• Title/Summary/Keyword: ab initio

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Ab Initio and Semi-Empirical Calculations of the Tautomers of Pyrazole Derivatives (Pyrazole 유도체들의 Tautomer들에 대한 Ab Initio와 Semi-Empirical 계산)

  • Lee, Hong Gi;Yim, Seon Hwa;Jung, Sung Gyung;Kang, Sung Kwon
    • Journal of the Korean Chemical Society
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    • v.39 no.3
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    • pp.150-156
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    • 1995
  • Molecular orbital calculations at the ab initio, AM1, and PM3 levels have been carried out to investigate the lactam-lactim tautomerism of 1,2,4-triazolidine-3,5- dione(1) and 1,3,4-oxa(or thia)diazolidine-2,5-dione(2, 3). Most stable tautomer in 1 compound has been calculated to be a dilactam 1a and next one is lactam-lactim 1b. The relative energies between 1a and 1b are 4.1~12.6 kcal/mol depending on computational methods. The optimized 1a structure at ab initio level is in good agreement with X-ray structure. While the stabilities of 2 tautomers are in order of 2a>2b>2c, the stabilities of 3 tautomers are dependent on methods. According to 3-21G basis set, 3a tautomer is more stable by 4.9 kcal/mol over 3b tautomer. In contrast, the heat of formation of 3a at AM1 is higher by 2.71 kcal/mol than 3b.

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Ab initio Calculation for Photochemistry of Psoralens (소랄렌의 광화학 반응에 대한 Ab initio 계산)

  • Kim, Ja-Hong;Kwon, O-Hyung
    • Journal of the Korean Chemical Society
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    • v.53 no.3
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    • pp.244-256
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    • 2009
  • The psoralen-pyrimidine base complexes resulting from interstrand cross-linking through $C_4$-cycloaddition is studied by ab initio and DFT methods. The results indicate that in the case of the molecular complex formation between psoralens and pyrimidine base, the most probable photocycloadditions are 8-MOP< >Thy, Ps< >Cyt and Ps< >Thy. The geometries of photoadducts were optimized at the HF levels and ${\Delta}{G^{\circ}}$ were calculated. The photocycloadduct was inferred to be a C4-cycloaddition product with the stereochemistry of trans-syn 8-MOP< >Thy, trans-anti Ps(3, 4)< >Cyt, trans-anti Ps(12, 13)< >Cyt, trans-syn Ps(3, 4)< >Thy, trans-syn Ps(12, 13)< >Thy, trans-anti Ps(12, 13)< >Ps(12, 13), cis syn, cis anti Thy< >(3, 4)Ps(12, 13)< >Thy.

Comparison of ab initio Effective Valence Shell Hamiltonian with Semiempirical Theories of Valence: Pairing Theorem

  • Sun, Ho-Sung;Kim, Un-Sik;Kim, Yang
    • Bulletin of the Korean Chemical Society
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    • v.6 no.3
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    • pp.168-170
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    • 1985
  • The pairing properties of electronic structure are investigated from ab initioists' point of view. Numerical results of exact ab initio effective valence shell Hamiltonian are compared with simple semiempirical Hamiltonian calculations. In the oxygen atom case it was found that effective three-electron interaction terms break the similarity between electron-states and hole-states. With the trans-butadiene as an example the pairing theorem was studied. Even for alternant hydrocarbons, the deviation from the pairing was found to be enormous. The pairing theorem, which is usually stated for semiempirical Hamiltonians, is not valid when the exact effective Hamiltonian is considered. The present study indicates that comparisons between the pairing theorem of semiempirical methods and ab initio effective Hamiltonian give important information on the accuracy of semiempirical methods.

Effect of Co substitution on NiSi and $NiSi_2$: ab initio calculation (NiSi와 $NiSi_2$에 대한 Co 치환의 영향: ab initio 계산)

  • Kim, Yeong-Cheol;Seo, Hwa-Il
    • Journal of the Semiconductor & Display Technology
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    • v.6 no.3
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    • pp.13-17
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    • 2007
  • Effect of Co substitution on crystal structures of two nickel silicides, NiSi and $NiSi_2$, is investigated by using an ab initio calculation. Relaxed NiSi and $NiSi_2$ structures are calculated and the calculated lattice parameters are in good agreement with experimentally determined lattice parameters within about 2%. A Co atom substitutes a Ni and Si site, respectively, to evaluate the preferable site between them. Co prefers Ni site to Si site in both NiSi and $NiSi_2$. The calculated total energy also indicates that the Co substitution to Ni site stabilizes both the NiSi and $NiSi_2$ structures. Co also prefers Ni site in $NiSi_2$ to that in NiSi, indicating that $NiSi_2$ becomes more stable than NiSi with Co substitution. As Co addition to NiSi improves its thermal stability experimentally, this indicates that the energy barrier between the two phases is high enough to prevent the phase transformation from NiSi to $NiSi_2$ up to high temperature.

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Non-Linear Optical Properties of Polyacetylene Using Ab Initio Time-Dependent Hartree-Fock Theory (폴리 아세틸렌의 비선형 광학성질에 대한 양자 역학적 고찰)

  • Kim, Seung Joon
    • Journal of the Korean Chemical Society
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    • v.40 no.5
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    • pp.317-326
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    • 1996
  • The frequency dependent longitudinal polarizabilities ${\alpha}zz(\omega)$ and the second hyper-polarizabilities ${\gamma}zzzz(\omega)$ of the linear polyenes, $C_4H_6\;to\;C_{30}H_{32}$, have been evaluated using the ab initio time-dependent coupled perturbed Hartree-Fock (TDCPHF) theory with the 6-31G basis set. The ratios of the dynamic properties to the static values have been examined to illustrate the relative dispersion effect and extrapolated to the infinite polymer limit. Also the effect of interchain interaction for linear and nonlinear optical properties has been investigated for $C_4H_6$ and the theoretical discussion has been described to overcome the limitation of ab initio TDHF method in the resonance region.

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Electric Field Dependence Experiments and ab Initio Calculations of Three Cytosine Tautomers in Superfluid Helium Nanodroplets

  • Min, Ah-Reum;Lee, Seung-Jun;Choi, Myong-Yong;Miller, Roger E.
    • Bulletin of the Korean Chemical Society
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    • v.30 no.12
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    • pp.3039-3044
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    • 2009
  • We report the first electric field dependence IR spectra of three cytosine tautomers solvated in helium nanodroplets. By using an electric field dependence on the three lowest energy tautomers of cytosine and ab initio calculations, we are able to measure the vibrational transition moment angles (VTMAs), specifically for the $NH_2$ symmetric stretch (SS) mode in this study, with more precision; thus we have reassigned the previous $NH_2$ (SS) VTMA of 74$^{\circ}$ for the C1 tautomer to 85$^{\circ}$, which the latter is in excellent agreement with the ab initio value. Nonplanarity of the three lowest energy tautomers of cytosine has been investigated by measuring the VTMA of each vibrational mode for the tautomers.

Ab Initio Studies on Proton Affinities of Substituted Furans (치환 퓨란의 양성자 친화도에 대한 Ab Initio 연구)

  • Lee, Gab Yong;Lee, Hyun Mee
    • Journal of the Korean Chemical Society
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    • v.42 no.4
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    • pp.391-397
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    • 1998
  • The geometry of furan, relevant to the binding of bis-furan lexitropsin that contains this ring to the base pair of minor groove of DNA, is optimized by semiempirical (MNDO) and ab initio (Hartree-Fock) methods. The proton affinity and electronic structure are evaluated at the 6-31G and $6-31G^{\ast}$ level of theory for the optimized geometry. The proton affinities are also studied for various substituted furans with the electrondonating and -withdrawing groups to estimate the substituent effect on the proton affinity of furans. It has been found that the electron-donating substituents increase the proton affinity of furan, whereas the electron-withdrawing substituents decrease it. This result can be explained with atomic charge and electron density at oxygen of substituted furans.

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Alloying Effects of BCC-Fe Based Low-Alloy Steel on Mechanical and Thermal Expansion Properties for a Plant Engineering: Ab Initio Calculation (플랜트 엔지니어링을 위한 BCC-Fe 기반 저합금강의 기계적 및 열팽창 특성 합금 효과: Ab Initio 계산)

  • Myungjae Kim;Jongwook Kwak;Jiwoong Kim;Kyung-Nam Kim
    • Korean Journal of Materials Research
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    • v.33 no.10
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    • pp.422-429
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    • 2023
  • High-strength low-alloy steel is one of the widely used materials in onshore and offshore plant engineering. We investigated the alloying effect of solute atoms in α-Fe based alloy using ab initio calculations. Empirical equations were used to establish the effect of alloying on the Vicker's hardness, screw energy coefficient, and edge dislocation energy coefficient of the steel. Screw and edge energy coefficients were improved by the addition of V and Cr solute atoms. In addition, the addition of trace quantities of V, Cr, and Mn enhanced abrasion resistance. Solute atoms and contents with excellent mechanical properties were selected and their thermal conductivity and thermal expansion behavior were investigated. The addition of Cr atom is expected to form alloys with low thermal conductivity and thermal expansion coefficient. This study provides a better understanding of the state-of-the-art research in low-alloy steel and can be used to guide researchers to explore and develop α-Fe based alloys with improved properties, that can be fabricated in smart and cost-effective manners.