• Atmosphere
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• v.17 no.2
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• pp.159-169
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• 2007

A comparison of the three land cover data sets (United States Geological Survey: USGS, International Geosphere Biosphere Programme: IGBP, and University of Maryland: UMd), derived from 1992-1993 Advanced Very High Resolution Radiometer(AVHRR) data sets, was performed over the Asian continent. Preprocesses such as the unification of map projection and land cover definition, were applied for the comparison of the three different land cover data sets. Overall, the agreement among the three land cover data sets was relatively high for the land covers which have a distinct phenology, such as urban, open shrubland, mixed forest, and bare ground (>45%). The ratios of triple agreement (TA), couple agreement (CA) and total disagreement (TD) among the three land cover data sets are 30.99%, 57.89% and 8.91%, respectively. The agreement ratio between USGS and IGBP is much greater (about 80%) than that (about 32%) between USGS and UMd (or IGBP and UMd). The main reasons for the relatively low agreement among the three land cover data sets are differences in 1) the number of land cover categories, 2) the basic input data sets used for the classification, 3) classification (or clustering) methodologies, and 4) level of preprocessing. The number of categories for the USGS, IGBP and UMd are 24, 17 and 14, respectively. USGS and IGBP used only the 12 monthly normalized difference vegetation index (NDVI), whereas UMd used the 12 monthly NDVI and other 29 auxiliary data derived from AVHRR 5 channels. USGS and IGBP used unsupervised clustering method, whereas UMd used the supervised technique, decision tree using the ground truth data derived from the high resolution Landsat data. The insufficient preprocessing in USGS and IGBP compared to the UMd resulted in the spatial discontinuity and misclassification.

• Asian-Australasian Journal of Animal Sciences
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• v.29 no.9
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• pp.1353-1362
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• 2016

Hanwoo, a Korean native cattle (Bos taurus coreana), has great economic value due to high meat quality. Also, the breed has genetic variations that are associated with production traits such as health, disease resistance, reproduction, growth as well as carcass quality. In this study, next generation sequencing technologies and the availability of an appropriate reference genome were applied to discover a large amount of single nucleotide polymorphisms (SNPs) in ten Hanwoo bulls. Analysis of whole-genome resequencing generated a total of 26.5 Gb data, of which 594,716,859 and 592,990,750 reads covered 98.73% and 93.79% of the bovine reference genomes of UMD 3.1 and Btau 4.6.1, respectively. In total, 2,473,884 and 2,402,997 putative SNPs were discovered, of which 1,095,922 (44.3%) and 982,674 (40.9%) novel SNPs were discovered against UMD3.1 and Btau 4.6.1, respectively. Among the SNPs, the 46,301 (UMD 3.1) and 28,613 SNPs (Btau 4.6.1) that were identified as Hanwoo-specific SNPs were included in the functional genes that may be involved in the mechanisms of milk production, tenderness, juiciness, marbling of Hanwoo beef and yellow hair. Most of the Hanwoo-specific SNPs were identified in the promoter region, suggesting that the SNPs influence differential expression of the regulated genes relative to the relevant traits. In particular, the non-synonymous (ns) SNPs found in CORIN, which is a negative regulator of Agouti, might be a causal variant to determine yellow hair of Hanwoo. Our results will provide abundant genetic sources of variation to characterize Hanwoo genetics and for subsequent breeding.

• Atmosphere
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• v.20 no.4
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• pp.415-426
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• 2010

A Land cover map over East Asian region (Kongju national university Land Cover map: KLC) is classified by using support vector machine (SVM) and evaluated with ground truth data. The basic input data are the recent three years (2006-2008) of MODIS (MODerate Imaging Spectriradiometer) NDVI (normalized difference vegetation index) data. The spatial resolution and temporal frequency of MODIS NDVI are 1km and 16 days, respectively. To minimize the number of cloud contaminated pixels in the MODIS NDVI data, the maximum value composite is applied to the 16 days data. And correction of cloud contaminated pixels based on the spatiotemporal continuity assumption are applied to the monthly NDVI data. To reduce the dataset and improve the classification quality, 9 phenological data, such as, NDVI maximum, amplitude, average, and others, derived from the corrected monthly NDVI data. The 3 types of land cover maps (International Geosphere Biosphere Programme: IGBP, University of Maryland: UMd, and MODIS) were used to build up a "quasi" ground truth data set, which were composed of pixels where the three land cover maps classified as the same land cover type. The classification results show that the fractions of broadleaf trees and grasslands are greater, but those of the croplands and needleleaf trees are smaller compared to those of the IGBP or UMd. The validation results using in-situ observation database show that the percentages of pixels in agreement with the observations are 80%, 77%, 63%, 57% in MODIS, KLC, IGBP, UMd land cover data, respectively. The significant differences in land cover types among the MODIS, IGBP, UMd and KLC are mainly occurred at the southern China and Manchuria, where most of pixels are contaminated by cloud and snow during summer and winter, respectively. It shows that the quality of raw data is one of the most important factors in land cover classification.

• The Journal of Korean Medicine Ophthalmology and Otolaryngology and Dermatology
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• v.26 no.1
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• pp.35-49
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• 2013

Objectives : We aimed to determine therapeutic effects of probiotics-fermented Magnolia denudata(MD) in the allergic rhinitis model mice. Methods : Polyphenol production, DPPH radical scavenging activity and NO inhibition of fermented MD by different bacterial strains were evaluated to select the one that is most suitable for fermentation. Thirty C57BL/6 mice were divided randomly into 5 groups as follows: normal group, ovalbumin(OVA)-treated plus water fed(CON group), OVA-treated plus unfermented MD fed(UMD group), OVA-treated plus fermented autoclaved MD fed(A-FMD group) and OVA-treated plus fermented unautoclaved MD fed(FMD group). After 9 weeks, we observed changes in the blood cell count, OVA-specific IgE level, nasal rubbing, nasal mucosal tissue and body weight. Results : Extract of MD fermented by Bifidobacterium breve(BB) for 48 hours showed the highest anti-oxidant activity and anti-inflammatory activity out of all the other bacterial strains. The number of eosinophil count in A-FMD, FMD group and platelet count in FMD group showed statistically significant decrease(p<0.05). OVA-specific IgE level decreased in all 3 experimental groups, significantly in UMD and A-FMD group. Nasal symptoms were attenuated in all 3 experimental groups, statistically significant in A-FMD and FMD group (p<0.05). Histologically, infiltration of eosinophils into the nasal mucosa decreased in all 3 experimental groups, especially marked decrease in FMD group. Conclusions : According to the above results, it is considered that probiotics-fermented Magnolia denudata has inhibitory effects on the allergic rhinitis animal models.

• Korean Journal of Remote Sensing
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• v.23 no.3
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• pp.161-169
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• 2007

A study was conducted in the Hong Kong with the aim of deriving an algorithm for the retrieval of suspended sediment (SS) and sea surface salinity (SSS) concentrations from Aqua/MODIS level 1B reflectance data with 250m and 500m spatial resolutions. 'In-situ' measurements of SS and SSS were also compared with coincident MODIS spectral reflectance measurements over the ocean surface. This is the first study of SSS modeling in Southeast Asia using earth observation satellite images. Three analysis techniques such as multiple regression, linear regression, and principal component analysis (PCA) were performed on the MODIS data and the 'in-situ' measurement datasets of the SS and SSS. Correlation coefficients by each analysis method shows that the best correlation results are multiple regression from the 500m spatial resolution MODIS images, $R^2$= 0.82 for SS and $R^2$ = 0.81 for SSS. The Root Mean Square Error (RMSE) between satellite and 'in-situ' data are 0.92mg/L for SS and 1.63psu for SSS, respectively. These suggest that 500m spatial resolution MODIS data are suitable for water quality modeling in the study area. Furthermore, the application of these models to MODIS images of the Hong Kong and Pearl River Delta (PRO) Region are able to accurately reproduce the spatial distribution map of the high turbidity with realistic SS concentrations.

• BMB Reports
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• v.46 no.6
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• pp.310-315
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• 2013

The gene order on the X chromosome of eutherians is generally highly conserved, although an increase in the rate of rearrangement has been reported in the rodent lineage. Conservation of the X chromosome is thought to be caused by selection related to maintenance of dosage compensation. However, we herein reveal that the cattle (Btau4.0) lineage has experienced a strong increase in the rate of X-chromosome rearrangement, much stronger than that previously reported for rodents. We also show that this increase is not matched by a similar increase on the autosomes and cannot be explained by assembly errors. Furthermore, we compared the difference in two cattle genome assemblies: Btau4.0 and Btau6.0 (Bos taurus UMD3.1). The results showed a discrepancy between Btau4.0 and Btau6.0 cattle assembly version data, and we believe that Btau6.0 cattle assembly version data are not more reliable than Btau4.0.

• KCID journal
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• v.14 no.1
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• pp.80-88
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• 2007

The Shuttle Radar Topography Mission (SRTM) obtained elevation data on a near-global scale to generate the most complete high-resolution digital topographic database of Earth. SRTM consisted of a specially modified radar system that flew onboard the Space shuttle SRTM consisted of a specially modified radar system that flew onboard the Space Shuttle Endeavour during an 11-day mission on February 2000. Since 2004, in a GLCF (Global Land Cover Facility, http;//glcf.umiacs.umd.edu/) web-site, products of SRTM including 1Km and 90m resolutions for outside US and a 30m resolution for the US have been provided. This study is to assess the accuracy of SRTM-DEM in comparing with NGIS-DEM generated from NGIS digital topographic map(1:25,000) in Guem river watershed. For the Geum river watershed, SREM-DEM elevation ranged from 0 to 1,605m and NGIS-DEM ranged from 6 to 1,610m, and the average elevation of SRTM-DEM was 226.7m and 218.9m for NGIS-DEM, respectively. NGIS-DEM was subtracted from SRTM in three zones -Zone I (0~100m), Zone II (100~400m), Zone III (over 400m)- to estimate difference between SRTM and NGIS-DEM. As the results, the differences of these DEM were 5.2m (11.6%) in Zone I, 8.8m (3.8%) in Zone II, 12.5m (2.1%) in Zone III. Although there were differences between SRTM-DEM and NGIS-DEM, SREM-DEM would be possible to be utilized as DEM data for the region where DEM is not prepared.

• Korean Journal of Remote Sensing
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• v.37 no.6_1
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• pp.1611-1623
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• 2021

Thisstudy demonstratessoil moisture and evapotranspiration performance using Korea Land Data Assimilation System (KLDAS) under Korea Land Information System (KLIS). Spin-up was repeated 8 times in 2018. In addition, low-resolution and high-resolution meteorological data were generated using meteorological data observed by Korea Meteorological Administration (KMA), Rural Development Administration (RDA), Korea Rural Community Corporation (KRC), Korea Hydro & Nuclear Power Co.,Ltd. (KHNP), Korea Water Resources Corporation (K-water), and Ministry of Environment (ME), and applied to KLDAS. And, to confirm the degree of accuracy improvement of Korea Low spatial resolution (hereafter, K-Low; 0.125°) and Korea High spatial resolution (hereafter, K-High; 0.01°), soil moisture and evapotranspiration to which Modern-Era Retrospective analysis for Research and Applications, version 2 (MERRA-2) and ASOS-Spatial (ASOS-S) used in the previous study were applied were evaluated together. As a result, optimization of the initial boundary condition requires 2 time (58 point), 3 time (6 point), and 6 time (3 point) spin-up for soil moisture. In the case of evapotranspiration, 1 time (58 point) and 2 time (58 point) spin-ups are required. In the case of soil moisture to which MERRA-2, ASOS-S, K-Low, and K-High were applied, the mean of R² were 0.615, 0.601, 0.594, and 0.664, respectively, and in the case of evapotranspiration, the mean of R² were 0.531, 0.495, 0.656, and 0.677, respectively, indicating the accuracy of K-High was rated as the highest. The accuracy of KLDAS can be improved by securing a large number of ground observation data through the results of this study and generating high-resolution grid-type meteorological data. However, if the meteorological condition at each point is not sufficiently taken into account when converting the point data into a grid, the accuracy is rather lowered. For a further study, it is expected that higher quality data can be produced by generating and applying grid-type meteorological data using the parameter setting of IDW or other interpolation techniques.

• Journal of the Korean Data and Information Science Society
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• v.26 no.6
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• pp.1249-1258
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• 2015

DGAT1(diacylglycerol O-acyltransferase1) gene is well known as a major gene of milk production in dairy cattle. This study was conducted to investigate how the DGAT1 gene effect on milk yield was appeared from the genome wide association (GWA) using high density whole genome SNP chip. The data set used in this study consisted of 353 Korean Holstein sires with 50k SNP genotypes and deregressed estimated breeding values of milk yield. After quality control 41,051 SNPs were selected and locations on chromosome were mapped using UMD 3.1. Bayesian regression of BayesB method (pi=0.99) was used to estimate the SNP effects and genomic breeding values. Percentages of variance explained by 1 Mb non-overlapping windows were calculated to detect the QTL region. As the result of this study, top 1 and 3 of 2,516 windows were seen around DGAT1 gene region and 0.51% and 0.48% of genetic variance were explained by these two windows. Although SNPs on the DGAT1 gene region are excluded in commercial 50k SNP chip, the effect of DGAT1 gene seem to be reflected on GWA by the SNPs which are in linkage disequilibrium with DGAT1 gene.

• Food Science of Animal Resources
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• v.33 no.6
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• pp.715-722
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• 2013

Heugu (Korea Black Cattle) is one of the indigenous cattle breeds in Korea; however there has been severe lack of genomic studies on the breed. In this study, we report the first whole genome resequencing of Heugu at higher sequence coverage using Illumina HiSeq 2000 platform. More than 153.6 Giga base pairs sequence was obtained, of which 97% of the reads were mapped to the bovine reference sequence assembly (UMD 3.1). The number of non-redundantly mapped sequence reads corresponds to approximately 28.9-fold coverage across the genome. From these data, we identified a total of over six million single nucleotide polymorphisms (SNPs), of which 29.4% were found to be novel using the single nucleotide polymorphism database build 137. Extensive annotation was performed on all the detected SNPs, showing that most of SNPs were located in intergenic regions (70.7%), which is well corresponded with previous studies. Of the total SNPs, we identified substantial numbers of non-synonymous SNPs (13,979) in 5,999 genes, which could potentially affect meat quality traits in cattle. These results provide genome-wide SNPs that can serve as useful genetic tools and as candidates in searches for phenotype-altering DNA difference implicated with meat quality traits in cattle. The importance of this study can be further pronounced with the first whole genome sequencing of the valuable local genetic resource to be used in further genomic comparison studies with diverse cattle breeds.