• Title/Summary/Keyword: Vector analysis

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Tumor Surpressor Gene Therany, and Natural Product with Vectors[Aoenouirus, Aoenn associated virus] in Human Papilloma virus (HPV[Human papilloma virus]유래 바이러스 벡터[Adenovirus, Adeno associated virus]를 이용한 암 억제유전자치료법과 자연산물에서의 암 억제 효과)

  • 천병수;노민석;유종수;김준명
    • KSBB Journal
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    • v.16 no.6
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    • pp.579-591
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    • 2001
  • The cell growth inhibitor effect of cervical cancer cells was investigated by liposome mediated transfection (pRcCMVp53/lipofectin) and by transfection using adenovirus (AdCMVp57). The papilloma virus cancer cell lines we used in this study were HPV16 positive, having inhibiter gene, wild p53 gene, CaSki, SiHa, HPV18 positive HeLa, HeLaS3 and HPV negative C33A, HT3. LacZ gene of E.coli was used as the marker gene for the transfection efficiency. The effect on the inhibition of tumor cell growth was measured by cell count and cell viability though ELISA analysis and MTT assay. The inhibition of tumor cell growth was confirmed by measuring each assay for six days, comparing with the normal control cell growth. The cell growth of cervical cancer calls by transfection was significantly reduced and showed tittle differences among the cell lines. To eliminate the potential problem of Ad(adenovirus) contamination during rAAV production, rAAV can be produced by a triple transfection of vector plasmic, packaging plasmid, and adenovirus helper plasmid. To examine the helper functions of Ad plasmids on the production of rAAV vector, we carried out cotransfection of three plasmids, AAV vector, packaging construct, and Ad helper plasmids. The optimized transfection condition for calcium phosphate method is 25ug of total DNA per 10-cm-diameter plate of 293 cell. We found that rAAV yields peaked at 48hr after Ad infection. The titer of rAAV was measured by the dot blot analysis to measure the number of particles/ml based on the quantification of viral DNA. Recent1y, Kombucha(fungi) was identified as a very potent antileukefic agent. In the present study, effect of natural toxin(plankton) and Kombucha is PSP(GTXI-3, neoSTX), on various MTT assay cervical cancer cell line. Toxin(GTX 1-3, neoSTX) also inhibited the proliferation in primary cervical cancer calls in a dose-dependent toxin concentration. These results showed that toxin was very potent in inhibiting the proliferation of cervical cancer calls in vitro. Toxins and Kombuoha exhibited a dose dependent inhibition of cellular proliferation in cancer cell line.

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Classification of Consonants by SOM and LVQ (SOM과 LVQ에 의한 자음의 분류)

  • Lee, Chai-Bong;Lee, Chang-Young
    • The Journal of the Korea institute of electronic communication sciences
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    • v.6 no.1
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    • pp.34-42
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    • 2011
  • In an effort to the practical realization of phonetic typewriter, we concentrate on the classification of consonants in this paper. Since many of consonants do not show periodic behavior in time domain and thus the validity for Fourier analysis of them are not convincing, vector quantization (VQ) via LBG clustering is first performed to check if the feature vectors of MFCC and LPCC are ever meaningful for consonants. Experimental results of VQ showed that it's not easy to draw a clear-cut conclusion as to the validity of Fourier analysis for consonants. For classification purpose, two kinds of neural networks are employed in our study: self organizing map (SOM) and learning vector quantization (LVQ). Results from SOM revealed that some pairs of phonemes are not resolved. Though LVQ is free from this difficulty inherently, the classification accuracy was found to be low. This suggests that, as long as consonant classification by LVQ is concerned, other types of feature vectors than MFCC should be deployed in parallel. However, the combination of MFCC/LVQ was not found to be inferior to the classification of phonemes by language-moded based approach. In all of our work, LPCC worked worse than MFCC.

Analysis of W-CDMA System with Smart Antenna for Different Bandwidths in Wideband Multipath Channel (광대역 다중경로 채널에서 스마트 안테나를 적용한 W-CDMA 시스템의 대역폭에 따른 성능분석)

  • 전준수;이주석 ;김철성
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.40 no.2
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    • pp.47-55
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    • 2003
  • In this paper, the performance of DS-CDMA system with smart antenna is analyzed for different bandwidths (1.25MHz,5MHz) and different channel environments (rural, urban) in wideband multipath channel. For the analysis of smart antenna system, the vector channel having the spatio-temporal correlation is modeled as a time-variant linear filter in time, and each multipath is assumed as a reflective wave from only one direction (only one cluster) in space. Several multipath is within one chip are distingushed into each one and the strongest signal is selected, DS-CDMA system with smart antenna using wider bandwidth present better performance than that using narrow bandwidth. It is shown that the smart antenna is more effective in urban area when using 2D-RAKE receiver.

Microarray Data Retrieval Using Fuzzy Signature Sets (퍼지 시그너쳐 집합을 이용한 마이크로어레이 데이터 검색)

  • Lee, Sun-A;Lee, Keon-Myung;Ryu, Keun-Ho
    • Journal of the Korean Institute of Intelligent Systems
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    • v.19 no.4
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    • pp.545-549
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    • 2009
  • Microarray data sets could contain thousands of gene expression levels and have been considered as an important source from which meaningful patterns could be extracted for further analysis in biological studies. It is sometimes necessary to retrieve out specific genes or samples of analyst's interest in an effective way. This paper is concerned with a method to make use of fuzzy signature set in order to filter out genes or samples which satisfy complicated constraints as well as simple ones. Fuzzy signatures are an extension of vector valued fuzzy sets, in which elements of the vector are allowed to have a vector. Fuzzy signature sets are similar to fuzzy signatures except that their leaf elements are fuzzy sets defined on the interval [0,1]. This paper introduces an extension of fuzzy signature sets which specifies aggregation operators at each internal node and comparison operators for aggregation. It also shows how to use the extended fuzzy signature sets in microarray data retrieval and some examples of its usage.

Cloning and Expression of hpaA Gene of Korean Strain Helicobacter pylori K51 in Oral Vaccine Delivery Vehicle Lactococcus lactis subsp. lactis MG1363

  • Kim Su-Jung;Jun Do-Youn;Yang Chae-Ha;Kim Young-Ho
    • Journal of Microbiology and Biotechnology
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    • v.16 no.2
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    • pp.318-324
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    • 2006
  • In order to develop an oral vaccine to prevent H. pylori infection, we have expressed the hpaA gene of H. pylori K51 isolated from Korean patients, encoding 29-kDa HpaA that is known to be localized on the cell surface and flagella sheath, in a live delivery vector system, Lactococcus lactis. The hpaA gene, amplified by PCR using the genomic DNA of H. pylori K51, was cloned in the pGEX-2T vector, and the DNA sequence analysis revealed that the hpaA gene of H. pylori K51 had 99.7% and 94.8% identity with individual hpaA genes of the H. pylori 26695 strain (U.K) and the J99 strain (U.S.A). A polyclonal anti-HpaA antibody was raised in rats using GST-HpaA fusion protein as the antigen. The hpaA gene was inserted in an E. coli-L. lactis-shuttle vector (pMG36e) to express in L. lactis. Western blot analysis showed that the expression level of HpaA in the L. lactis transformant remained constant from the exponential phase to the stationary phase, without extracelluar secretion. These results indicate that the HpaA of H. pylori K51 was successfully expressed in L. lactis, and suggest that the recombinant L. lactis expressing HpaA may be applicable as an oral vaccine to induce a protective immune response against H. pylori.

Development of a Recognition System of Smile Facial Expression for Smile Treatment Training (웃음 치료 훈련을 위한 웃음 표정 인식 시스템 개발)

  • Li, Yu-Jie;Kang, Sun-Kyung;Kim, Young-Un;Jung, Sung-Tae
    • Journal of the Korea Society of Computer and Information
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    • v.15 no.4
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    • pp.47-55
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    • 2010
  • In this paper, we proposed a recognition system of smile facial expression for smile treatment training. The proposed system detects face candidate regions by using Haar-like features from camera images. After that, it verifies if the detected face candidate region is a face or non-face by using SVM(Support Vector Machine) classification. For the detected face image, it applies illumination normalization based on histogram matching in order to minimize the effect of illumination change. In the facial expression recognition step, it computes facial feature vector by using PCA(Principal Component Analysis) and recognizes smile expression by using a multilayer perceptron artificial network. The proposed system let the user train smile expression by recognizing the user's smile expression in real-time and displaying the amount of smile expression. Experimental result show that the proposed system improve the correct recognition rate by using face region verification based on SVM and using illumination normalization based on histogram matching.

Analysis of Camera Operation in MPEG2 Compressed Domain Using Generalized Hough Transform Technique (일반화된 Hough 변환기법을 이용한 MPEG2 압축영역에서의 카메라의 움직임 해석)

  • Yoo, Won-Young;Choi, Jeong-Il;Lee, Joon-Whoan
    • The Transactions of the Korea Information Processing Society
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    • v.7 no.11
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    • pp.3566-3575
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    • 2000
  • In this paper, we propose an simple and efficient method to estunate the camera operation by using compressed information, which is extracted diracily from MPEG2 stream without complete decoding. In the method, the motion vector is converted into approximate optical flow by using the feature of predicted frame, because the motion vector in MPEG2 video stream is not regular sequene. And they are used to estimate the camera operation, which consist of pan, and zoom by Hough transform technique. The method provided better results than the least square method for video stream of basketball and socer games. The proposed method can have a reduced computational complexity because the information is directiv abtained in compressed domain. Additionally it can be a useful technology in content-based searching and analysis of video information. Also, the estimatd cameral operationis applicable in searching or tracking objects in MPEG2 video stream without decoding.

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Texture Classification Using Wavelet-Domain BDIP and BVLC Features With WPCA Classifier (웨이브렛 영역의 BDIP 및 BVLC 특징과 WPCA 분류기를 이용한 질감 분류)

  • Kim, Nam-Chul;Kim, Mi-Hye;So, Hyun-Joo;Jang, Ick-Hoon
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.49 no.2
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    • pp.102-112
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    • 2012
  • In this paper, we propose a texture classification using wavelet-domain BDIP (block difference of inverse probabilities) and BVLC (block variance of local correlation coefficients) features with WPCA (whitened principal component analysis) classifier. In the proposed method, the wavelet transform is first applied to a query image. The BDIP and BVLC operators are next applied to the wavelet subbands. Global moments for each subband of BDIP and BVLC are then computed and fused into a feature vector. In classification, the WPCA classifier, which is usually adopted in the face identification, searches the training feature vector most similar to the query feature vector. Experimental results show that the proposed method yields excellent texture classification with low feature dimension for test texture image DBs.

Analysis and Detection Method for Line-shaped Echoes using Support Vector Machine (Support Vector Machine을 이용한 선에코 특성 분석 및 탐지 방법)

  • Lee, Hansoo;Kim, Eun Kyeong;Kim, Sungshin
    • Journal of the Korean Institute of Intelligent Systems
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    • v.24 no.6
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    • pp.665-670
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    • 2014
  • A SVM is a kind of binary classifier in order to find optimal hyperplane which separates training data into two groups. Due to its remarkable performance, the SVM is applied in various fields such as inductive inference, binary classification or making predictions. Also it is a representative black box model; there are plenty of actively discussed researches about analyzing trained SVM classifier. This paper conducts a study on a method that is automatically detecting the line-shaped echoes, sun strobe echo and radial interference echo, using the SVM algorithm because the line-shaped echoes appear relatively often and disturb weather forecasting process. Using a spatial clustering method and corrected reflectivity data in the weather radar, the training data is made up with mean reflectivity, size, appearance, centroid altitude and so forth. With actual occurrence cases of the line-shaped echoes, the trained SVM classifier is verified, and analyzed its characteristics using the decision tree method.

Stress Detection of Railway Point Machine Using Sound Analysis (소리 정보를 이용한 철도 선로전환기의 스트레스 탐지)

  • Choi, Yongju;Lee, Jonguk;Park, Daihee;Lee, Jonghyun;Chung, Yongwha;Kim, Hee-Young;Yoon, Sukhan
    • KIPS Transactions on Software and Data Engineering
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    • v.5 no.9
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    • pp.433-440
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    • 2016
  • Railway point machines act as actuators that provide different routes to trains by driving switchblades from the current position to the opposite one. Since point failure can significantly affect railway operations with potentially disastrous consequences, early stress detection of point machine is critical for monitoring and managing the condition of rail infrastructure. In this paper, we propose a stress detection method for point machine in railway condition monitoring systems using sound data. The system enables extracting sound feature vector subset from audio data with reduced feature dimensions using feature subset selection, and employs support vector machines (SVMs) for early detection of stress anomalies. Experimental results show that the system enables cost-effective detection of stress using a low-cost microphone, with accuracy exceeding 98%.