• 한국동물학회지
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• 제24권2호
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• pp.91-98
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• 1981

Deer mice, Peromyscus maniculatus, 의 성체 571마리의 30개 morphometric 형질들을 이용한 cluster analyses에서 두가지의 similarity 행렬식 (Average taxonomic distance와 Correlation coefficient 행렬식)을 이용한 dendrogram이 서로 다르다는 것이 확인되었다. 이들 두가지의 행렬식 중에서 taxarks의 형태적인 유연관계를 나타내는 하나의 dendrogram만을 선택하기 위한 한 객관적방법이 제안되었다. 즉 principal component analysis에 의한 결과를 비교할 표준결과로 이용하는 방법이다.

• Journal of Plant Biology
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• 제28권3호
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• pp.179-190
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• 1985

A review of taxonomic treatments of the amentiferous plant taxa reveals diverse classification. It appears to be necessary to investigate new characteristics and attempt to determine the significance of these characteristics in terms of amentiferous systematics. Serological techniques have been empolyed in a systematic investigation of selected taxa of the Amentiferae: Betulaceae, Fagaceae, Juglandaceae, Myricaceae, and Salicaceae. Data by qualitative analysis of pollen proteins, double immunodiffusion and conventional immunoelectrophoresis, have proved to be valuable in delimitation of taxa tested. When the antisera against Alnus hirsuta, Betula platyphylla var. japonica, Quercus aliena, Q. dentata, Q. glauca were tested; Alnus and Betula have the greatest protein similarity to one another; and next to the rest of betulaceous genera. Relatively strong protein similarity obtained with most representatives of Quercus and Fagus when reacted with antisera against Alnus and Betula is very much in contrast to the weak protein similarity obtained for the genera of Juglandaceae, Myricaceae, particularly of Salicaceae Tested with the same antisera. When Quercus antisera were used for various genera, the weakest protein similarity was obtained with Populus.

• 생명과학회지
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• 제11권2호
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• pp.133-137
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• 2001

The molecular taxonomic relationship of nine species in the genus Moniliella Stolk & Dakin and Trichosporonoides Haskins & Spencer and six species of other yea나-like fungi was examined by sequencing analysis of large subunit rDNA D1/D2 variable domain. The fifteeen species fell into two major groups corresponding with their genetic relationships. The nine species of the genus Moniliella and Trichosporonoides were placed at the same cluster. similarity values based on the D1/D2 domain sequences were 45.4-100% among species of genus Moniliella, 45.2-84.4% among genus Trichosporonoides species, and 45.6-90.1% among species of genus Moniliella and Trichosporonoides. Identical sequence similarity was observed between M. suaveolens var. nigra and M. suaveolens. A colse relationship of M. mellis. and M. acetoabutens is observed. The result of this study provided and insight into the genetic origins of genus Moniliella and Trichosporonoides species as well as their genetic relationships. Genus Moniliella and Trichosporonoides are closely related to each other based on sequence analysis of the large subunit rDNA D1/D2 region and we suggest combination of the genus Moniliella and Trichosporonoides to single genus.

• Journal of Microbiology
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• 제40권4호
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• pp.335-339
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• 2002

Partial sequences of 16S rRNA gene of five chroococcalian blue-green algal strains, Aphanothece nidulans KCTC AG10041, Aphanothece naegelii KCTC AG10042, Microcystis aeruginosa KCTC AG10159, Microcystis ichthyoblabe KCTC AG10160, and Microcystis viridis KCTC AG10198, which were isolated from water from the Geumgang River, were determined and were inferred their phylogenetic and taxonomic positions among taxa of order Chroococcales. Most taxa of Chroococcales whose partial 16S rRNA gene sequences were aligned in this study, are clustered with other related taxa. Aphanothece nidulans KCTC AG10041 and Aphanothece naegelii KCTC AG10042 made a cluster with other European species of these genera, which supported 100% of the bootstrap trees with a very high sequence similarity (97.4-99.4%) in this study. Three strains, Microcystis aeruginosa KCTC AG10159, M. ichthyoblabe KCTC AG10160, and M. viridis KCTC AG10198, formed a cluster with other Microcystis spp. supported 100 % of the bootstrap trees with a similarity of 97.0-99.9% except for two strains. However, this phylogentic tree made no resolution among the species of Microcystis spp. The topology of the tree reconfirmed the taxonomic status of three species of Microcystis, identified in this study based on the morphology, as three colonial types of Microcystis aeruginosa com. nov. Otsuka et al. (1999c). The genera of chroococcalian cyanophytes are heterogeneously clustered in these sequence analyses. We suggest that more molecular studies on the genera of Chroococcales with reference strains, widely collected from restricted geographic or environmental ranges, get accurate taxonomic or phylogenetic determinations.

• ALGAE
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• 제35권3호
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• pp.293-301
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• 2020

The applications of DNA barcoding have a wide range of uses, such as in taxonomic studies to help elucidate cryptic species and phylogenetic relationships and analyzing environmental samples for biodiversity monitoring and conservation assessments of species. After obtaining the DNA barcode sequences, sequence similarity-based homology analysis is commonly used. This means that the obtained barcode sequences are compared to the DNA barcode reference databases. This bioinformatic analysis necessarily implies that the overall quantity and quality of the reference databases must be stringently monitored to not have an adverse impact on the accuracy of species identification. With the development of next-generation sequencing techniques, a noticeably large number of DNA barcode sequences have been produced and are stored in online databases, but their degree of validity, accuracy, and reliability have not been extensively investigated. In this study, we investigated the extent to which the amount and types of erroneous barcode sequences were deposited in publicly accessible databases. Over 4.1 million sequences were investigated in three largescale DNA barcode databases (NCBI GenBank, Barcode of Life Data System [BOLD], and Protist Ribosomal Reference database [PR2]) for four major DNA barcodes (cytochrome c oxidase subunit 1 [COI], internal transcribed spacer [ITS], ribulose bisphosphate carboxylase large chain [rbcL], and 18S ribosomal RNA [18S rRNA]); approximately 2% of erroneous barcode sequences were found and their taxonomic distributions were uneven. Consequently, our present findings provide compelling evidence of data quality problems along with insufficient and unreliable annotation of taxonomic data in DNA barcode databases. Therefore, we suggest that if ambiguous taxa are presented during barcoding analysis, further validation with other DNA barcode loci or morphological characters should be mandated.

• 한국어류학회지
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• 제27권3호
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• pp.165-182
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• 2015

쏨뱅이아목 (Scorpaenoidei) 어류에 속하는 꼼치과 (Liparidae) 어류는 형태적으로 유사하고 오동정 가능성이 크며 체색과 몸의 상대적인 크기 변이가 심하여 분류학적으로도 상당히 혼란스러운 분류군이다. 따라서, 본 연구는 꼼치과 어류의 자원변동을 이해하고 자원관리를 위해 국내 보고된 3속 10종을 대상으로 분자계통 및 분류학적 재검토를 수행하였다. 미토콘드리아DNA COI 영역과 핵DNA RAG2 영역의 염기서열을 이용한 분자계통 분석 결과, 물미거지가 분홍꼼치와 가깝게 유집되는 mtCOI 계통 결과를 제외하면 3속 (분홍꼼치속, 물미거지속, 꼼치속)이 대등한 단계통성을 나타내었다. Gilbert and Burke (1912)는 L. ochotensis와 구분되는 한국산 미거지를 L. ingens로 신종 보고하였으나, 본 연구에서 한국산 미거지는 일본산 및 러시아산 L. ochotensis와 형태 및 분자에서 잘 일치하였으므로 한국산 미거지의 학명을 L. ingens에서 L. ochotensis로 변경한다.

• The Plant Pathology Journal
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• 제26권1호
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• pp.83-89
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• 2010

Taxonomic position of 46 Korean isolates of Rhizoctonia solani which were classified into nine intraspecific groups by anastomosis and cultural characteristics was analyzed by randomly amplified polymorphic DNA (RAPD) and sequence analyses of the internal transcribed spacer (ITS) regions of ribosomal DNA. All the isolates within each group showed highly similar band patterns in RAPD. The ITS regions of the isolates within the same groups showed a high level of sequence similarity above 96.0% whereas similarities among different groups were below 94.4%. When compared with several reference strains of R. solani from foreign countries, all the Korean isolates were clustered with the foreign isolates belonging to the same groups in the phylogenetic tree. All six Korean strains of AG-4 were identified as HG-1 out of 3 subgroup of AG-4. We discussed taxonomic position of Korean isolates of R. solani and showed that sequence analysis with ITS regions could be a rapid and useful method for identification of intraspecific group of R. solani.

• 농업과학연구
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• 제16권2호
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• pp.163-168
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• 1989

분리(分離)된 저영양세균(低營養細菌)중, 질소고정균(窒素固定菌)과 메타놀 이용균(利用菌)의 대부분이 분류학상(分類學上)새로운 균(菌)으로서 특정지을 수 있었다. 분리된 질소고정균의 경우 형태적 생리적인면에서 Azospirillum에 대응하는 균이라 생각되어 졌으나, 균체지방산조성 및 키논종(種)에 있어서 명확한 차이점을 보여 Azospirillum 속의 새로운 균주로써 추정되었다. 메타놀이용균중 부속기갖는 세포로된 균주들은 prosthecate bacteria(Hyponycrobium sp.)에 대응하는 균이라고 추정되어졌다. 그이외의 regular irregular rods를 나타내는 메타놀이용균에 대해서는 균체지방산조성면에 있어서 서로 다르다는 것이 주목되어져 균체지방산조서의 분석결과(分析結果)를 갖고 화학분류(化學分類)의 측면에서 재검토한 결과 유사도(類似度) 85-90% level에서 8개 cluster로 나뉘어졌다. 일부, cluster에 속하는 균주는 Pseudomonas sp.와 유사한 균으로 추정되었으며, 그 외의 균주들에 대해서는 분류학적 검토가 더욱더 필요로 한다.

• 한국언어정보학회지:언어와정보
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• 제12권1호
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• pp.27-65
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• 2008

This paper presents a set of methodologies for aligning hypernym-hyponym noun pairs between Korean and English, based on the EuroWordNet approach. Following the methods conducted in EuroWordNet, our approach makes extensive use of WordNet in four steps of the building process: 1) Monolingual dictionaries have been used to extract proper hypernym-hyponym noun pairs, 2) bilingual dictionary has converted the extracted pairs, 3) Word Net has been used as a backbone of alignment criteria, and 4) WordNet has been used to select the most similar pair among the candidates. The importance of this study lies not only on enriching semantic links between two languages, but also on integrating lexical resources based on a language specific and dependent structure. Our approaches are aimed at building an accurate and detailed lexical resource with proper measures rather than at fast development of generic one using NLP technique.

• 식물분류학회지
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• 제46권2호
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• pp.175-186
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• 2016

더위지기 및 근연분류군은 분류학적 위치 및 학명에 대하여 많은 이견이 있어왔다. 이에 본 연구는더위지기 및 근연분류군인 털산쑥, 흰산쑥의 외부형태학적 연구를 바탕으로 정확한 학명을 부여하고 분류학적 위치를 재검토하기 위하여 실시되었다. 원기재와 기준표본을 비교 및 분석한 결과, 털산쑥(A. freyniana f. discolor)과 흰산쑥(A. freyniana f. vestita)은 잎에서 털의 분포 양상, 지리적 분포, 체세포염색체 수 및 화분의 자상돌기 기부의 연결 유무 등의 특징에 의해 A. sacrorum var. sacrorum와 A. sacrorum var. incana으로 각각 이명 처리하였으며, A. gmelinii의 학명으로 잘못 사용되어온 더위지기(A. iwayomogi)의 학명은 A. sacrorum그룹과의 형태학적 유사성을 바탕으로 신조합명인 A. sacrorum var. iwayomogi (Kitam.) M. S. Park & G. Y. Chung으로 처리하였다. 또한, 이들의 기재, 도해 및 검색표를 제시하였다.