• Title/Summary/Keyword: X-gal

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GALOIS GROUPS OF MODULES AND INVERSE POLYNOMIAL MODULES

  • Park, Sang-Won;Jeong, Jin-Sun
    • Bulletin of the Korean Mathematical Society
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    • v.44 no.2
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    • pp.225-231
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    • 2007
  • Given an injective envelope E of a left R-module M, there is an associative Galois group Gal$({\phi})$. Let R be a left noetherian ring and E be an injective envelope of M, then there is an injective envelope $E[x^{-1}]$ of an inverse polynomial module $M[x^{-1}]$ as a left R[x]-module and we can define an associative Galois group Gal$({\phi}[x^{-1}])$. In this paper we describe the relations between Gal$({\phi})$ and Gal$({\phi}[x^{-1}])$. Then we extend the Galois group of inverse polynomial module and can get Gal$({\phi}[x^{-s}])$, where S is a submonoid of $\mathbb{N}$ (the set of all natural numbers).

An Approach for Lactulose Production Using the CotX-Mediated Spore-Displayed β-Galactosidase as a Biocatalyst

  • Wang, He;Yang, Ruijin;Hua, Xiao;Zhang, Wenbin;Zhao, Wei
    • Journal of Microbiology and Biotechnology
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    • v.26 no.7
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    • pp.1267-1277
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    • 2016
  • Currently, enzymatic synthesis of lactulose, a synthetic prebiotic disaccharide, is commonly performed with glycosyl hydrolases. In this work, a new type of lactulose-producing biocatalyst was developed by displaying β-galactosidase from Bacillus stearothermophilus IAM11001 (Bs-β-Gal) on the surface of Bacillus subtilis 168 spores. Localization of β-Gal on the spore surface as a fusion to CotX was verified by western blot analysis, immunofluorescence microscopy, and flow cytometry. The optimum pH and temperature for the resulting spore-displayed β-Gal was 6.0 and 75℃, respectively. Under optimal conditions, it showed maximum activity of 0.42 U/mg spores (dry weight). Moreover, the spore-displayed CotX-β-Gal was employed as a whole cell biocatalyst to produce lactulose, yielding 8.8 g/l from 200 g/l lactose and 100 g/l fructose. Reusability tests showed that the spore-displayed CotX-β-Gal retained around 30.3% of its initial activity after eight successive conversion cycles. These results suggest that the CotX-mediated spore-displayed β-Gal may provide a promising strategy for lactulose production.

Detection of Bifidobacteria by ${\alpha}-Galactosidase$ activity (${\alpha}-Galactosidase$의 활력차이에 의한 Bifidobacteria의 선별)

  • Min, Hae-Ki;Lee, See-Kyung;Kang, Kook-Hee
    • Applied Biological Chemistry
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    • v.36 no.3
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    • pp.191-196
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    • 1993
  • This method using the synthesis substrate of $5-bromo-4-chloro-3-indolyl-{\alpha}-galactoside\;(X-{\alpha}-Gal)$ was examined for the differential enumeration of Bifidobacteria and lactic acid-producing bacteria. Bifidobacteria possess a high level of ${\alpha}-galactosidase$ activity. Bifidobacterium longum KCTC 3215 exhibited the highest ${\alpha}-galactosidase$ specific activity (8.57 units/mg protein). Determination of ${\alpha}-galactosidase$ activity using the PNPG procedure showed that Lactobacillus, Streptococcus, Pediococcus, and Leuconostoc strain had lower ${\alpha}-galactosidase$ activity as compared to Bifidobacteria. The $X-{\alpha}-Gal$ based medium is useful to identify Bifidobacteria among lactic acid-producing bacteria since the enzyme action of ${\alpha}-galactosidase$ spills $X-{\alpha}-Gal$ substrate and releases indol which impacts a blue color to Bifidobacterial colonies on agar plates. All strains of Bifidobacteria appeared as blue colonies on MRS agar medium supplemented with $100\;{\mu}M\;X-{\alpha}-Gal$ while colonies of other lactic acid-producing bacteria appeared white or light blue.

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GALOIS GROUP OF GENERALIZED INVERSE POLYNOMIAL MODULES

  • Park, Sang-Won;Jeong, Jin-Sun
    • East Asian mathematical journal
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    • v.24 no.2
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    • pp.139-144
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    • 2008
  • Given an injective envelope E of a left R-module M, there is an associative Galois group Gal($\phi$). Let R be a left noetherian ring and E be an injective envelope of M, then there is an injective envelope E[$x^{-1}$] of an inverse polynomial module M[$x^{-1}$] as a left R[x]-module and we can define an associative Galois group Gal(${\phi}[x^{-1}]$). In this paper we extend the Galois group of inverse polynomial module and can get Gal(${\phi}[x^{-s}]$), where S is a submonoid of $\mathds{N}$ (the set of all natural numbers).

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Cloning and Expression of the UDP-Galactose-4-Epimerase Gene (galE) Constituting the gal/lac Operon of Lactococcus lactis ssp. lactis ATCC7962

  • Lee, Jung-Min, Choi, Jae-Yeon;Lee, Jong-Hoon;Chang, Hae-Choon;Chung, Dae-Kyun;Kim, Jeong-Hwan;Lee, Hyong-Joo
    • Journal of Microbiology and Biotechnology
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    • v.9 no.4
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    • pp.393-397
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    • 1999
  • The gene (galE) encoding UDP-galactose-4-epimerase, operative in the galactose metabolic pathway, was cloned together with the $\beta$-galactosidase gene (lacZ) from Lactococcus lactis ssp. lactis ATCC7962 (L. lactis 7962). galE was found to have a length of 981 bps and encoded a protein with a molecular mass of 36,209 Da. The deduced amino acid sequence showed a homology with GalE proteins from several other microorganisms. A Northern analysis demonstrated that galE was constitutively expressed by its own promoter. When galactose or lactose was added into medium, the galE transcription was induced by several upstream promoters. The structure of the gal/lac operon of L. lactis 7962 was partially characterized and the gene order around galE was galT-lacA-lacZ-galE-orfX.

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Molecular Simulations and Conformational Studies of Fucoseα1-3)Gal(β1-X)GlcNAc where X=3, 4, or 6 Oligosaccharides

  • Yoo, Eun-Sun;Yoon, In-Mo
    • Bulletin of the Korean Chemical Society
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    • v.29 no.9
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    • pp.1755-1760
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    • 2008
  • Energy minimization and conformational studies of molecular ions generated by ESI (electrospray ionization) tandem mass spectrometry (MS/MS) can be used for the discrimination of stereoisomeric permethylated and sodium cationized trisaccharides. Sets of fucose-containing trisaccharides having different internal and terminal linkages have been synthesized to analyze the reducing terminal linkage positions using BT and IT fusion approaches. A detailed investigation has been undertaken on the conformational behaviors of four trisaccharide fragments from human milk and blood group determinants of Type 1 and Type 2, namely Fuc($\alpha$1- 3)Gal($\beta$1-3)GalNAc and Fuc($\alpha$1-3)Gal($\beta$1-X)GlcNAc where X = 3, 4 and 6 using molecular modeling methods. Three dimensional rigid and adiabatic phi-psi-energy maps (Surfer program) describing the energy as a function of rotation around corresponding glycosidic linkages were calculated by SYBYL molecular modeling and MM4 force field programs conjunction with cleavage energies of ESI MS/MS for the side group orientations. This approach predicted conformational behaviors exhibited by isomer saccharides for future applications on biologically active glycoconjugates and to exploit a faster method of synthesizing a series of structural isomeric oligosaccharides.

Characterization of the active site and coenzyme binding pocket of the monomeric UDP- galactose 4'- epimerase of Aeromonas hydrophila

  • Agarwal, Shivani;Mishra, Neeraj;Agarwal, Shivangi;Dixit, Aparna
    • BMB Reports
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    • v.43 no.6
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    • pp.419-426
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    • 2010
  • Aeromonas hydrophila is a bacterial pathogen that infects a large number of eukaryotes, including humans. The UDP-galactose 4'-epimerase (GalE) catalyzes interconversion of UDP-galactose to UDP-glucose and plays a key role in lipopolysaccharide biosynthesis. This makes it an important virulence determinant, and therefore a potential drug target. Our earlier studies revealed that unlike other GalEs, GalE of A. hydrophila exists as a monomer. This uniqueness necessitated elucidation of its structure and active site. Chemical modification of the 6xHis-rGalE demonstrated the role of histidine residue in catalysis and that it did not constitute the substrate binding pocket. Loss of the 6xHis-rGalE activity and coenzyme fluorescence with thiol modifying reagents established the role of two distinct vicinal thiols in catalysis. Chemical modification studies revealed arginine to be essential for catalysis. Site-directed mutagenesis indicated Tyr149 and Lys153 to be involved in catalysis. Use of glycerol as a cosolvent enhanced the GalE thermostability significantly.

A Short Communication on Sequential and Structural Information's of Human Galanin Receptors using in Silico Methods

  • Kothandan, Gugan
    • Journal of Integrative Natural Science
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    • v.5 no.3
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    • pp.168-174
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    • 2012
  • Gal (1-3) receptors are members of GPCR superfamily with seven transmembrane helices. The neuropeptide galanin mediates its effects through the receptor subtypes Gal1, Gal2, and Gal3 and has been implicated in anxiety and depression related behaviors. Galanin receptors are considered to be important targets for the development of novel antidepressant drugs. Owing to the importance of these receptors, a short communication about the sequential and structural studies about the functional Galanin (1-3) receptors has been reported. Structural studies have been hampered due to the lack of X-ray crystal structures. However with the availability of templates with close homologs comparative modeling could be encouraging. Sequence analysis was done for each receptors and homology modeling of each receptors were done with recently reported templates. Comparative analyses were done between these receptors to identify the relationships between them sequentially. Phylogram was generated between these receptors to identify the close homologue between this receptor and found that Gal2 and Gal3 receptors are closer. Our results could be useful for further structure based drug design targeting Gal1, Gal2 and Gal3 receptors.

Novel Variable Step-Size Gradient Adaptive Lattice Algorithm for Active Noise Control (능동 소음 제어를 위한 새로운 가변 수렴 상수 Gradient Adaptive Lattice Algorithm)

  • Lee, Keunsang;Kim, Seong-Woo;Im, Jaepoong;Seo, Young-Soo;Park, Youngcheol
    • The Journal of the Acoustical Society of Korea
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    • v.33 no.5
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    • pp.309-315
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    • 2014
  • In this paper, a novel variable step-size filtered-x gradient adaptive lattice (NVSS-FxGAL) algorithm for active noise control system is proposed. The gradient adaptive lattice (GAL) algorithm is capable of controlling the narrow band noise effectively. The GAL algorithm can achieve both fast convergence rate and low steady-state level using the variable step-size. However, it suffers from the convergence performance for varying signal characteristic since the global variable step-size is equally applied to all lattice stages. Therefore, the proposed algorithm guarantees the stable and consistency convergence performance by using the local variable step-size for the suitable each lattice stage. Simulation results confirm that the proposed algorithm can obtain the fast convergence rate and low steady-state level compared to the conventional algorithms.

Surface Photovoltage Characteristics of ${In_{0.5}}({Ga_{1-x}}{Al_x})_{0.5}P$/GaAs Double Heterostructures (${In_{0.5}}({Ga_{1-x}}{Al_x})_{0.5}P$/GaAs 이중 이종접합 구조에 대한 표면 광전압 특성)

  • Kim, Ki-Hong;Choi, Sang-Soo;Bae, In-Ho;Kim, I n-Soo;Park, Sung-Bae
    • Korean Journal of Materials Research
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    • v.11 no.8
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    • pp.655-660
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    • 2001
  • Surface photovoltage spectroscopy was used to study $In_{0.5}(Ga_{1-x}Al_x)_{0.5}P/GaAs$ grown by metalorganic chemical vapor deposition(MOCVD). Energy gap related transition in GaAs and $In_{0.5}(Ga_{1-x}Al_x)_{0.5}P$ were observed. By measuring the frequency dependence of $In_{0.5}(Ga_{1-x}Al_x)_{0.5}P/GaAs$, we observed that SPV line shape does not chance, whereas the amplitude change. This results is due to the difference in the lifetimes of the photocarriers in GaAs and in $In_{0.5}(Ga_{1-x}Al_x)_{0.5}P$. We also have evaluated the parameters that describe the temperature dependences of the band gap.

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