• Title/Summary/Keyword: Total fungi

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Restriction Analyses of PCR Amplified Partial SSU Ribosomal DNA to Distinguish Arbuscular Mycorrhizal Fungi from Other Fungi Colonizing Plant Roots

  • Lee, Jae-Koo;Tae, Moon-Sung;Eom, Ahn-Heum;Lee, Sang-Sun
    • Mycobiology
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    • v.31 no.2
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    • pp.68-73
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    • 2003
  • Roots of Glycine max and Miscanthus sinensis and soil samples were collected from various field sites at Goesan, Chungbuk in Korea. Microscopic observations of the roots indicated high colonization rates of both arbuscular mycorrhizal fungi(AMF) and other fungi. The partial small subunit of ribosomal DNA genes were amplified with the genomic DNA extracted from their roots by nested polymerase chain reaction(PCR) with universal primer NS1 and fungal specific primers AML Restriction fragment length polymorphism(RFLP) was analyzed using the combinations of three restriction enzymes, HinfI, AluI and AsuC21. Nucleotides sequence analysis revealed that ten sequences from Miscanthus sinensis and one sequence from Glycine max were close to those of arbuscular mycorrhizal fungi. Also, 33% of total clones amplified with NS31-AM1 primers from M. sinensis and 97% from G. max were close to Fusarium oxysporum or other pathogenic fungi, and they were successfully distinguished from AME Results suggested that these techniques could help to distinguish arbuscular mycorrhizal fungi from root pathogenic fungi in the plant roots. Especially, DNA amplified by these primers showed distinct polymorphisms between AMF and plant pathogenic species of Fusarium when digested with AsuC21.

Community of Endophytic Fungi from Alpine Conifers on Mt. Seorak

  • Ju-Kyeong Eo;Ahn-Heum Eom
    • Mycobiology
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    • v.50 no.5
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    • pp.317-325
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    • 2022
  • Endophytic fungi occupy various ecological niches, which reinforces their diversity. As few studies have investigated the endophytic fungi of alpine conifers, we focused on four species of alpine conifers in this study-Abies nephrolepis, Pinus pumila, Taxus cuspidata var. nana, and Thuja koraiensis-and examined them for endophytic fungi. A total of 108 endophytic fungi were isolated. There were four taxa in A. nephrolepis, 12 in P. pumila, 18 in T. cuspidata var. nana, and 17 in T. koraiensis; these were divided into five classes: Agaricomycetes (3.2%), Dothideomycetes (29.0%), Leotiomycetes (15.0%), Sordariomycetes (41.9%), and Orbiliomycetes (1.6%). The most prevalent fungi were Sydowia polyspora (22.7%) and Xylariaceae sp. (22.7%) in P. pumila, Phomopsis juglandina (16.1%) in T. cuspidate var. nana, and Thuja-endophytes sp. 1 (70.0%) in T. koraiensis. However, there was no dominant species growing in A. nephrolepis. Some host plants were analyzed using next-generation sequencing. We obtained 4618 reads for A. nephrolepis and 2268 reads for T. koraiensis. At the genus level, the top three endophytic fungi were Ophiostomataceae_uc (64.6%), Nectriaceae_uc (15.5%), and unclassified organism (18.0%) in A. nephrolepis and Nectriaceae_uc (41.9%), Ophiostomataceae_uc (41.8%), and Magnaporthaceae_uc (9.2%) in T. koraiensis. Our results show that there are different communities of endophytic fungi among different host plants, even if the host plants are in the same region. Such ecological niches are important in terms of the ecological restoration of alpine conifers.

Identification of Fungus from Dog and Diagnosis using PCR (개에서 분리한 진균의 동정과 PCR을 이용한 진단)

  • 장화석;문영찬;이상원;김휘율;김태종
    • Journal of Veterinary Clinics
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    • v.21 no.1
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    • pp.35-44
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    • 2004
  • This study was performed to examine the mycological features of canine skin. A total of 50 dogs with skin lesions were examined for dermatology from October, 2000 to April, 2001. The isolation rates of dermatophytes, yeast, filamentous fungi and superficial fungi were 36.4%, 13.5%, 35.3% and 13.6%. The dermatophytes isolated in dogs were Microsporum canins and Trichophyton mentagrophytes were 75% and 25%. The yeast and superficial fungi isolated in dogs were Candida albicans, Rhodntorula minnata, Candida ceferrii and Malassezia spp. were 16.7%. 16.7%, 16.7% and 50%. The filamentous fungi by Aspergillus funigatus, Aspergillus niger, Penicillum spp., Alternaria spp. were 12.5%, 12.5%, 50%, and 25%. In determine if polymerase chain reaction (PCR) could be applied for diagnosis of dermatophytes, yeast and filamentous fungi, control and clinical samples were tested. The size of specific PCR product in agarose gel was 340 bp for dermatophytes and 210 bp for yeast and filamentous fungi, respectively.

Fungi Colonizing Sapwood of Japanese Red Pine Logs in Storage

  • Kim, Jae-Jin;Ra, Jong-Bum;Son, Dae-Sun;Kim, Gyu-Hyeok
    • Mycobiology
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    • v.29 no.4
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    • pp.205-209
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    • 2001
  • The Korean sawmills have recently recognized the importance of prevention of fungal discoloration due to increased losses in revenue. Before establishing integrated control strategies of fungal discoloration, more complete knowledge about causal organisms is needed. As a first step, we initiated a through survey of fungi colonizing commercially important softwood(Pinus dens flora, Pinus koraiensis, and Pinus radiata) logs and lumber in Korea. In this paper we report results obtained from Japanese red pine(Pinus densiflora) log study. In summer 2000, fungi were isolated from Japanese red pine logs in storage, and identified based on their cultural and morphological characteristics. A total of 595 fungi were isolated, representing 21 genera and 30 species. Mold fungi, mostly Trichoderma species, were the most frequently isolating fungi, representing more than half of all isolates. Dematiaceous fungi represented approximately one fifth of the isolates, and Rhinocladiella atorvirens was the most abundant in all samples. Opiostoma species represented 7% of all isolates from cores planted on malt extract agar(MEA) and the incidence of these species doubled with the addition of streptomycin and cycloheximide to MEA. The results indicate that Japanese red pine sapwood is susceptible to colonization by a variety of fungal species. As a result, control strategies that concentrate on one fungus may have limited success because of interference from competing flora.

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Fungal Distribution of the Janggyeong Panjeon, the Depositories for the Tripitaka Koreana Woodblocks in the Haeinsa Temple

  • Hong, Jin Young;Kim, Young Hee;Lee, Jeong Min;Kim, Soo Ji;Park, Ji Hee
    • Journal of Conservation Science
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    • v.38 no.1
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    • pp.64-71
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    • 2022
  • Many investigations have been conducted on the biological damage and environmental conditions necessary to preserve the Janggyeong Panjeon and Daejanggyeongpan (woodblocks). We performed a survey on the concentration and diversity of airborne fungi in the Janggyeong Panjeon and compared them with the results of a survey from 2012. The temperature of the Beopbojeon building was slightly lower, while the relative humidity was higher than those found at the Sudarajang building. The concentration of airborne fungi in the Beopbojeon was 1.44-fold that of the Sudarajang. It was confirmed that the concentration and diversity of airborne fungi in the Janggyeong Panjeon differed depending on the sampling site. In total, 23 fungal genera were identified from the air samples, and 11 fungal and 1 bacterial genera were identified from the surface of the woodblocks. Among these, only five types of fungi were commonly distributed in the indoor air and surface of the Daejanggyeongpan; however, 58.3% of the fungi identified on the surface of the woodblocks were not observed in the in the air samples. The surface-dwelling fungi may accumulate dust to form microbial communities over time.

Correlation between Isolated Entomopathogenic Fungi and Soil Characteristics from Forest Areas of the Southwest Region in Korea (국내 서남 지역의 산림 토양 특성과 곤충병원성 진균과의 상관관계)

  • Kim, Hoe Ri;Kim, Hyngchan;Lee, Se Jin
    • Korean Journal of Organic Agriculture
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    • v.31 no.1
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    • pp.95-106
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    • 2023
  • Entomopathogenic fungi are one of the microorganisms distributed worldwide, and they inhabit not only insects but also soils of various regions such as agricultural land and forest areas. In this study, entomopathogenic fungi distributed in the soil of forest areas in Korea were isolated using the insect-baiting method, and the relationship between the distribution and diversity of entomopathogenic fungi and the physical/chemical characteristics of the soil was analyzed. The soils were collected from five forest areas in Korea, and a total of 42 entomopathogenic fungal isolates were isolated from the collected soils. Among them, Beauveria bassiana (42.9%) and Metarhizium anisopliae (45.2%) were mainly isolated. In particular, it was confirmed that the distribution of M. anisopliae varies depending on the total nitrogen (g/kg) and organic matter content (%) of the soil. The soils in forest areas in Korea have a low pH of 4-5. Among all isolates, >50% of entomopathogenic fungi were isolated from silt loam. This study suggests that it will be helpful in understanding the relationship between the distribution and diversity of entomopathogenic fungi and the physical and chemical characteristics of soil.

Distribution Characteristics of Airborne Fungi in a Partial Area of Seoul City (서울시 일부 지역의 대기 중 부유 진균의 분포 특성)

  • Kim, Ki-Youn;Kim, Dae-Keun
    • Journal of Environmental Health Sciences
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    • v.38 no.5
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    • pp.407-414
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    • 2012
  • Objectives: This study was performed to assess based on field investigation the distribution characteristics of airborne fungi in an area of Seongdong-gu, Seoul. Methods: Three sites, a living area, forest and traffic site, were selected for evaluation of monthly level of outdoor airborne fungi. An on-site survey was executed between January 2009 and December 2009. During the experimental period, air sampling was performed every month in the afternoon (2:00 pm-5:00 pm) using a cascade impactor. Results: Outdoor airborne fungi measured in Seoul, Korea over one year showed a concentration range from 850CFU $m^{-3}$ to 15,200CFU $m^{-3}$. The mean respirable fraction of outdoor airborne fungi was 67% compared to total concentration. Regardless of measurement site, there was no significant concentration difference in outdoor airborne fungi between periods of yellow dust and non-yellow dust (p>0.05). There was no significant correlation relationship between outdoor airborne fungi and atmospheric factors such as temperature and relative humidity. The predominant genera of airborne fungi identified were Aspergillus, Cladosporium, Paecilomyces and Penicillium. Conclusion: Monthly levels of outdoor airborne fungi were highest in April and November and lowest in August. In seasonal concentration distribution, the autumn showed the highest level of outdoor airborne fungi, followed by spring, summer and winter. In regional concentration distribution, the highest level of outdoor airborne fungi was generally found in the forest, followed by the living area and traffic site.

Taxonomic Investigations on Korean Higher Fungi ( I ) (한국산 고등균류의 분류학적 연구 ( I ))

  • Lim, Jeong-Han;Kim, Byong-Kak
    • Korean Journal of Pharmacognosy
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    • v.3 no.1
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    • pp.11-20
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    • 1972
  • To investigate the fungal flora in Korea, the basidiomycetes and other higher fungi were collected and examined. Five species Coriolus pinsitus, Hirshioporus fusco-violaceus, Hymenurhaete intricata, Merulius tremellosus, Steccherinum ochraceum, were newly added to the list of previously recorded Korean higher fungi, the total amounting to 386 species.

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Diversity of Arbuscular Mycorrhizal Fungi in Arable and Natural Soils in Korea

  • Eom, Ahn-Heum;Tae, Moon-Sung;Lee, Jae-Koo
    • The Korean Journal of Ecology
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    • v.27 no.3
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    • pp.179-184
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    • 2004
  • The diversity of arbuscular mycorrhizal fungi (AM) was investigated in cultivated and natural fold sites or chungbuk, Korea. soils were collected from rhizosphere or Sorghum bicolor, Fagopyrum esculentum and Glycine max in cultivated sites, and of Miscanthus sinensis, Glycine soja and Lespedeza cuneata in natural sites. Total 20 species of Glomalean fungi were found in this study. Species richness, species diversity and density of AM fungi were significantly lower in the arable sites. While only AM fungal spores belong to Glomus and Acaulospora were found in arable fold sites, more diverse fungal spores including Gigasporaceae were found in natural grasslands. AM fungal spore composition did not significantly differ among crop plant species. Results suggest that the agricultural practices were significantly influenced on AM fungal community structures and mycorrhizal developments.

Higher Fungi in the Northern Area of Kyungsangbuk-Do (경상북도(慶尙北道) 북부(北部) 지방(地方)의 고등(高等) 균류(菌類))

  • Cho, Duck-Hyun;Lee, Ji-Yul
    • The Korean Journal of Mycology
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    • v.7 no.1
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    • pp.1-7
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    • 1979
  • Higher fungi were collected in the northern area of Kyungsangbuk-Do (Mt. Sobaek, Youngju, Andong and Koun Temple) during the period from April, 1974 to October,1978 and were identified. The total number of fungi were as follow: two classes, 10 orders, 32 families, 86 genera, and 149 species. These contained higher fungi which were published by Lee and Cho, 1976 (referred below with a special mark). Among them, Psilocybe merdaria (Fr.) Ricken, Laccaria galerinoides Sing., Conocybe tenera Var. subovalis Kuhner and Helotium sulphurinum Quel. were new fungi in Korea.

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