v.5 no.5
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    • pp.416-420
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    • 1995
  • An attempt has been made to investigate the mechanism of magnetic alignment in the magnets produced by upset forging the $Pr_{20}Fe_{74}B_{4}Cu_{2}$ cast bulk alloy. Upset forging of the cast alloy was carried out for 20 sec to an 80 % thickness reduction (strain rate : $4{$\times}10^{-2}s^{-1}$) in an open die configuration at varying temperatures in the range $600^{\circ}-900^{\circ}C$. It has been found that the upset forging process at temperatures above $800^{\circ}C$ can achieve a magnetic alignment to a great extent from copper-containing Pr-Fe- B-type cast ingot. The growth manner of the ferromagnetic $Pr_{2}Fe_{14}B$ matrix grain in Pr-Fe-B-type alloys was studied by examining the morphology change of the matrix grain in sintered body, and it was found that the matrix grains grew in anisotropic manner such that the grain grew more rapidly along the a- or b-axis than along the c-axis. This anisotropic grain growth led to the plate-like shape of the matrix grain. The magnetic alignment during the upset forging was attributed to grain boundary gliding of the plate-like grains, and the geometry of the grains in the cast ingot and the presence of a large amount of the praseodymium-rich grain boundary phase were thought to play a key role in the achievement of magnetic alignment.

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A Study on the Propulsion Shaft Alignment Calculation by the Matrix Method of Three-Moment Theory (삼연모먼트정리의 매트릭스산법에 의한 박용추진축계 배치계산에 관한 연구)

  • 문덕홍;전효중
    • Journal of Advanced Marine Engineering and Technology
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    • v.5 no.1
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    • pp.20-27
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    • 1981
  • The alignment of propulsion shaft systems by the fair curve method has been developed over the past twenty years and in recent years its basic problems have been almost solved. At the present time, studies on introducing actual conditions are being undertaken. In a fair curve alignment, its aim is to achieve a stable shaft system which will be relatively insensitive to misalignment or the influence of external factors such as thermal variations due to the sunshine, speed change, etc. The key point of fair curve alignment is the calculations of reactions in the straight support and reaction influence numbers. The present authors have developed those calculating method by the matrix method of the three-moment theorem. The fair curve alignment is based on the analysis of propulsion shaft system which is assumed as a continous beam on multiple support points. The propeller shaft is divided into several elements. For each element, the nodal point equation is derived by the three-moment theorem. Reaction of supporting points of straight shaft and reaction influence numbers are calculated by the matrix calculation of each nodal point equation. It has been found that results of calculation for the model shaft agree well with those of experiment which had been measured by the strain gauge method. Results of calculation for the actual propulsion shafting of the steam turbine had been compared also with those of Det norske Vertas.

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Development of the Real-time Initial Alignment Algorithm using the Kalman Filter

  • Oh, Sang-Heon;Hwang, Dong-Hwan;Lee, Sang-Jeong
    • 제어로봇시스템학회:학술대회논문집
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    • 2001.10a
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    • pp.61.2-61
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    • 2001
  • The purpose of the initial alignment of a SDINS is to get a coordinate transformation matrix from the body frame to the navigation frame. The initial alignment is one of the most important processes in the navigation system since its error has a large influence on the navigation solution. In this paper, a real-time initial alignment algorithm for the SDINS is developed using the Kalman filter. The steady state error analysis is performed for the developed Kalman filter technique and the gyrocompass loop method. The performance of the developed alignment method is compared with the gyrocompass loop method through the real-time alignment experiments.

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SDINS Closed Loop Self-Alignment Algorithm using Pseudo Initial Position (가상의 초기위치를 이용한 SDINS 폐루프 자체 정렬 알고리즘)

  • Kim, Taewon
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.45 no.6
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    • pp.463-472
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    • 2017
  • Inertial Navigation System Alignment is the process to determine direction cosine matrix which is the transformation matrix between the INS body frame and navigation frame. INS initial position value is necessary to INS attitude calculation, so that user should wait until he get such value to start the INS alignment. To remove the waiting time, we propose an alignment algorithm that immediately starts after the INS power on by using pseudo initial position input and then is completed with attitude error compensation by entering true position later. We analyse effect of INS sensor error on attitude in process of time and verify the performance and usefulness of the close-loop alignment algorithm which corrects attitude error from the change of initial position.

The study of drawing on the heterogeneous materials for the unidirectional alignment of carbon nanofiber in metal matrix nanocomposite (금속기지 나노복합재용 탄소나노섬유 일방향 배열을 위한 이종재 인발 연구)

  • 백영민;이상관;엄문광;김병민
    • Proceedings of the Korean Society for Technology of Plasticity Conference
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    • 2003.10a
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    • pp.301-301
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    • 2003
  • In current study, Nanocomposites are reinforced with carbon nanofiber, carbon nanotube and SiC, etc. Since the nano reinforcements have the excellent mechanical, thermal and electrical properties compared with that of existing composites, it has lately attracted considerable attention in the various areas. Cu have been widely used as signal transmission materials for electrical electronic components owing to its high electrical conductivity. However, it's size have been limited to small ones due to its poor mechanical properties. Until now, strengthening of the copper alloy was obtained either by the solid solution and precipitation hardening by adding alloy elements or the work hardening by deformation process. Adding the alloy elements lead to reduction of electrical conductivity. In this aspect, if carbon nanofiber is used as reinforcement which have outstanding mechanical strength and electric conductivity, it is possible to develope Cu matrix nanocomposite having almost no loss of electric conductivity. It is expected to be innovative in electric conducting material market. The unidirectional alignment of carbon nanofiber is the most challenging task developing the cooer matrix composites of high strength and electric conductivity. In this study, the unidirectional alignment of carbon nanofibers which is used reinforced material are controlled by drawing process and align mechanism as well as optimized drawing process parameter are verified via numerical analysis. The materials used in this study were pure copper and the nanofibers of 150nm in diameter and of 10∼20$\mu\textrm{m}$ in length. The materials have been tested and the tensile strength was 75MPa with the elongation of 44% for the copper. it is assumed that carbon nanofiber behave like porous elasto-plastic materials. Compaction test was conducted to obtain constitutive properties of carbon nanofiber Optimal parameter for drawing process was obtained by analytical and numerical analysis considering the various drawing angles, reduction areas, friction coefficient, etc. The lower drawing angles and lower reduction areas provides the less rupture of co tube is noticed during the drawing process and the better alignment of carbon nanofiber is obtained.

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Comparison between Two Coordinate Transformation-Based Orientation Alignment Methods (좌표변환 기반의 두 자세 정렬 기법 비교)

  • Lee, Jung-Keun;Jung, Woo-Chang
    • Journal of Sensor Science and Technology
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    • v.28 no.1
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    • pp.30-35
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    • 2019
  • Inertial measurement units (IMUs) are widely used for wearable motion-capturing systems in the fields of biomechanics and robotics. When the IMUs are combined with optical motion sensors (hereafter, OPTs) for their complementary capabilities, it is necessary to align the coordinate system orientations between the IMU and OPT. In this study, we compare the application of two coordinate transformation-based orientation alignment methods between two coordinate systems. The first method (M1) applies angular velocity coordinate transformation, while the other method (M2) applies gyroscopic angle coordinate transformation. In M1 and M2, the angular velocities and angles, respectively, are acquired during random movement for a least-square algorithm to determine the alignment matrix between the two coordinate systems. The performance of each method is evaluated under various conditions according to the type of motion during measurement, number of data points, amount of noise, and the alignment matrix. The results show that M1 is free from drift errors, while drift errors are present in most cases where M2 is applied. Thus, this study indicates that M1 has a far superior performance than M2 for the alignment of IMU and OPT coordinate systems for motion analysis.

New Interference Alignment Technique using Least Square Method in Multi-User MIMO Systems (다중 사용자 MIMO 시스템에서 최소 제곱 기법을 이용한 새로운 간섭 정렬 기법)

  • Jo, Myung-Ju;Byun, Youn-Shik
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.37 no.6A
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    • pp.488-496
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    • 2012
  • In this paper, the scheme for designing optimal beamforming matrix for interference control is proposed. The optimal beamforming matrix is found though linear combination of interference alignment conditions and renewal of linear combination coefficient. The proposed scheme has advantages that the complexity is reduced and there is no multiplying operation in matrix calculations even if proposed scheme has the form similar to that of existing least square based scheme. The simulation results show that proposed scheme has about 4bps/Hz higher gain than existing least square scheme. Also there is no additional multiplying calculation and increase of matrix size when the number of transmit and receive antennas is increased.

Thermal Properties according to Content and Alignment of Carbon Fiber in Cu Matrix Composite Reinforced with Chopped Carbon Fiber (탄소 단섬유가 첨가된 Cu기지 복합재료의 섬유 분율 및 배열에 따른 열적 특성)

  • Kim, Minkyoung;Han, Jun Hyun
    • Korean Journal of Materials Research
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    • v.31 no.11
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    • pp.626-634
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    • 2021
  • Cu matrix composites reinforced with chopped carbon fiber (CF), which is cost effective and can be well dispersed, are fabricated using electroless plating and hot pressing, and the effects of content and alignment of CF on the thermal properties of CF/Cu composites are studied. Thermal conductivity of CF/Cu composite increases with CF content in the in-plane direction, but it decreases above 10% CF; this is due to reduction of thermal diffusivity related with phonon scattering by agglomeration of CF. The coefficient of thermal expansion decreases in the in-plane direction and increases in the through-plane direction as the CF content increases. This is because the coefficient of thermal expansion of the long axis of CF is smaller than that of the Cu matrix, and the coefficient of thermal expansion of its short axis is larger than that of the Cu matrix. The thermal conductivity is greatly influenced by the agglomeration of CF in the CF/Cu composite, whereas the coefficient of thermal expansion is more influenced by the alignment of CF than the aggregation of CF.

Implementation of an Initial Alignment Algorithm for a Stapdown Inertial Navigation system (스트랩다운 관성항법시스템의 초기정렬 알고리즘 구현)

  • Kim, Jong-Hyuk;Moon, Sung-Wook;Lee, See-Ho;Kim, Se-Hwan;Hwang, Dong-Hwan;Lee, Sang-Jeong;Ra, Sung-Woong
    • Journal of Institute of Control, Robotics and Systems
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    • v.6 no.2
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    • pp.138-145
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    • 2000
  • In this paper an initial alignment algorithm for a strapdown inertial navigation system is implemented using a RISC CPU board. The algorithm computes roll pitch and yaw angles of the direction cosine matrix utilizing measured components of the specific force and earth rate when the navigation system is stationary. The coarse alignment algorithm is performed first and then the fine alignment algorithm containing a 3rd-order gyrocompass loop follows. The experimental set consists of an IMU a CPU board and a monitoring system Experimental results show that the implemented algorithm can be utilized in navigation systems.

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