• 제목/요약/키워드: Two-dimensional spectroscopy

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Solution Structure of the Cytoplasmic Domain of Syndecan-3 by Two-dimensional NMR Spectroscopy

  • Yeo, In-Young;Koo, Bon-Kyung;Oh, Eok-Soo;Han, Inn-Oc;Lee, Weon-Tae
    • Bulletin of the Korean Chemical Society
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    • 제29권5호
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    • pp.1013-1017
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    • 2008
  • Syndecan-3 is a cell-surface heparan sulfate proteoglycan, which performs a variety of functions during cell adhension process. It is also a coreceptor for growth factor, mediating cell-cell and cell-matrix interaction. Syndecan-3 contains a cytoplasmic domain potentially associated with the cytoskeleton. Syndecan-3 is specifically expressed in neuron cell and has related to neuron cell differentiation and development of actin filament in cell migration. Syndecans each have a unique, central, and variable (V) region in their cytoplasmic domains. And that region of syndecan-3 may modulate the interactions of the conserved C1 regions of the cytoplasmic domains by tyrosine phosphorylation. Cytoplasmic domain of syndecan-3 has been synthesized for NMR structural studies. The solution structure of syndecan-3 cytoplasmic domain has been determined by two-dimensional NMR spectroscopy and simulated-annealing calculation. The cytoplasmic domain of the syndecan proteins has a tendency to form a dimmer conformation with a central cavity, however, that of syndecan-3 demonstrated a monomer conformation with a flexible region near C-terminus. The structural information might add knowledge about the structure-function relationships among syndecan proteins.

First Simultaneous Visualization of SO2 and NO2 Plume Dispersions using Imaging Differential Optical Absorption Spectroscopy

  • Lee, Hanlim;Noh, Youngmin;Kwon, Soonchul;Hong, Hyunkee;Han, Kyung-Soo
    • Bulletin of the Korean Chemical Society
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    • 제35권4호
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    • pp.1191-1194
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    • 2014
  • Imaging Differential Optical Absorption Spectroscopy (Imaging-DOAS) has been utilized in recent years to provide slant column density (SCD) distributions of several trace gas species in the plume. The present study introduces a new method using Imaging-DOAS data to determine two-dimensional plume structure from the plume emissions of power plant in conditions of negligible aerosol effects on radiative transfer within the plume. We demonstrates for the first time that two-dimensional distributions of sulfur dioxide ($SO_2$) and nitrogen dioxide ($NO_2$) in power plant emissions can be determined simultaneously in terms of SCD distribution. The $SO_2$ SCD values generally decreased with increasing distance from the stack and with distance from the center of the plume. Meanwhile, high $NO_2$ SCD was observed at locations several hundred meters away from the first stack due to the ratio change of NO to $NO_2$ in NOx concentration, attributed to the NO oxidation by $O_3$. The results of this study show the capability of the Imaging-DOAS technique as a tool to estimate plume dimensions in power plant emissions.

What Do We Learn from Two-Dimensional Raman Spectra by Varying the Polarization Conditions?

  • Ma, Ao;Stratt, Richard M.
    • Bulletin of the Korean Chemical Society
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    • 제24권8호
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    • pp.1126-1134
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    • 2003
  • The signals obtained from the $5^{th}$-order (two-dimensional) Raman spectrum of a liquid can depend dramatically on the polarizations of the various light beams, but to date there has been no evidence presented that different polarization conditions probe any fundamentally different aspects of liquid dynamics. In order to explore the molecular significance of polarization we have carried out a molecular dynamics simulation of the $5^{th}$-order spectrum of a dilute solution of CS₂ in liquid Xe, perhaps the simplest system capable of displaying a full range of polarization dependencies. By focusing on the 5 distinct rotational invariants revealed by the different polarizations and by comparing our results with those from liquid Xe, a liquid whose spectrum has no significant polarization dependence, we discovered that the polarization experiments do, in fact, yield valuable microscopic information. With different linear combinations of the experimental response functions one can separate the part of the signal derived from the purely interaction-induced part of the many-body polarizability from the portion with the largest contributions from single-molecule polarizabilities. This division does not directly address the underlying liquid dynamics, but it significantly simplifies the interpretation of the theoretical calculations which do address this issue. We find that the different linear combinations differ as well in whether they exhibit nodal lines. Despite the absence of nodes with the atomic liquid Xe, observing the resilience of our solution's nodes when we artificially remove the anisotropy of our solute leads us to conclude that there is no direct connection between nodes and specifically molecular degrees of freedom.

THE ANALYSIS OF THE FT-NIR SPECTRA OF WATER ON THE BASIS OF TWO-STATE MODEL

  • Boguslawa, Czarnik-Matusewicz
    • 한국근적외분광분석학회:학술대회논문집
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    • 한국근적외분광분석학회 2001년도 NIR-2001
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    • pp.1181-1181
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    • 2001
  • Robinson with ${coworkers}^{1}$ have introduced two-state outer-neighbor bonding model to explain the anomalies of water. The studies on the properties of water as a function of temperature and pressure revealed that, unlike other ideas, all $H_2O$ molecules in liquid are tetrabonded. On the average they are forming two different bonding types. One type is the regular tetrahedral water-water bonding similar to that found in the ordinary ice Ih, whereas the other is a more dense nonregular tetrahedral bonding similar to that appearing in the ice II. The transformation between these two bonding forms is evidenced by FT-NIR experiment. The FT-NIR measurements were done for liquid water in the temperature range from $20^{\circ}C$ up to $80^{\circ}C$ in a wide extent of frequencies: 12 000 - 4000 $cm^{-1}$ /. Temperature dependent variations in the volume fraction of these two structures are directly related to the spectral changes. The absorbance variations are explored by means of the two-dimensional correlation spectroscopy (2DCOS), principal component analysis (PCA), curve fitting and second derivatives. The presence of the isosbestic points in a range of the combination and overtone transitions indicates that the experimental spectra are a superposition of two temperature independent components. One component of diminishing intensity with temperature increase, is assigned to a stronger hydrogen bonds occurred in the Ih type, whereas the second component showing an opposite behavior, one can attribute to a weaker H-bonds characteristic for the II type. The understanding of the hydrogen bonding network in the liquid water is very important in interpretation of the interaction between water and protein chain. The two-state model of water surrounding the protein surface could advance an understanding of the hydration process.

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액정올리고머에 있는 카보닐그룹들의 동적순서에 대한 2차원 라만상관분광법 연구 (Determining the Dynamic Sequence of Carbonyl Groups in a Rod-Coil Liquid Crystalline Oligomer Using Two-Dimensional Raman Correlation Spectroscopy)

  • 정갑상;유수창;한건옥
    • 대한화학회지
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    • 제48권3호
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    • pp.261-265
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    • 2004
  • 12-4라는 액정올리고머가 액정이 되는 과정에서 일어나는 동력학을 2차원 라만상관분광법을 이용하여 연구하였다. 분광법의 결과로부터 에틸그룹 옆에 붙어있는 자유 카보닐 그룹이 먼저 움직이고, 수소결합을 이룬 카보닐 그룹이 나중에 움직인다는 것을 알아내었다. 반면에 바이페닐그룹사이에 존재하는 자유 카보닐 그룹은 좀처럼 움직이지 않는 것으로 나타났다. 샘플-샘플상관분광법의 결과로부터는 액정이 되는 온도 135$^{\circ}C$보다 훨씬 낮은 온도인 50$^{\circ}C$에서 이미 카보닐 그룹의 움직임이 있음을 알 수 있었다.

2상류용 전류형식 전자기유량계 이론 및 환상류에서의 3차원 가상포텐셜 분포의 수치적 계산 (Theory of a Current-Type Electromagnetic Flowmeter for Two-Phase Flow and Numerical Computation of the 3D Virtual Potential Distributions for Annular Flow)

  • 오병도;김무환;안예찬
    • 대한기계학회논문집B
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    • 제27권6호
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    • pp.714-725
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    • 2003
  • The theory of the current-type electromagnetic flowmeter for a high temporal resolution was developed for two-phase flow measurements. To predict the output of the current-type flowmeter, the three-dimensional virtual potential distribution C and the newly introduced flow pattern coefficient f were derived and computed. The output of flowmeter depends on the liquid conductivity (sensitive to temperature) and flow configurations of the two-phase flow with the sinusoidal excitation over 100 Hz. The flow pattern coefficient was specially devised to separate the dependency on the flow configuration of the two-phase flow from that on the liquid conductivity which can be expressed with the calibration of single-phase flow. Using the finite difference method, the three-dimensional virtual potential distributions were computed for the electrode of finite size. By taking derivative of the virtual potential, the weight functions were evaluated and compared with existing analytic series solution for the point-electrode. There was a reasonable correspondence between the present and existing results. In addition, the flow pattern coefficients were evaluated for annular flows with various film thicknesses, and compared with the experimental results by the impedance spectroscopy. The numerical results agreed well with the experimental data.

Controlled Growth of Layered Silver Stearate on 2D and 3D Surfaces

  • Lee, Seung-Joon;Han, Sang-Woo;Kim, Kwan
    • ETRI Journal
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    • 제25권6호
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    • pp.517-522
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    • 2003
  • This investigation confirms that silver stearate consists of an infinite-sheet, two-dimensional, nonmolecular layered structure. Scanning electron microscopy, X-ray diffraction, and infrared spectroscopy reveal the following: plate-like morphology is identified from the SEM image, XRD peaks can be indexed to the (0k0) reflections of a layered structure, and infrared peaks show that alkyl chains are present in an all-trans conformational state with little or no significant gauche population. Based on these structural characteristics, we demonstrate that silver stearate, a prototype of layered organic-inorganic hybrid material, can be grown not only in a designed two-dimensional pattern but also in three-dimensionally ordered ways by using carboxyl-group terminated nanoparticles as a template.

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Growth and Structural Characterization of Single Layer Dichalcogenide $MoS_2$

  • Hwang, Jae-Seok;Kang, Dae-Joon
    • 한국진공학회:학술대회논문집
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    • 한국진공학회 2012년도 제42회 동계 정기 학술대회 초록집
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    • pp.575-575
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    • 2012
  • Synthesis of novel two dimensional materials has gained tremendous attention recently as they are considered as alternative materials for replacing graphene that suffers from a lack of bandgap, a property that is essential for many applications. Single layer molybdenum disulfide ($MoS_2$) has a direct bandgap (1.8eV) that is promising for use in next-generation optoelectronics and energy harvesting devices. We have successfully grown high quality single layer $MoS_2$ by a facile vapor-solid transport route. As-grown single layer $MoS_2$ was carefully characterized by using X-ray diffraction, Raman spectroscopy, field emission scanning electron microscopy and electrical transport measurement. The results indicate that a high quality single layer $MoS_2$ can be successfully grown on silicon substrate. This may open up great opportunities for the exploration of novel nanoelectronic devices.

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Impedance-Based Characterization of 2-Dimenisonal Conduction Transports in the LaAlO3/SrxCa1-xTiO3/SrTiO3 systems

  • Choi, Yoo-Jin;Park, Da-Hee;Kim, Eui-Hyun;Park, Chan-Rok;Kwon, Kyeong-Woo;Moon, Seon-Young;Baek, Seung-Hyub;Kim, Jin-Sang;Hwang, Jinha
    • 한국진공학회:학술대회논문집
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    • 한국진공학회 2016년도 제50회 동계 정기학술대회 초록집
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    • pp.171.2-171.2
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    • 2016
  • The 2-dimensiona electron gas (2DEG) layers have opened tremendous interests in the heterooxide interfaces formed between two insulating materials, especially between LaAlO3 and $SrTiO_3$. The 2DEG layers exhibit extremely high mobility and carrier concentrations along with metallic transport phenomena unlike the constituent oxide materials, i.e., $LaAlO_3$ and $SrTiO_3$. The current work inserted artificially the interfacial layer, $Sr_xCa_{1-x}TiO_3$ between $LaAlO_3$ and $SrTiO_3$, with the aim to controlling the 2-dimensional transports. The insertion of the additional materials affect significantly their corresponding electrical transports. Such features have been probed using DC and AC-based characterizations. In particular, impedance spectroscopy was employed as an AC-based characterization tool. Frequency-dependent impedance spectroscopy have been widely applied to a number of electroceramic materials, such as varistors, MLCCs, solid electrolytes, etc. Impedance spectroscopy provides powerful information on the materials system: i) the simultaneous measurement of conductivity and dielectric constants, ii) systematic identification of electrical origins among bulk-, grain boundary-, and electrode-based responses, and iii) the numerical estimation on the uniformity of the electrical origins. Impedance spectroscopy was applied to the $LaAlO_3/Sr_xCa_{1-x}TiO_3/SrTiO_3$ system, in order to understand the 2-dimensional transports in terms of the interfacial design concepts. The 2-dimensional conduction behavior system is analyzed with special emphasis on the underlying mechanisms. Such approach is discussed towards rational optimization of the 2-dimensional nanoelectronic devices.

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Purification and NMR studies on Phosphatase domain of UBLCP1

  • Oh, Hyo-Sun;Ko, Sung-Geon;Moon, Sun-Jin;Shin, Hang-Cheol;Lee, Weon-Tae
    • 한국자기공명학회논문지
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    • 제13권2호
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    • pp.126-134
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    • 2009
  • UBLCP1 is composed of Ubiquitin Like domain and RNA Polymerase II Phosphatase I domain. Phosphatase domain (25.9KDa) has been cloned into the E.coli using pET32a vector with TEV protease cleavage site and successfully purified as a monomer using affinity chromatography and histidine tag was cleaved with TEV protease for structural studies. Our results indicated that the Phosphatase domain showed well-defined folded structure based on data from one-dimensional and two-dimensional NMR spectroscopy. Data form circular dichroism also suggested that Phosphatase domain consisted of both ${\alpha}$ -helix and ${\beta}$ -sheet. This information will be used for detailed structural study of UBLCP1.