• Title/Summary/Keyword: Xylaria grammica

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Taxonomical Characteristics of Xylaria spp. Collected from Malaysia

  • Lee, Yang-Soo;Han, Sang-Sub;Jeong, In-Soo
    • Mycobiology
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    • v.30 no.4
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    • pp.193-196
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    • 2002
  • Five species of the genus Xylaria are recognized on Malaysia materials: X. hypoxylon(L. FR.) Grev, X. allantoidea(Berk.) Fr., X. cubensis(Mont.) Fr., X. curta Fr. and X. grammica(Mont.) Fr.. The collection of Xylaria allantoidea from Malaysia is compared to the collection from Taiwan in morphological characters. The species are described their the host and cultural characteristics by a bright microscope and a scanning electron microscope.

Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound

  • Park, Sook-Young;Jeon, Jongbum;Kim, Jung A;Jeon, Mi Jin;Yu, Nan Hee;Kim, Seulbi;Park, Ae Ran;Kim, Jin-Cheol;Lee, Yerim;Kim, Youngmin;Choi, Eu Ddeum;Jeong, Min-Hye;Lee, Yong-Hwan;Kim, Soonok
    • Mycobiology
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    • v.49 no.3
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    • pp.294-296
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    • 2021
  • An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted.

Optimization of Agrobacterium tumefaciens-Mediated Transformation of Xylaria grammica EL000614, an Endolichenic Fungus Producing Grammicin

  • Jeong, Min-Hye;Kim, Jung A.;Kang, Seogchan;Choi, Eu Ddeum;Kim, Youngmin;Lee, Yerim;Jeon, Mi Jin;Yu, Nan Hee;Park, Ae Ran;Kim, Jin-Cheol;Kim, Soonok;Park, Sook-Young
    • Mycobiology
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    • v.49 no.5
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    • pp.491-497
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    • 2021
  • An endolichenic fungus Xylaria grammica EL000614 produces grammicin, a potent nematicidal pyrone derivative that can serve as a new control option for root-knot nematodes. We optimized an Agrobacterium tumefaciens-mediated transformation (ATMT) protocol for X. grammica to support genetic studies. Transformants were successfully generated after co-cultivation of homogenized young mycelia of X. grammica with A. tumefaciens strain AGL-1 carrying a binary vector that contains the bacterial hygromycin B phosphotransferase (hph) gene and the eGFP gene in T-DNA. The resulting transformants were mitotically stable, and PCR analysis showed the integratin of both genes in the genome of transformants. Expression of eGFP was confirmed via fluorescence microscopy. Southern analysis showed that 131 (78.9%) out of 166 transformants contained a single T-DNA insertion. Crucial factors for producing predominantly single T-DNA transformants include 48 h of co-cultivation, pretreatment of A. tumefaciens cells with acetosyringone before co-cultivation, and using freshly prepared mycelia. The established ATMT protocol offers an efficient tool for random insertional mutagenesis and gene transfer in studying the biology and ecology of X. grammica.