1 |
Partipilo, G., D'Addabbo, P., Lacalandra, G. M., Liu, G. E. and Rocchi, M. (2011) Refinement of Bos taurus sequence assembly based on BAC-FISH experiments. BMC Genomics 12, 639.
DOI
|
2 |
Heard, E. (2004) Recent advances in X-chromosome inactivation. Curr. Opin. Cell Biol. 16, 247-255.
DOI
ScienceOn
|
3 |
Raudsepp, T., Lee, E. J., Kata, S. R., Brinkmeyer, C., Mickelson, J. R., Skow, L. C., Womack, J. E. and Chowdhary, B. P. (2004) Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping. Proc. Natl. Acad. Sci. U.S.A. 101, 2386-2391.
DOI
|
4 |
Ross, M. T., Grafham, D. V., Coffey, A. J., Scherer, S., McLay, K., Muzny, D., Platzer, M., Howell, G. R., Burrows, C., Bird, C. P., Frankish, A., Lovell, F. L., Howe, K. L., Ashurst, J. L., Fulton, R. S., Sudbrak, R., Wen, G., Jones, M. C., Hurles, M. E., Andrews, T. D., Scott, C. E., Searle, S., Ramser, J., Whittaker, A., Deadman, R., Carter, N. P., Hunt, S. E., Chen, R., Cree, A., Gunaratne, P., Havlak, P., Hodgson, A., Metzker, M. L., Richards, S., Scott, G., Steffen, D., Sodergren, E., Wheeler, D. A., Worley, K. C., Ainscough, R., Ambrose, K. D., Ansari-Lari, M. A., Aradhya, S., Ashwell, R. I., Babbage, A. K., Bagguley, C. L., Ballabio, A., Banerjee, R., Barker, G. E., Barlow, K. F., Barrett, I. P., Bates, K. N., Beare, D. M., Beasley, H., Beasley, O., Beck, A., Bethel, G., Blechschmidt, K., Brady, N., Bray-Allen, S., Bridgeman, A. M., Brown, A. J., Brown, M. J., Bonnin, D., Bruford, E. A., Buhay, C., Burch, P., Burford, D., Burgess, J., Burrill, W., Burton, J., Bye, J. M., Carder, C., Carrel, L., Chako, J., Chapman, J. C., Chavez, D., Chen, E., Chen, G., Chen, Y., Chen, Z., Chinault, C., Ciccodicola, A., Clark, S. Y., Clarke, G., Clee, C. M., Clegg, S., Clerc-Blankenburg, K., Clifford, K., Cobley, V., Cole, C. G., Conquer, J. S., Corby, N., Connor, R. E., David, R., Davies, J., Davis, C., Davis, J., Delgado, O., Deshazo, D., Dhami, P., Ding, Y., Dinh, H., Dodsworth, S., Draper, H., Dugan-Rocha, S., Dunham, A., Dunn, M., Durbin, K. J., Dutta, I., Eades, T., Ellwood, M., Emery-Cohen, A., Errington, H., Evans, K. L., Faulkner, L., Francis, F., Frankland, J., Fraser, A. E., Galgoczy, P., Gilbert, J., Gill, R., Glockner, G., Gregory, S. G., Gribble, S., Griffiths, C., Grocock, R., Gu, Y., Gwilliam, R., Hamilton, C., Hart, E. A., Hawes, A., Heath, P. D., Heitmann, K., Hennig, S., Hernandez, J., Hinzmann, B., Ho, S., Hoffs, M., Howden, P. J., Huckle, E. J., Hume, J., Hunt, P. J., Hunt, A. R., Isherwood, J., Jacob, L., Johnson, D., Jones, S., de Jong, P. J., Joseph, S. S., Keenan, S., Kelly, S., Kershaw, J. K., Khan, Z., Kioschis, P., Klages, S., Knights, A. J., Kosiura, A., Kovar-Smith, C., Laird, G. K., Langford, C., Lawlor, S., Leversha, M., Lewis, L., Liu, W., Lloyd, C., Lloyd, D. M., Loulseged, H., Loveland, J. E., Lovell, J. D., Lozado, R., Lu, J., Lyne, R., Ma, J., Maheshwari, M., Matthews, L. H., McDowall, J., McLaren, S., McMurray, A., Meidl, P., Meitinger, T., Milne, S., Miner, G., Mistry, S. L., Morgan, M., Morris, S., Muller, I., Mullikin, J. C., Nguyen, N., Nordsiek, G., Nyakatura, G., O'Dell, C. N., Okwuonu, G., Palmer, S., Pandian, R., Parker, D., Parrish, J., Pasternak, S., Patel, D., Pearce, A. V., Pearson, D. M., Pelan, S. E., Perez, L., Porter, K. M., Ramsey, Y., Reichwald, K., Rhodes, S., Ridler, K. A., Schlessinger, D., Schueler, M. G., Sehra, H. K., Shaw-Smith, C., Shen, H., Sheridan, E. M., Shownkeen, R., Skuce, C. D., Smith, M. L., Sotheran, E. C., Steingruber, H. E., Steward, C. A., Storey, R., Swann, R. M., Swarbreck, D., Tabor, P. E., Taudien, S., Taylor, T., Teague, B., Thomas, K., Thorpe A., Timms, K., Tracey, A., Trevanion, S., Tromans, A. C., d'Urso, M., Verduzco, D., Villasana, D., Waldron, L., Wall, M., Wang, Q., Warren, J., Warry, G. L., Wei, X., West, A., Whitehead, S. L., Whiteley, M. N., Wilkinson, J. E., Willey, D. L., Williams, G., Williams, L., Williamson, A., Williamson, H., Wilming, L., Woodmansey, R. L., Wray, P. W., Yen, J., Zhang, J., Zhou, J., Zoghbi, H., Zorilla, S., Buck, D., Reinhardt, R., Poustka, A., Rosenthal, A., Lehrach, H., Meindl, A., Minx, P. J., Hillier, L. W., Willard, H. F., Wilson, R. K., Waterston, R. H., Rice, C. M., Vaudin, M., Coulson, A., Nelson, D. L., Weinstock, G., Sulston, J. E., Durbin, R., Hubbard, T., Gibbs, R. A., Beck, S., Rogers, J. and Bentley, D. R. (2005) The DNA sequence of the human X chromosome. Nature 434, 325-337.
DOI
ScienceOn
|
5 |
Arias, J. A., Keehan, M., Fisher, P., Coppieters, W. and Spelman, R. (2009) A high density linkage map of the bovine genome. BMC Genet. 10, 18.
|
6 |
Sims, G. E., Jun, S. R., Wu, G. A. and Kim, S. H. (2009) Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. Proc. Natl. Acad. Sci. U.S.A. 106, 17077-17082.
DOI
ScienceOn
|
7 |
Keightley, P. D. and Eyre-Walker, A. (2000) Deleterious mutations and the evolution of sex. Science 290, 331-333.
DOI
ScienceOn
|
8 |
Li, W. H., Gouy, M., Sharp, P. M., O'HUigin, C. and Yang, Y. W. (1990) Molecular phylogeny of rodentia, lagomorpha, primates, artiodactyla, and carnivora and molecular clocks. Proc. Natl. Acad. Sci. U.S.A. 87, 6703-6707.
DOI
|
9 |
Hannenhalli, S. and Pevzner, P. A. (1999) Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACM 46, 1-27.
DOI
ScienceOn
|
10 |
Tesler, G. (2002) GRIMM: genome rearrangements web server. Bioinformatics 18, 492-493.
DOI
ScienceOn
|
11 |
Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees.Mol. Biol. Evol. 4, 406-425.
|
12 |
Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S. J. and Marra, M. A. (2009) Circos: an information aesthetic for comparative genomics. Genome Res. 19, 1639-1645.
DOI
ScienceOn
|
13 |
Frith, M. C., Hamada, M. and Horton, P. (2010) Parameters for accurate genome alignment. BMC Bioinformatics 11, 80.
DOI
ScienceOn
|
14 |
Lyon, M. F. (2003) The Lyon and the LINE hypothesis. Semin. Cell Dev. Biol. 14, 313-318.
DOI
ScienceOn
|
15 |
Penny, G. D., Kay, G. F., Sheardown, S. A., Rastan, S. and Brockdorff, N. (1996) Requirement for Xist in X chromosome inactivation. Nature 379, 131-137.
DOI
ScienceOn
|
16 |
Gartler, S. M. and Riggs, A. D. (1983) Mammalian X-chromosome inactivation. Annu. Rev. Genet. 17, 155-190.
DOI
ScienceOn
|
17 |
Lyon, M. F. (1998) X-chromosome inactivation: a repeat hypothesis. Cytogenet. Cell. Genet. 80, 133-137.
DOI
ScienceOn
|
18 |
Ohno, S. (1973) Ancient linkage groups and frozen accidents. Nature 244, 259-262.
DOI
ScienceOn
|
19 |
Graves, J. A., Disteche, C. M. and Toder, R. (1998) Gene dosage in the evolution and function of mammalian sex chromosomes. Cytogenet. Cell Genet. 80, 94-103.
DOI
ScienceOn
|
20 |
Graves, J. A. and Watson, J. M. (1991) Mammalian sex chromosomes: evolution of organization and function. Chromosoma 101, 63-68.
DOI
|
21 |
Delgado, C. L., Waters, P. D., Gilbert, C., Robinson, T. J. and Graves, J. A. (2009) Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years. Chromosome Res. 17, 917-926.
DOI
|
22 |
Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T., Bork, P., Botcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigo, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., Hillier, L. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., Karlsson, E. K., Karolchik, D., Kasprzyk, A., Kawai, J., Keibler, E., Kells, C., Kent, W. J., Kirby, A., Kolbe, D. L., Korf, I., Kucherlapati, R. S., Kulbokas, E. J., Kulp, D., Landers, T., Leger, J. P., Leonard, S., Letunic, I., Levine, R., Li, J., Li, M., Lloyd, C., Lucas, S., Ma, B., Maglott, D. R., Mardis, E. R., Matthews, L., Mauceli, E., Mayer, J. H., McCarthy, M., McCombie, W. R., McLaren, S., McLay, K., McPherson, J. D., Meldrim, J., Meredith, B., Mesirov, J. P., Miller, W., Miner, T. L., Mongin, E., Montgomery, K. T., Morgan, M., Mott, R., Mullikin, J. C., Muzny, D. M., Nash, W. E., Nelson, J. O., Nhan, M. N., Nicol, R., Ning, Z., Nusbaum, C., O'Connor, M. J., Okazaki, Y., Oliver, K., Overton-Larty, E., Pachter, L., Parra, G., Pepin, K. H., Peterson, J., Pevzner, P., Plumb, R., Pohl, C. S., Poliakov, A., Ponce, T. C., Ponting, C. P., Potter, S., Quail, M., Reymond, A., Roe, B. A., Roskin, K. M., Rubin, E. M., Rust, A. G., Santos, R., Sapojnikov, V., Schultz, B., Schultz, J., Schwartz, M. S., Schwartz, S., Scott, C., Seaman, S., Searle, S., Sharpe, T., Sheridan, A., Shownkeen, R., Sims, S., Singer, J. B., Slater, G., Smit, A., Smith, D. R., Spencer, B., Stabenau, A., Stange-Thomann, N., Sugnet, C., Suyama, M., Tesler, G., Thompson, J., Torrents, D., Trevaskis, E., Tromp, J., Ucla, C., Ureta-Vidal, A., Vinson, J. P., Von Niederhausern, A. C., Wade, C. M., Wall, M., Weber, R. J., Weiss, R. B., Wendl, M. C., West, A. P., Wetterstrand, K., Wheeler, R., Whelan, S., Wierzbowski, J., Willey, D., Williams, S., Wilson, R. K., Winter, E., Worley, K. C., Wyman, D., Yang, S., Yang, S. P., Zdobnov, E. M., Zody, M. C. and Lander, E. S. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
DOI
ScienceOn
|
23 |
Sandstedt, S. A. and Tucker, P. K. (2004) Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome. Genome Res. 14, 267-272.
DOI
ScienceOn
|
24 |
Raudsepp, T., Gustafson-Seabury, A., Durkin, K., Wagner, M. L., Goh, G., Seabury, C. M., Brinkmeyer-Langford, C., Lee, E. J., Agarwala, R., Stallknecht-Rice, E., Schaffer, A. A., Skow, L. C., Tozaki, T., Yasue, H., Penedo, M. C., Lyons, L. A., Khazanehdari, K. A., Binns, M. M., MacLeod, J. N., Distl, O., Guerin, G., Leeb, T., Mickelson, J. R. and Chowdhary, B. P. (2008) A 4,103 marker integrated physical and comparative map of the horse genome. Cytogenet. Genome Res. 122, 28-36.
DOI
ScienceOn
|
25 |
Zimin, A. V., Delcher, A. L., Florea, L., Kelley, D. R., Schatz, M. C., Puiu, D., Hanrahan, F., Pertea, G., Van Tassell, C. P. and Sonstegard, T. S. (2009) A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 10, R42.
DOI
ScienceOn
|
26 |
Amaral, M. E., Kata, S. R. and Womack, J. E. (2002) A radiation hybrid map of bovine X chromosome (BTAX). Mamm. Genome 13, 268-271.
DOI
ScienceOn
|
27 |
Fadista, J. and Bendixen, C. (2012) Genomic position mapping discrepancies of commercial SNP chips. PloS One 7, e31025.
DOI
|