• Title/Summary/Keyword: Taxonomic study

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Taxonomic Study of Bacillus coagulans by Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization Technique (DNA-DNA Hybridization에 의한 Bacillus coagulans의 분류학적 연구)

  • Chung, Chi-Kwan
    • Microbiology and Biotechnology Letters
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    • v.4 no.4
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    • pp.166-178
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    • 1976
  • Taxonomic study of 11 strains of Bacillus coagulans and 14 strains of 13 spccies of Bacillus by deoxyribonucleic acid (DNA)-DNA hybridization were conducted. Among the 11 strains of B. coagulans, 6 were isolated from soil and the rest were the authentic strains obtained from American Type culture collection (ATCC) or the Institute for Fermentation, Osaka (IFO). All strains were examined to confirm as they are expected species of B. coagulans by the methods of Cordon et al. according to Bergey's Manual (8th ed.). The intraspecific DNA homology indexes among the 11 strains of B. coagulans using strain ATCC 7050 as the standard ($^3$H labeled input DNA) showed 76% or, more, respectively. These findings accorded well with the results of the conventional taxonomic study according to the Bergey's Manual. The interspecific DNA homology indexes between B. coagulant strain ATCC 7050 and the type cultures of B. subtilis (168), B. licheniformis (IFO 12107), B. pumilus (IFO 12110), B. firmus (ATCC 14575), B. lentus (ATCC 10840), B. circulans (ATCC 4513), B. macelans (ATCC 8244), B. polymyxa (ATCC 842), B. sphaericus (ATCC 14577), B. brevis (ATCC 8246, IFO 12334), B. laterosporus (ATCC 64), and B. pantothenticus (ATCC 14576) respectively, showed 2 to 4%, while that of between B. coagulans ATCC 7050 and Escherichia coli K-12 was less than 1 %.

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On Mathematics Teachers' Recognition about Problem-Based Learning(PBL) Implementation : Taxonomic Analysis & Componential Analysis by using cards (문제중심학습(PBL)의 실행에 관한 수학교사의 인식 조사 : 카드 활용 면담을 이용한 분류체계 및 성분 분석을 중심으로)

  • Huh, Nan;Ha, Young-Hwa
    • Journal of the Korean School Mathematics Society
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    • v.14 no.2
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    • pp.143-161
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    • 2011
  • Mathematics PBL, which has recently attracted much attention, is a teaching and learning method to increase mathematical ability and help learning mathematical concepts and principles through problem solving using mathematical knowledge the students have. In spite of the attention, however, the implementations are yet significant. In this study, we worked to find the needs of mathematics teachers for mathematics PBL implementation. The methods of this study are taxonomic analysis and componential analysis by using cards depth interviewing. As a result, mathematics teachers' needs are to consider how to develop the mathematics PBL problems and how to make progress.

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Data-processing pipeline and database design for integrated analysis of mycoviruses

  • Je, Mikyung;Son, Hyeon Seok;Kim, Hayeon
    • International journal of advanced smart convergence
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    • v.8 no.3
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    • pp.115-122
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    • 2019
  • Recent and ongoing discoveries of mycoviruses with new properties demand the development of an appropriate research infrastructure to analyze their evolution and classification. In particular, the discovery of negative-sense single-stranded mycoviruses is worth noting in genome types in which double-stranded RNA virus and positive-sense single-stranded RNA virus were predominant. In addition, some genomic properties of mycoviruses are more interesting because they have been reported to have similarities with the pathogenic virus family that infects humans and animals. Genetic information on mycoviruses continues to accumulate in public repositories; however, these databases have some difficulty reflecting the latest taxonomic information and obtaining specialized data for mycoviruses. Therefore, in this study, we developed a bioinformatics-based pipeline to efficiently utilize this genetic information. We also designed a schema for data processing and database construction and an algorithm to keep taxonomic information of mycoviruses up to date. The pipeline and database (termed 'mycoVDB') presented in this study are expected to serve as useful foundations for improving the accuracy and efficiency of future research on mycoviruses.

Assessment of anatomical characteristics of the medicinal plant African cherry (Prunus africana) for its accurate taxonomic identification

  • Komakech, Richard;Yang, Sungyu;Song, Jun Ho;Choi, Goya;Kim, Yong-Goo;Okello, Denis;Omujal, Francis;Kyeyune, Grace Nambatya;Matsabisa, Motlalepula Gilbert;Kang, Youngmin
    • Journal of Plant Biotechnology
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    • v.49 no.2
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    • pp.139-144
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    • 2022
  • The genus Prunus (family: Rosaceae) consists of over 400 plant species and exhibits vast biodiversity worldwide. Given the wide distribution of this genus, its taxonomic classification is important. Anatomical characteristics are conserved and stable and can therefore be used as an important tool for the taxonomic characterization of plants. Therefore, this study aimed to assess and document the anatomical characteristics of the leaf, stem, and seed of P. africana using micrographs and photographs for possible use in the identification, quality control, and phylogenetic analysis of the species. The anatomical sections of a young stem revealed a cortex consisting of isodiametric parenchyma cells, druse crystals, primary vascular bundles, and pith. The mature stem bark majorly consisted of the rhytidome, with the periderm densely arranged in multiple layers; a cluster of stone cells; and sclerenchyma. The leaf sections were hypostomatic, with stomata sizes ranging from 18.90-(22.34)-26.90 × 15.41-(18.40)-21.22 ㎛. The leaf sections showed the presence of characteristic druse crystals, vascular bundles, and mesophyll layers. The pericarp contained the epicarp, mesocarp, and endocarp, with their thickness being approximately 350-400, 300-350, and 30-50 ㎛, respectively. In addition, it contained a seed testa with a thickness of approximately 50-60 ㎛. The morphological and anatomical characteristics observed in P. africana leaves, stems, and seeds in this study could serve as useful data for the taxonomic identification of this species.

Taxonomic Studies of the Lauraceae in Korea - Morphology of Inflorescence - (한국산 녹나무과 식물의 분류학적 연구 - 화서의 형태 -)

  • 선병윤
    • Journal of Plant Biology
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    • v.29 no.4
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    • pp.329-340
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    • 1986
  • This study is attemped to discuss the taxonomic significances as have been raised up to now in the study of Lauraceous inflorescence. Lauraceous inflorescences are recognized as panicle, umbel, dichasium, or fascicle by various investigators. Reconsidering the inflorescence or existence of involucre, which has been accepted as important character in the present classification system, it is assumed that the study about them has not so far carried out a deliberate analysis over inflorescent morphology, nor has recognized the existence of involucre. Furthermore, all the materials examined in this study have fugacious or persistent involucres which are leafy, scaly or membraneous. Therefore, it was found that the kinds, fugacity or persistency of involucres are significant in the problems of classification of Laureaceae. Korean Lauraceous inflorescence has evolved into the direction of continuous reduction in its peduncle: from compound dichasium to capitate umbel.

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Biosystematic Study on the Genus Viola in Korea - Comparative Morphology of the Viola albida Complex - (한국산 제비꽃속의 종분화론적 연구 - 태백제비꽃군의 비교형태학적 연구 -)

  • 김경식
    • Journal of Plant Biology
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    • v.34 no.3
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    • pp.229-238
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    • 1991
  • The main objective of this study was to clarify the taxonomic status and the speciation mechanism of Viola albida complex in Korea. The complex includes three very closely related taxa, taxonomic ranks of which are much in dispute. These taxa in the complex are sympatric in distribution, and they are very similar in most morphological characteristics. Comparative morphological analyses revealed that they can be distinguished on the basis of leaf shape, although they show complicated patterns of variation in leaf shape. The variation of leaf shape in each taxon appeared to be maintained through developmental process, and extensive cleistogamy and vegetative reproduction in these taxa are suggested as the mechanisms maintaining the variation. Genetic variation in this complex was monomorphic in all 14 loci examined. Palynological study also showed that these taxa have the same pollen morphology. These results strongly suggested that they should be recognized as varieties of V. albida; var, albida, var. chaerophylloides, and var. takahashii. The results also suggested that some individuals that can be assigned to var. takahashii might be hybrids between var. albida and var. chaerophylloides.

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Taxonomic Study on the Lichen Genus Xanthoparmelia (Ascomycotina, Parmeliaceae) in Korea

  • Wang, Xin Yu;Koh, Young-Jin;Hur, Jae-Seoun
    • Mycobiology
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    • v.36 no.4
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    • pp.203-210
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    • 2008
  • In previous studies investigating the genus Xanthoparmelia, thirteen different species have been reported from South Korea alone. However, there currently has been no revisional study performed until now. To explore the genus Xanthoparmelia, a phenotypic analysis was performed based on morphological, anatomical and chemical characters, while an investigation of Xanthoparmelia phylogeny was based on nuclear ribosomal (nr) DNA ITS sequences. A thorough examination of the specimens deposited in the Korean Lichen Research Institute (KoLRI) confirmed that eight species of Xanthoparmelia occur inside South Korea. Our analysis further confirmed the colors of the lower surface and medullar chemistry are important taxonomic characters in Xanthoparmelia. This study also presents a detailed description of each species and a key to the genus.