• 제목/요약/키워드: Wild yeast

검색결과 282건 처리시간 0.03초

The Role of Residues 103, 104, and 278 in the Activity of SMG1 Lipase from Malassezia globosa: A Site-Directed Mutagenesis Study

  • Lan, Dongming;Wang, Qian;Popowicz, Grzegorz Maria;Yang, Bo;Tang, Qingyun;Wang, Yonghua
    • Journal of Microbiology and Biotechnology
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    • 제25권11호
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    • pp.1827-1834
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    • 2015
  • The SMG1 lipase from Malassezia globosa is a newly found mono- and diacylglycerol (DAG) lipase that has a unique lid in the loop conformation that differs from the common alpha-helix lid. In the present study, we characterized the contribution of three residues, L103 and F104 in the lid and F278 in the rim of the binding site groove, on the function of SMG1 lipase. Site-directed mutagenesis was conducted at these sites, and each of the mutants was expressed in the yeast Pichia pastoris, purified, and characterized for their activity toward DAG and p-nitrophenol (pNP) ester. Compared with wild-type SMG1, F278A retained approximately 78% of its activity toward DAG, but only 11% activity toward pNP octanoate (pNP-C8). L103G increased its activity on pNP-C8 by approximately 2-fold, whereas F104G showed an approximate 40% decrease in pNP-C8 activity, and they both showed decreased activity on the DAG emulsion. The deletion of 103-104 retained approximately 30% of its activity toward the DAG emulsion, with an almost complete loss of pNP-C8 activity. The deletion of 103-104 showed a weaker penetration ability to a soybean phosphocholine monolayer than wild-type SMG1. Based on the modulation of the specificity and activity observed, a pNP-C8 binding model for the ester (pNP-C8, N102, and F278 form a flexible bridge) and a specific lipid-anchoring mechanism for DAG (L103 and F104 serve as "anchors" to the lipid interface) were proposed.

AbSte7, a MAPKK Gene of Alternaria brassicicola, Is Involved in Conidiation, Salt/Oxidative Stress, and Pathogenicity

  • Xu, Houjuan;Zhang, Qianqian;Cui, Wenjuan;Zhang, Xiaofei;Liu, Weiyang;Zhang, Li;Islam, Md. Nurul;Baek, Kwang-Hyun;Wang, Yujun
    • Journal of Microbiology and Biotechnology
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    • 제26권7호
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    • pp.1311-1319
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    • 2016
  • Alternaria brassicicola (Schwein.) invades Brassicaceae and causes black spot disease, significantly lowering productivity. Mitogen-activated protein kinases (MAPKs) and their upstream kinases, including MAPK kinases (MAPKKs) and MAPKK kinases (MAPKKK), comprise one of the most important signaling pathways determining the pathogenicity of diverse plant pathogens. The AbSte7 gene in the genome of A. brassicicola was predicted to be a homolog of yeast Ste7, a MAPKK; therefore, the function was characterized by generating null mutant strains with a gene replacement method. AbSte7 replacement mutants (RMs) had a slower growth rate and altered colony morphology compared with the wild-type strain. Disruption of the AbSte7 gene resulted in defects in conidiation and melanin accumulation. AbSte7 was also involved in the resistance pathways in salt and oxidative stress, working to negatively regulate salt tolerance and positively regulate oxidative stress. Pathogenicity assays revealed that AbSte7 RMs could not infect intact cabbage leaves, but only formed very small lesions in wounded leaves, whereas typical lesions appeared on both intact and wounded leaves inoculated with the wild-type strain. As the first studied MAPKK in A. brassicicola, these data strongly suggest that the AbSte7 gene is an essential element for the growth, development, and pathogenicity of A. brassicicola.

The Ring-H2 Finger Motif of CKBBP1/SAG Is Necessary for Interaction with Protein Kinase CKII and Optimal Cell Proliferation

  • Kim, Yun-Sook;Ha, Kwon-Soo;Kim, Young-Ho;Bae, Young-Seuk
    • BMB Reports
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    • 제35권6호
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    • pp.629-636
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    • 2002
  • Protein kinase CKII (CKII) is required for progression through the cell division cycle. We recently reported that the $\beta$ subunit of protein kinase CKII ($CKII{\beta}$) associates with CKBBP1 that contains the Ring-H2 finger motif in the yeast two-hybrid system. We demonstrate here that the Ring-H2 finger-disrupted mutant of CKBBP1 does not interact with purified $CKII{\beta}$ in vitro, which shows that the Ring-H2 finger motif is critical for direct interaction with $CKII{\beta}$. The CKII holoenzyme is efficiently co-precipitated with the wild-type CKBBP1, but not with the Ring-H2 finger-disrupted CKBBP1, from whole cell extracts when epitope-tagged CKBBP1 is transiently expressed in HeLa cells. Disruption of the Ring-H2 finger motif does not affect the cellular localization of CKBBP1 in HeLa cells. The increased expression of either the wild-type CKBBP1 or Ring-H2 finger-disrupted CKBBP1 does not modulate the protein or the activity levels of CKII in HeLa cells. However, the stable expression of Ring-H2 finger-disrupted CKBBP1 in HeLa cells suppresses cell proliferation and causes the accumulation of the G1/G0 peak of the cell cycle. The Ring-H2 finger motif is required for maximal CKBBP1 phosphorylation by CKII, suggesting that the stable binding of CKBBP1 to CKII is necessary for its efficient phosphorylation. Taken together, these results suggest that the complex formation of $CKII{\beta}$ with CKBBP1 and/or CKII-mediated CKBBP1 phosphorylation is important for the G1/S phase transition of the cell cycle.

분열형 효모에서 유전자 결실에 의해 알킬화제와 3-AMINOBENZAMIDE에 저항성을 나타내는 새로운 유전자의 특성 분석 (Characterization of a New Gene Resistant to Alkylating Agents and 3-Aminobenzamide When Knocked Out in Fission Yeast)

  • 박종군;차재영;황성진;박세근;김미영;백성민;최인순;이정섭
    • 생명과학회지
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    • 제12권2호
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    • pp.219-225
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    • 2002
  • 진핵세포의 염색체는 전사, 복제, 회복 등의 과정에서 관여하는 단백질의 기능으로 구조가 변하게 된다. 이때 관여하는 단백질은 DNA-단백질의 상호작용에 의해서 이루어지게 되는데, 이때 단백질의 일부분은 일정한 상동성이 존재하게 된다. 이러한 부분은 motif나 domain으로 구성되는데, 예를 들면, SAP domain등을 들 수 있다. S. pombe genomic DNA 데이터베이스를 검색하여 Arabidopsis PARP 과 KU70과 상동성을 보이는 새로운 유전자를 찾았다. 이를 SAPuvs (SAP UV Sensitive)라 명명하였으며, Ura4를 선별표지로 이용하여 S. pombe SAPuvs 유전자 결실세포를 구성하였다. SAPuvs 유전자 결실세포는 자외선 조사 실험에서 정상의 세포에 비해 현저하게 죽었다. 그러나, MMS 또는 MMS와 3AB의 처리 실험에서는 저항성을 보였다. 이러한 결과로 SAPuvs는 DNA 상해회복에서 염색사구조 형성에 연관되어 있음을 확인하였다.

Lipid and Citric Acid Production by Wild Yeasts Grown in Glycerol

  • Souza, Karla Silva Teixeira;Schwan, Rosane Freitas;Dias, Disney Ribeiro
    • Journal of Microbiology and Biotechnology
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    • 제24권4호
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    • pp.497-506
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    • 2014
  • In this study, crude glycerol was used as a carbon source in the cultivation of wild yeasts, aiming at the production of microbial lipids and citric acid. Forty yeasts of different sources were tested concerning their growth in crude and commercial glycerol. Four yeasts (Lindnera saturnus UFLA CES-Y677, Yarrowia lipolytica UFLA CM-Y9.4, Rhodotorula glutinis NCYC 2439, and Cryptococcus curvatus NCYC 476) were then selected owing to their ability to grow in pure ($OD_{600}$ 2.133, 1.633, 2.055, and 2.049, respectively) and crude ($OD_{600}$ 2.354, 1.753, 2.316, and 2.281, respectively) glycerol (10%, 20%, and 30%). Y. lipolytica UFLA CM-Y9.4 was selected for its ability to maintain cell viability in concentrations of 30% of crude glycerol, and high glycerol intake (18.907 g/l). This yeast was submitted to lipid production in 30 g/l of crude glycerol, and therefore obtained 63.4% of microbial lipids. In the fatty acid profile, there was a predominance of stearic (C18:0) and palmitic (C16:0) acids in the concentrations of 87.64% and 74.67%, respectively. We also performed optimization of the parameters for the production of citric acid, which yielded a production of 0.19 g/l of citric acid in optimum conditions (38.4 g/l of crude glycerol, agitation of 184 rpm, and temperature of $30^{\circ}C$). Yarrowia lipolytica UFLA CM-Y9.4 presented good lipid production when in the concentration of 30 g/l of glycerol. These data may be used for production in large quantities for the application of industrial biodiesel.

효모에서 SHC1 유전자의 이온 농도 조절에 의한 세포내 pH 항상성 유지 (Regulation of Intracellular pH by SHC1 in Saccharomyces cerevisiae)

  • 하승길;전준철;최의열
    • 미생물학회지
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    • 제38권3호
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    • pp.168-172
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    • 2002
  • 출아효모는 주변 환경 pH의 커다란 변화 속에서 적응할 수 있는 효과적인 체계를 지니고 있으며 SHC1 유전자는 알칼리 pH 조건에서 세포의 성장에 필요한 유전자 중에 하나임을 확인하였다. SHC1 유전자의 세포내 pH 조절 기작을 보다 구체적으로 알아보기 위하여 이 유전자가 소실된 돌연변이주를 제조하였다. 성장률의 차이가 나타나는 원인을 세포 내부의 pH 완충능력 결여에 의한 것으로 추측하고 pH 감수성 형광물질인 C.SNARE를 사용하여 외부 pH의 변화에 따른 세포 내부의 pH를 측정하였다. 알칼리 pH 완충효과는 소실 돌연변이의 경우는 야생종 대비 70% 수준을 보였다. 또한 pH 조절에 관여하는 효모세포 내부의 $Na^{+}$$K^{+}$의 농도를 원자흡광계를 사용하여 조사한 바, $K^{+}$ 이온의 경우에는 돌연변이주에 비하여 야생형 세포내에 더 많이 존재하는 것으로 나타났으나 $Na^{+}$ 이온의 경우는 별다른 차이점을 보이지 않았다. 이러한 결과는 $K^{+}$ 이온의 조절이 효모에서 세포내 pH조절 기작에 중요하며 SHC1 유전자는 이 $K^{+}$ 이온의 세포내 농도 유지에 관여하고 있다는 것을 제시해 주었다.

Role of Citrate Synthase in Acetate Utilization and Protection from Stress-Induced Apoptosis

  • Lee, Yong-Joo;Kang, Hong-Yong;Maeng, Pil Jae
    • 한국미생물학회:학술대회논문집
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    • 한국미생물학회 2008년도 International Meeting of the Microbiological Society of Korea
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    • pp.39-41
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    • 2008
  • The yeast Saccharomyces cerevisiae has been shown to contain three isoforms of citrate synthase (CS). The mitochondrial CS, Cit1, catalyzes the first reaction of the TCA cycle, i.e., condensation of acetyl-CoA and oxaloacetate to form citrate [1]. The peroxisomal CS, Cit2, participates in the glyoxylate cycle [2]. The third CS is a minor mitochondrial isofunctional enzyme, Cit3, and related to glycerol metabolism. However, the level of its intracellular activity is low and insufficient for metabolic needs of cells [3]. It has been reported that ${\Delta}cit1$ strain is not able to grow with acetate as a sole carbon source on either rich or minimal medium and that it shows a lag in attaining parental growth rates on nonfermentable carbon sources [2, 4, 5]. Cells of ${\Delta}cit2$, on the other hand, have similar growth phenotype as wild-type on various carbon sources. Thus, the biochemical basis of carbon metabolism in the yeast cells with deletion of CIT1 or CIT2 gene has not been clearly addressed yet. In the present study, we focused our efforts on understanding the function of Cit2 in utilizing $C_2$ carbon sources and then found that ${\Delta}cit1$ cells can grow on minimal medium containing $C_2$ carbon sources, such as acetate. We also analyzed that the characteristics of mutant strains defective in each of the genes encoding the enzymes involved in TCA and glyoxylate cycles and membrane carriers for metabolite transport. Our results suggest that citrate produced by peroxisomal CS can be utilized via glyoxylate cycle, and moreover that the glyoxylate cycle by itself functions as a fully competent metabolic pathway for acetate utilization in S. cerevisiae. We also studied the relationship between Cit1 and apoptosis in S. cerevisiae [6]. In multicellular organisms, apoptosis is a highly regulated process of cell death that allows a cell to self-degrade in order for the body to eliminate potentially threatening or undesired cells, and thus is a crucial event for common defense mechanisms and in development [7]. The process of cellular suicide is also present in unicellular organisms such as yeast Saccharomyces cerevisiae [8]. When unicellular organisms are exposed to harsh conditions, apoptosis may serve as a defense mechanism for the preservation of cell populations through the sacrifice of some members of a population to promote the survival of others [9]. Apoptosis in S. cerevisiae shows some typical features of mammalian apoptosis such as flipping of phosphatidylserine, membrane blebbing, chromatin condensation and margination, and DNA cleavage [10]. Yeast cells with ${\Delta}cit1$ deletion showed a temperature-sensitive growth phenotype, and displayed a rapid loss in viability associated with typical apoptotic hallmarks, i.e., ROS accumulation, nuclear fragmentation, DNA breakage, and phosphatidylserine translocation, when exposed to heat stress. Upon long-term cultivation, ${\Delta}cit1$ cells showed increased potentials for both aging-induced apoptosis and adaptive regrowth. Activation of the metacaspase Yca1 was detected during heat- or aging-induced apoptosis in ${\Delta}cit1$ cells, and accordingly, deletion of YCA1 suppressed the apoptotic phenotype caused by ${\Delta}cit1$ mutation. Cells with ${\Delta}cit1$ deletion showed higher tendency toward glutathione (GSH) depletion and subsequent ROS accumulation than the wild-type, which was rescued by exogenous GSH, glutamate, or glutathione disulfide (GSSG). Beside Cit1, other enzymes of TCA cycle and glutamate dehydrogenases (GDHs) were found to be involved in stress-induced apoptosis. Deletion of the genes encoding the TCA cycle enzymes and one of the three GDHs, Gdh3, caused increased sensitivity to heat stress. These results lead us to conclude that GSH deficiency in ${\Delta}cit1$ cells is caused by an insufficient supply of glutamate necessary for biosynthesis of GSH rather than the depletion of reducing power required for reduction of GSSG to GSH.

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Ferritin 유전자 전이 효모(Saccharomyces serevisiae)의 급여가 닭의 생산성, 장기 및 계란의 철분함량에 미치는 영향 (Effects of Feeding Ferritin Gene Transferred Yeast (Saccharomyces serevisiae) on Performance, Iron Concentration in Organs and Egg of Chickens)

  • 유병선;박재홍;김대혁;류경선
    • 한국가금학회지
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    • 제30권4호
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    • pp.245-251
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    • 2003
  • Ferritin 유전자 이식 효모 (FRT, Saccharomyces cerevisiae)를 생균제로 급여시에 육계와 산란계의 생산성과 장기 및 난황의 철분 함량에 미치는 영향을 구명하기 위하여 3회의 사양실험을 실시하였다. FRT의 급여효과는 일반 효모 (W0)와 20mM의 구연산 철을 첨가한 배지에서 배양한 효모(W20)의 급여시와 비교하였다. 실험 1에서는 철분을 첨가급여구(75mg/kg; Fe75), 무첨가구 (Fe0) 효모의 급여(무첨가, W0, FRT)가 육계의 생산성과 장기의 철분함량에 미치는 영향을 구명하기 위하여 1일령 육계 수컷 420수를 이용하여 5주간 사양실험을 실시하였다. 매주 증체량과 사료섭취량, 사료요구율을 측정하였다. 실험 2에서는 33주령 이사브라운 산란계 15수를 산란케이지에 개체수용하여 대조구와 W0, FRT 사료를 3주간 급여하였다. 실험 3은 45주령 이사브라운 산란계 24수를 산란케이지에 개체수용하여 1주간 기초사료를 급여한 뒤 시험사료(대조구, W0, W20, FRT)를 3주간 급여하였다. 모든 실험의 종료시 간과 심장, 비장, 경골의 철분함량을 측정하였으며 주간별로 난황의 철분함량을 측정하였으며 주간별로 난황의 철분함량을 측정하였다.(Expt 2, 3) 실험 1과 2에서 효모의 급여량은 사료에 $1{\times}10^8$cfu/kg이었으며 철분함량은 세포 건물기준 500mg/kg이었다. 실험 3에서는 사료에 $2{\times}10^{10}$cfu/kg을 첨가하였으며 철분함량은 1000mg/kg이었다. 실험 1에서 Fe75의 급여는 Fe0에 비해 증체량이 현저히 증가하였다.(P<0.05). 실험 3에서 FRT의 급여는 간과 비장의 철분함량을 증가시키는 경향을 보였으나 경골의 철분함량은 감소하는 경향을 보였다. 이상의 결과에서 FRT의 급여는 생균제로서 육계와 산란계의 생산성과 장기의 철분함량을 개선하지 못하였다.

Genome-wide Drug-induced Haploinsufficiency Screening of Fission Yeast for Identification of Hydrazinocurcumin Targets

  • Baek, Seung-Tae;Kim, Dong-Uk;Han, Sang-Jo;Woo, Im-Sun;Nam, Mi-Young;Kim, Li-La;Heo, Kyung-Sun;Lee, Hye-Mi;Hwang, Hye-Rim;Choi, Shin-Jung;Won, Mi-Sun;Lee, Min-Ho;Park, Song-Kyu;Lee, Sung-Hou;Kwon, Ho-Jeong;Maeng, Pil-Jae;Park, Hee-Moon;Park, Young-Woo;Kim, Dong-Sup;Hoe, Kwang-Lae
    • Journal of Microbiology and Biotechnology
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    • 제18권2호
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    • pp.263-269
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    • 2008
  • Hydrazinocurcumin (HC), a synthetic derivative of curcumin, has been reported to inhibit angiogenesis via unknown mechanisms. Understanding the molecular mechanisms of the drug's action is important for the development of improved compounds with better pharmacological properties. A genome-wide drug-induced haploinsufficiency screening of fission yeast gene deletion mutants has been applied to identify drug targets of HC. As a first step, the 50% inhibition concentration $(IC_{50})$ of HC was determined to be $2.2{\mu}M$. The initial screening of 4,158 mutants in 384-well plates using robotics was performed at concentrations of 2, 3, and $4{\mu}M$. A second screening was performed to detect sensitivity to HC on the plates. The first screening revealed 178 candidates, and the second screening resulted in 13 candidates, following the elimination of 165 false positives. Final filtering of the condition-dependent haploinsufficient genes gave eight target genes. Analysis of the specific targets of HC has shown that they are related to septum formation and the general transcription processes, which may be related to histone acetyltransferase. The target mutants showed 65% growth inhibition in response to HC compared with wild-type controls, as shown by liquid culture assay.

몇가지 효모(酵母)의 산(酸) 및 알콜생성(生成)에 미치는 발효조건(醱酵條件)의 영향(影響) (The Influence of Fermentation Conditions on the Formation of Acid and Alcohol by Some Yeast Strains)

  • 박윤중;손천배
    • 농업과학연구
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    • 제4권2호
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    • pp.173-177
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    • 1977
  • 3종(種)의 효모(酵母)를 시험균주(試驗菌株)로 사용(使用)하여 효모(酵母)의 산(酸) 및 알콜생성(生成)에 미치는 발효조건(醱酵條件)의 영향(影響)을 검토(檢討)하였다. 시험결과(試驗結果)는 다음과 같다. 1. 3균주(菌株)는 모두 혐기적조건(嫌氣的條件)에서보다 배지면(培地面)에 공기(空氣)가 닿아있는 호기적조건(好氣的條件)에서 산성성(酸性成)과 알콜생성(生成)($CO_2$ 발생(發生))이 많았다. 2. 반합성배지(半合成培地)의 경우에 비(比)하여 료배지에서는 산(酸)과 알콜의 생성(生成)이 속(速)히 이루어졌으며 최고치(最高値)에 이르는 시간(時間)이 짧았다. 3. 료배지의 경우에는 혐기적(嫌氣的) 또는 호기적(好氣的)의 어느 조건(條件)에서도 산성성량(酸性成量)의 순위(順位)는 No. 239>No.7>No.47로 되었으며 알콜생성량(生成量)의 순위(順位)는 No. 47>No. 239>No. 7로 되었다. 4. No. 239균(菌)은 산화능(酸化能)이 강(强)할 뿐만 아니라 발효능(醱酵能)도 상당(相當)히 강(强)하므로 다산성(多酸性)의 양조주제조(釀造酒製造)에 이용(利用)할 수 있다고 생각된다.

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