• The Plant Pathology Journal
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• v.27 no.1
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• pp.1-7
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• 2011

Colletotrichum panacicola isolates were obtained from anthracnose lesions of Korean ginseng and compared with four Colletotrichum species in morphology, molecular phylogeny and pathogenicity. Based on morphological characteristics, C. panacicola was easily distinguished from Colletotrichum gloeosporioides but not from Colletotrichum higginsianum, Colletotrichum destructivum and Colletotrichum coccodes. A phylogenetic tree generated from ribosomal DNA-internal transcribed spacer sequences revealed that C. panacicola is remarkably distinguished from C. gloeosporioides and C. coccodes but not from C. higginsianum and C. destructivum. However, molecular sequence analysis of three combined genes (actin + elongation factor-$1{\alpha}$ + glutamine synthatase) provided sufficient variability to distinguish C. panacicola from other Colletotrichum species. Pathogencity tests showed that C. panacicola is pathogenic to Korean ginseng but not to other plants. These results suggest that C. panacicola is an independent taxon distin-zguishable from C. gloeosporioides and other morphologically similar Colletotrichum species.

• Animal Systematics, Evolution and Diversity
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• v.2 no.1
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• pp.79-92
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• 1986

Electrophoretic method is and morphometric analysis were used to examine genetic and phenetic variation among 16 populations of Rhabdophis tigrina and to clarify the subspecific status of R.t.tigrina and R.t. lateralis in Korea. The degree of genic variation based on 23 presume loci was moderate and was similar to those found for other vertebrates. Interpopulation levels of genic differentiation were slight for all populations studied and overall genetic similarities were =0.970. The number of ventral and subcaudal scales showed clinal variation with increasing tendency in numbers toward south . Discriminant function analysis based on six morphometric characters revealed that there were no morphometric differentiation between two subspecies, therefore it was concluded that they were same taxon and R.t. lateralis (Berthold, 1859) should be treated as synonym of R. t. tigrina(Boie, 1826)

• Korean Journal of Plant Taxonomy
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• v.39 no.2
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• pp.120-123
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• 2009

A naturalized species from Korean flora, Cymbalaria muralis P. Gaetrn. (Scrophulariaceae), is firstly recorded from a well-drained bare field at Bulgwang-dong, Eunpyong-gu, Seoul city. The genus Cymbalaria Hill has not recorded in Korea and C. muralis is easily distinguished from the other species of Scrophulariaceae by palmately-lobed leaves, vine-like stems and cylindrical spur at the base in its flower. The new Korean name is 'Deong-gul-he-ran-cho'. Descriptions, illustrations and photographs of this species are given.

• Korean Journal of Plant Taxonomy
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• v.39 no.3
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• pp.125-129
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• 2009

The genetic diversity plays a significant role in determining a species' survival and perseverance. Endangered species often lack genetic variation, which makes them vulnerable to numerous dangers of extinction including selection, genetic drifts and human interference. Knowing an endangered species' genetic background greatly enhances conservation efforts since it reveals why, what and how to conserve that species. Cotoneaster wilsonii is an endangered plant species endemic to Ulleung island, but not enough genetic research has been done on this taxon for its effective conservation plans. In this study, three populations of C. wilsonii in Ulleung island underwent allozyme analysis through starch gel electrophoresis. 10 loci were analyzed and F-statistics was calculated. Overall data indicated that C. wilsonii possessed low genetic diversity with intense inbreeding, heterozygote deficiency and low differentiation among populations. These results implied that C. wilsonii was recently introduced to the Ulleung island from ancestor species, and did not have much time to differentiate. Current status of C. wilsonii habitats is very fragile and vulnerable, with increasing tourism constantly threatening the species' survival. It is very likely that C. wilsonii will become extinct in near future unless organized conservation protects its populations and genetic diversity.

• Korean Journal of Plant Taxonomy
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• v.47 no.3
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• pp.207-221
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• 2017

Thymelaeaceae in Korea includes ten species in five genera (Daphne, Diarthron, Edgeworthia, Stellera, and Wikstroemia). This study investigated the morphology of these species using herbarium specimens and fresh materials obtained during fieldwork to understand the variation level and to delineate each taxon in the family. Our comparative morphological analysis showed that the Korean taxa in Thymelaeaceae were easily distinguished based on their morphologies. It is easy to distinguish Daphne from Wikstroemia when the Korean taxa are considered. However, Daphne genkwa is morphologically similar to Wikstroemia based on the leaf arrangement, pubescence of the leaves, and the ovary shape. The results here suggest that further systematic studies of the Daphne group using more data are necessary.

• Animal Systematics, Evolution and Diversity
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• no.nspc5
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• pp.81-104
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• 2005

Based on our insect collecting trip to the Is. Jin-do, Jeollanam-do Province from June 29 to July 1, 2005, a total of 573 lepidopterous species belonging to 37 families are reported, with adding 122 species new to the locality During our survey, the most dominant species was Cryptolechia malacobyrsa Meyrick (Oecophoridae), followed by Sandrabatis crassiella Ragonot (Pyralidae) and Yponomeuta tokyonellus Matsumura(Yponomeutidae), and the family Noctuidae (165 spp.) was the most diverse taxon in species number. We here also discuss the species representing the climatic feature in the island and compare the species diversity with those of other two major islands in Korea, Is. Geoje-do and Is. Jeju-do. Among the species recognized in this study, two species, Epilepia dentata (Matsumura and Shibata) and Meganola costalis (Staudinger) are recorded in Korea for the first time, in spite of the presence of previous notes on the species which is invalid. The adults and genitalia of the two species are illustrated and described briefly.

• Journal of Environmental Science International
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• v.27 no.11
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• pp.1007-1021
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• 2018

Community dynamics of benthic macroinvertebrates and biological evaluation of water quality were investigated at Gigyecheon of Pohang and Gyeongju, Korea. The survey was carried out at 8 sites from May to October, 2017. As a result, total of 104 species under 54 families, 15 orders, 8 classes in 4 phyla with 5,052 individuals were revealed. The number of species was the most abundantly identified in aquatic insects, 76 species under 34 families, 6 orders. Among them, the order Odonata was the most abundant taxon as 21 species(20.2%). The most abundant individuals were collected in the phylum Mollusca as 1,453 individuals(28.8%). Various species appeared dominantly at each site by season, and the most dominant species was Caridina denticulata denticulata belonging to the class Malacostraca with 0.08 of dominance index. According to the results of community structure analyses, the diversity and richness indices were the highest at site II, the evenness index was the highest at site I, and the dominance index was the highest at site IV. The number of species and individuals of gathering collectors were the highest among functional feeding groups. Those of sprawlers were the highest among habitat orientation groups. The ESB showed a tendency to change according to season and site, and it was the highest in May at most surveyed sites. The KSI was also somewhat fluctuated according to season and site. From these indices, average biological water quality was evaluated as class II.

• Genomics & Informatics
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• v.16 no.4
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• pp.23.1-23.5
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• 2018

Virus taxonomy was initially determined by clinical experiments based on phenotype. However, with the development of sequence analysis methods, genotype-based classification was also applied. With the development of genome sequence analysis technology, there is an increasing demand for virus taxonomy to be extended from in vivo and in vitro to in silico. In this study, we verified the consistency of the current International Committee on Taxonomy of Viruses taxonomy using an in silico approach, aiming to identify the specific sequence for each virus. We applied this approach to norovirus in Caliciviridae, which causes 90% of gastroenteritis cases worldwide. First, based on the dogma "protein structure determines its function," we hypothesized that the specific sequence can be identified by the specific structure. Firstly, we extracted the coding region (CDS). Secondly, the CDS protein sequences of each genus were annotated by the conserved domain database (CDD) search. Finally, the conserved domains of each genus in Caliciviridae are classified by RPS-BLAST with CDD. The analysis result is that Caliciviridae has sequences including RNA helicase in common. In case of Norovirus, Calicivirus coat protein C terminal and viral polyprotein N-terminal appears as a specific domain in Caliciviridae. It does not include in the other genera in Caliciviridae. If this method is utilized to detect specific conserved domains, it can be used as classification keywords based on protein functional structure. After determining the specific protein domains, the specific protein domain sequences would be converted to gene sequences. This sequences would be re-used one of viral bio-marks.

• ALGAE
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• v.35 no.4
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• pp.349-359
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• 2020

Specimens of Umbraulva with greenish iridescent were collected in the subtidal zone of Jeju Island, Korea. To investigate these collections, plastid rbcL and tufA sequencing of six greenish iridescent specimens, including four Umbraulva japonica, were analyzed. Phylogenetic analysis of a concatenated multigene alignment found that the greenish iridescent specimens belonged to a yet undescribed taxon in the genus Umbraulva. We herein propose the name Um. yunseulla sp. nov. for this specimens. Juveniles of Um. yunseulla sp. nov. resemble the generitype Um. japonica in appearance, showing globular to subglobular and funnel-shaped habits, but the blades of this new species are not split longitudinally like those of Um. japonica. Although the multigene phylogenetic tree showed the polyphyletic clade of Umbraulva with respect to the genus Ryuguphycus, Um. yunseulla sp. nov. formed a clade with Um. japonica and Um. amamiensis by weak bootstrap support. These findings, Um. yunseulla sp. nov., highlight the importance of studying the biodiversity of subtidal habitats from Jeju Island, Korea and further emphasize the need for investigations of macroalgae in the mesophotic zone around the Korean peninsula.

• Korean Journal of Plant Taxonomy
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• v.51 no.1
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• pp.109-114
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• 2021

Veronica nakaiana Ohwi (Plantaginaceae) is an endemic taxon on Ulleungdo Island, Korea. We report the second complete chloroplast genome sequence of V. nakaiana. Its genome size is 152,319 bp in length, comprising a large single-copy of 83,195 bp, a small single-copy of 17,702 bp, and a pair of inverted repeat regions of 25,711 bp. The complete genome contains 115 genes, including 51 protein-coding genes, four rRNA genes, and 31 tRNA genes. When comparing the two chloroplast genomes of V. nakaiana, 11 variable sites are recognized: seven SNPs and four indels. Two substitutions in the coding regions are recognized: rpoC2 (synonymous substitution) and rpl22 (nonsynonymous substitution). In nine noncoding regions, one is in the tRNA gene (trnK-UUU), one is in the intron of atpF, and seven are in the intergenic spacers (trnH-GUG~psbA, trnK-UUU, rps16~trnQ-UUG, trnC-GCA~petN, psbZ~trnG-GCC, ycf3~trnS-GGA, ycf4~cemA, and psbB~psbT). The data provide the level of genetic variation in V. nakaiana. This result will be a useful resource to formulate conservation strategies for V. nakaiana, which is a rare endemic species in Korea.