• Title/Summary/Keyword: Unreported species

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A report on 17 unrecorded bacterial species in Korea isolated from Lakes Soyang and Chungju in 2016

  • Jeon, Hyoung Tae;Joung, Yochan;Kim, Suhyun;Lim, Yeonjung;Cho, Jang-Cheon
    • Journal of Species Research
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    • v.6 no.2
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    • pp.163-170
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    • 2017
  • As a part of the research program 'Survey of freshwater organisms and specimen collection', freshwater samples were collected from Lakes Soyang and Chungju in 2016. Hundreds of bacterial strains were isolated from the samples and were identified based on 16S rRNA gene sequences. Among the bacterial isolates, strains showing higher than 98.7% sequence similarity with validly published bacterial species not reported in Korea were selected as unrecorded bacterial species. Based on 16S rRNA gene sequence similarity, 17 strains were identified as unrecorded bacterial species in Korea. The 17 bacterial strains were phylogenetically diverse and belonged to four phyla, seven classes, 13 orders, 14 families, and 16 genera. At generic level, the unreported species were affiliated with Caulobacter, Paracoccus, and Mesorhizobium of the class Alphaproteobacteria, Deefgea, Undibacterium, Chitinimonas, Inhella, and Sphaerotilus of the class Betaproteobacteria, Vibrio and Cellvibrio of the class Gammaproteobacteria, Sanguibacter and Clavibacter of the phylum Actinobacteria, Lactococcus of the phylum Firmicutes, Deinococcus of the class Deinococci, and Chryseobacterium and Flavobacterium of the phylum Bacteroidetes. The unreported species were further characterized by examining Gram reaction, colony and cell morphology, biochemical properties, and phylogenetic position. The detailed description of the 17 unreported species are also provided.

Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018

  • Maeng, Soohyun;Park, Yuna;Oh, Hyejin;Damdintogtokh, Tuvshinzaya;Bang, Minji;Lee, Byoung-Hee;Lee, Ki-eun;Kim, Myung Kyum
    • Journal of Species Research
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    • v.10 no.2
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    • pp.99-116
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    • 2021
  • In 2018, as a subset study to discover indigenous prokaryotic species in Korea, a total of 18 unreported bacterial strains were discovered. From the high 16S rRNA gene sequence similarity (>98.8%) and formation of a robust phylogenetic clade, it was determined that each strain belonged an independent and predefined bacterial species. There were no official report that these 18 species were previously described in Korea; therefore, one strain of Williamsia, one strain of Rhodococcus, three strains of Microbacterium, three strains of Agromyces, one strain of Arthrobacter, one strain of Paeniglutamicibacter, one strain of Pseudarthrobacter, one strain of Nocardioides, one strain of Fibrella, one strain of Hymenobacter, one strain of Deinococcus, two strains of Fictibacillus, and one strain of Paenibacillus are described as unreported bacterial species in Korea. Gram reaction, basic biochemical characteristics, and colony and cell morphologies are described in the species description section.

Isolation of four unrecorded yeasts in the family Filobasidiaceae from soil in Korea

  • Maeng, Soohyun;Park, Yuna;Srinivasan, Sathiyaraj
    • Journal of Species Research
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    • v.10 no.4
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    • pp.350-355
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    • 2021
  • In 2020, 11 Basidiomycetous yeast strains were isolated from soil samples collected from the forests of Namhansanseong in Korea. Among them, seven species were reported, but four species were unreported in Korea. To identify wild yeasts, pairwise sequence comparisons of D1/D2 domain of the 26S rRNA were performed using Basic Local Alignment Search Tool (BLAST). The cell morphologies and assimilation test are observed by phase contrast microscope and API 20C AUX kit, respectively. The 11 strains were assigned to the genera Rhodotorula (4 strains) of the order Sporidiobolales of the class Microbotryomycetes; and Cryptococcus(2 strains), Goffeauzyma (1 strains), Naganishia (2 strains) of the order Filobasidiales and Saitozyma (2 strains) of the order Tremellales of the class Tremellomycetes in the phylum Basidiomycota. The unreported yeast strains Cryptococcus gastricus 20n5-2, Goffeauzyma gilvescens 20n2-7, Naganishia adeliensis 20n8-1, and Naganishia friedmannii 20n24-1 belong to the family Filobasidiaceae. All strains had oval shaped cells and cream-colored colonies cultured on on YM agar for 3 days. In this study, we focus on the description of four unreported yeast species in Korea.

A report of 22 unrecorded bacterial species in Korea, isolated from the North Han River basin in 2017

  • Joung, Yochan;Park, Miri;Jang, Hye-Jin;Jung, Ilsuk;Cho, Jang-Cheon
    • Journal of Species Research
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    • v.7 no.3
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    • pp.193-201
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    • 2018
  • Culturable bacterial diversity was investigated using freshwater and sediment samples collected from the North Han River basin in 2017, as a part of the research program 'Survey of freshwater organisms and specimen collection'. Over a thousand bacterial strains were isolated from the samples and identified based on 16S rRNA gene sequences. Among the bacterial isolates, 22 strains showing higher than 98.7% sequence similarity with validly published bacterial species, but not reported in Korea, were classified as unrecorded species in Korea. The 22 bacterial strains were phylogenetically diverse and assigned to 6 classes, 11 orders, 15 families, and 21 different genera. At the generic level, the unreported species were affiliated with Flavobacterium of the class Flavobacteria, Flexibacter of the class Cytophagia, Blastomonas, Brevundimonas, Elstera, Rhizobium, Roseomonas, Sphingomonas, and Xanthobacter of the class Alphaproteobacteria, Albidiferax, Cupriavidus, Curvibacter, Ferribacterium, Hydrogenophaga, Iodobacter, Limnohabitans, Polaromonas, Undibacterium, and Variovorax of the class Betaproteobacteria, Pseudomonas of the class Gammaproteobacteria, and Arcobacter of the class Epsilonproteobacteria. The unreported bacterial species were further characterized by examining Gram reaction, colonial and cellular morphology, and biochemical properties. The detailed descriptions of 22 strains of the unreported bacterial species are also provided.

A report on 14 unrecorded bacterial species isolated from the Nakdong River, South Korea

  • Cho, Ja Young;Baek, Kiwoon;Kim, Eui-Jin;Han, Ji-Hye;Hwang, Seoni;Choi, Ahyoung
    • Journal of Species Research
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    • v.9 no.2
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    • pp.77-84
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    • 2020
  • As a part of the research project "Survey of freshwater organisms and specimen collection," freshwater samples were collected from the Nakdong River. Among the bacterial isolates, we selected strains that showed higher than 98.7% 16S rRNA gene sequence similarity with confirmed bacterial species previously unreported in South Korea. The 14 new records to South Korea were phylogenetically diverse and belonged to four phyla, six classes, 11 orders, and 14 genera. At the genus level, these species were found to be affiliated with Reyranella, Ferrovibrio, Brevundimonas, and Aquidulcibacter of the class Alphaproteobacteria; Pseudomonas, Cellvibrio, and Photobacterium of the class Gammaproteobacteria; Paenibacillus and Bacillus of the phylum Firmicutes; Chryseobacterium, Flavobacterium, Pedobacter of the phylum Bacteroidetes; and Actinomadura and Leifsonia of the phylum Actinobacteria. These species were further characterized by examining their Gram reaction, colony and cell morphologies, biochemical properties, and phylogenetic positions. The detailed descriptions of these 14 previously unreported species are provided.

Peronospora bulbocapni, an Unreported Species Causing Downy Mildew on Corydalis ambigua in Korea

  • Choi, Young-Joon
    • The Korean Journal of Mycology
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    • v.46 no.4
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    • pp.505-510
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    • 2018
  • Peronospora is the largest genus of the order Peronosporales (Oomycota) and contains more than 550 accepted species, which causes downy mildew on many economically important crops. During a survey of downy mildew flora in Korea, a previously unreported species of Peronospora has been found on Corydalis ambigua. Based on molecular phylogenetic and morphological analyses, the causal agent was identified as Peronospora bulbocapni. This is the first report of Peronospora bulbocapni occurring on Corydalis ambigua in Korea.

A report of 31 unrecorded bacterial species isolated from freshwater

  • Hyangmi Kim;Sanghwa Park;Kyung June Yim;Ja Young Cho;Eui-Jin Kim
    • Korean Journal of Environmental Biology
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    • v.40 no.4
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    • pp.442-454
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    • 2022
  • A total of 31 bacterial strains were isolated from the Geum River basin in the Republic of Korea during our investigation of indigenous prokaryotic species. The isolated bacterial strains had high 16S rRNA gene sequence similarity (>98.7%) with those of validly published bacterial species, which have not been reported in Republic of Korea. The 31 bacterial strains were phylogenetically diverse and assigned to 4 phyla, 8 classes, 18 orders, 21 families, and 27 genera. At the genus level, the unreported species were affiliated with Kineococcus, Pedococcus, Rhodoluna, Salinibacterium, Rhodoluna, Arthrobacter, Williamsia, Nakamurella, Nocardioides of the class Actinobacteria, Patulibacter of the class Thermoleophilia, Pontibacter, Hymenobacter of the class Cytophagia, Flavobacterium of the class Flavobacteriia, Geomicrobium of the class Bacilli, Brevundimonas, Gellertiella, Rhizobium, Paracoccus, Taonella, Sphingomonas of the class Alphaproteobacteria, Burkholderia, Polaromonas, Hydrogenophaga, Chitinilyticum, Azospira, Zoogloea of the class Betaproteobacteria, and Pseudomonas of the class Gammaproteobacteria. The unreported bacterial species were further characterized by examining their morphological, cultural, physiological, and biochemical properties. The detailed descriptions of the 31 bacterial strains were provided.

Studies on Flies in Korea 4. On the Hitherto Unreported Fly Species in Korea (한국산 파리의 연구 제 4 보 한국미기록 파리에 관하여)

  • 박성호
    • The Korean Journal of Zoology
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    • v.9 no.1
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    • pp.21-25
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    • 1966
  • During the period from 5 to 15 , August 1965 , the author had made collection of flies at Mt. Sol-ak, Kangwon-Do and a total of 2000 specimens was collected . A close examination of the specimens reveals that Sarcophaga sichotealini (Rohdendorf, 1938) and anthomyia illocata Walker , 1956 wer ehitherto unreported from Korea. The author wishes to express his deep appreciation to Dr, Rokuro Kano to whom he owes for the identification of the said two species.

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Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus

  • Chun, Jeesun;Bae, Jin-Woo;Cha, Chang-Jun;Cho, Jang-Cheon;Chun, Jongsik;Im, Wan-Taek;Jeon, Che Ok;Joh, Kiseong;Kim, Seung Bum;Seong, Chi Nam;Yoon, Jung-Hoon;Jahng, Kwang Yeop
    • Journal of Species Research
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    • v.4 no.2
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    • pp.137-144
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    • 2015
  • As a result of the research project 'Survey and excavation of Korean indigenous species' to secure unrecorded species in Korea, a total of 14 unreported bacterial strains assigned to the phyla Deinococcus-Thermus and Bacteroidetes were isolated from various environmental habitats all around Korea. On the basis of 16S rRNA gene sequence similarity and affiliation to the clade with the closest species, it was concluded that the isolates represent deep groups of the phyla Deinococcus-Thermus and Bacteroidetes. There have been no records about these 14 unreported species in Korea; therefore 2 species of 2 genera in the class Deinococci within the phylum Deinococcus-Thermus, and 11 species of 9 genera in the class Flavobacteriia and one species in one genus in the class Sphigobacteriia within the phylum Bacteroidetes are described as unreported species found in Korea. Gram staining reaction, morphological and other biochemical characteristics are described in the species description section.

Identification and Characterization of Unreported Penicillium Species in Korea

  • Choi, Doo-Ho;Kim, Young-Guk;Lee, In-Seon;Hong, Seung-Bum;Kim, Jong-Guk
    • The Korean Journal of Mycology
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    • v.48 no.4
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    • pp.445-456
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    • 2020
  • Fungal species belonging to the genus Penicillium are indigenous to a wide range of natural environments. Since the first published reports detailing the discovery of Penicillium, new species have been identified in various countries, including Korea. We present here a full characterization of five species of Penicillium that were previously unreported in Korea. Based on the morphologic characteristics and sequences of genes encoding fungal ��-tubulin and calmodulin, we identified five Penicillium species, including P. hetheringtonii, P. sublectaticum, and P. jacksonii, which have been unrecorded in Korea, and confirming P. maximae and P. cremeogriseum, as the endophytic fungi isolated in Gyeongsang province, Korea. In this article, we provide detailed morphological descriptions of these fungal species.