• Journal of Wetlands Research
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• v.20 no.4
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• pp.322-329
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• 2018

In this study the community characteristics of benthic macroinvertebrates distributed in stream of Gaya Mountain were figured out and the correlation with the physicochemical water quality factors were calculated. During the study period, total 4 phyla, 6 classes, 13 orders, 36 families, 100 species of benthic macroinvertebrates were recorded. Ephemeroptera were the most dominant followed by Trichoptera, Plecoptera, Diptera, Non-insecta, Hemiptera, and Odonata. The overall dominant species was Cincticostella levanidovae by dominance rate in 17.72%, subdominant species was Hydatophylax nigrovittatus by dominance rate in 6.15%. The biotic indices showed the diversity index 5.17, richness index 12.44, dominant index 0.24 and evenness index 0.78, there is no absolutely dominant benthic macroinvertebrates in the stream of Gaya Mountain. We identified the correlation between the species number and individuals of main taxa and the physicochemical water quality factors. Ephemeroptera and Plecoptera showed a negative correlation with water temperature, but they represented a positive correlation with the dissolved oxygen. This results suggest that water temperature and dissolved oxygen are important physicochemical water quality factors affects the distribution of Ephemeroptera and Plecoptera, the indicators of clean water stream.

• Journal of Life Science
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• v.29 no.5
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• pp.580-587
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• 2019

Benthic macroinvertebrates were analyzed in March, June, September, and December 2018 to evaluate water quality in the Songji River in Sacheon-ci, Korea. The identified benthic macroinvertebrates included 447 individuals belonging to 20 species, 18 families, 12 orders, 5 classes, and 3 phyla. Various ecological parameters were estimated for evaluation of the river status. The total ecological score of benthic macroinvertebrate community (TESB) varied from 17 (Station D) to 41 (Station A). The saprobic index and ecological score of benthic macroinvertebrate community (ESB) for the evaluation of river status revealed a water quality evaluation at Station A of II (oligosaprobic), indicating some satisfactory water protection. The benthic macroinvertebrate index (BMI) varied from 25.207 (Site C) to 39.348 (Station A). The evaluation of the river status at Stations C and D was polysaprobic, and sensitive taxa were absent. The mean Shannon-Weaver index (H') of diversity varied from 1.288 (Station D) to 2.250 (Station A). The classification of saprobity based on H' was ${\beta}$-mesosaprobic at Station A and ${\alpha}$-mesosaprobic at the other stations. The value of geometric density was varied from 1.229 (Station A) to 2.071 (Station D), with a mean of 1.582. An artificial load is being added to this river. One of load is the rectal river construction which flows straight through the river physics. Thus, the environment of living organisms deteriorates due to insufficient water. In order to secure the quality of the Songji River and a good environmental habitat, several low-height stepped-beam structures are required.

• Journal of Microbiology and Biotechnology
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• v.31 no.9
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• pp.1210-1217
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• 2021

Two gram-negative, catalase-positive, strictly aerobic, and white colony-forming bacteria, strains H242^T and B156^T, were isolated from soil in South Korea. Cells of strain H242^T were oxidase-positive and non-motile short rods, while those of strain B156^T were oxidase-negative and long non-motile rods. Ubiquinone-8 was identified as the sole isoprenoid quinone in both strains. C_16:0, cyclo-C_17:0, andsummed feature 3 (C_16:1 ω7c and/or C_16:1 ω6c) and phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were identified in both strains as the major cellular fatty acids and polar lipids, respectively. The DNA G+C contents of strains H242^T and B156^T were 69.4 mol% and 69.3 mol%, respectively. Phylogenetic analyses based on 16S rRNA and 92 concatenated core gene sequences revealed that strains H242^T and B156^T formed distinct phylogenic lineages from other Ramlibacter type strains. The DNA-DNA hybridization (DDH) value between strains H242^T and B156^T was 24.6%. Strains H242^T and B156^T were most closely related to Ramlibacter ginsenosidimutans BXN5-27^T and Ramlibacter monticola G-3-2^T with 98.4% and 98.6% 16S rRNA gene sequence similarities, respectively. Digital DDH values between strain H242^T and R. ginsenosidimutans and between strain B156^T and R. monticola were 23.5% and 26.1%, respectively. Phenotypic, chemotaxonomic, and molecular analyses indicated that strains H242^T and B156^T represent two novel species of the genus Ramlibacter, for which the names Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., respectively, are proposed. The type strains of R. terrae and R. montanisoli are H242^T (=KACC 21667^T=JCM 33922^T) and B156^T (=KACC 21665^T=JCM 33920^T), respectively.

• Korean Journal of Plant Taxonomy
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• v.50 no.4
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• pp.377-384
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• 2020

Korean Sedum formosanum N. E. Br. (Ju-geog-nip-gaet-bi-reum in Korean) was first recorded in 1887, 133 years ago. Since then, the species has not been collected and its current state has remained unclear. However, these plants were collected in 2020 and the corresponding taxonomic entity and distribution status were revealed. It is known to be distributed only in the southern region of Japan, the northern islands of the Philippines, and in Taiwan, with Taiwan being the collection site of the type specimen. However, on the basis of the findings of the fourth national natural environment survey, it has recently been established that this plant also grows in the crevices of rocks along the seashores of the Korean islands of Hataedo Island and Sangtaedo Island, Sinan-gun, Jeollanam-do. S. formosanum inhabiting Korea is a large succulent biennial that can attain a height of up to 65 cm and differs from its congeneric species in having erect follicles during the fruiting period. Notably, among the Korean Sedum species, S. formosanum is most similar to S. tosaense, although it can be distinguished from this species with respect to its monomorphic leaves that have rounded apices, and it also bears separate flowering and sterile stems. In this paper, we present a description and photographs of the Korean S. formosanum, indicate the differences between this and related species, and provide a key to related taxa.

• Korean Journal of Plant Taxonomy
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• v.50 no.4
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• pp.453-474
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• 2020

Here, we present an updated checklist based on voucher specimens of vascular plants for Gasan Mt. which is located in Chilgok-gun, Gyeongsangbuk-do, South Korea. The list includes 322 taxa in 212 genera and 81 families of vascular plants, of which 14 are endemic, six are rare plants, 48 are floristic target species, and 14 are considered naturalized in Korea. Based on voucher specimens, Gasan Mt. was the southern limit of Cimicifuga heracleifolia var. bifida Nakai and Iris odaesanensis Y. N. Lee on the Korean peninsula. Moreover, we confirmed a hybrid plant deriving from two Iris parents, I. minutoaurea Makino and I. odaesanensis, in a mountain fortress of Gasan Mt. We also present online databases including 325 voucher specimens deposited at the Korea Institute of Oriental Medicine (KIOM; http://oasis.kiom.re.kr/herblib). This study has great significance as the first floristic study of Korean plants sharing virtual specimens online.

• Korean Journal of Ecology and Environment
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• v.54 no.2
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• pp.130-141
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• 2021

By reviewing previous literature, we analyzed the food sources of 20 out of 29 endangered fish species from freshwater ecosystems in South Korea. A total of 19 studies reported that food sources of 20 endangered fish species included 20 phyla, 31 classes, 58 orders, 116 families, and 154 genera. Arthropod, insecta, diptera, and chironomidae were the most fed animal food sources according to different resolution of taxa index on phylum, class, order and family. Similarity, bacillariophyta, bacillariophyceae, naviculales, and cymbellaceae were the most fed abundant plant sources. A larger number of fish species were reliant on animal food sources than plant food sources. 18 of the endangered fish preyed on arthropods, whereas only 6 species consumed bacillariophyta. To characterize the feeding groups of the 20 fish species, a hierarchical clustering analysis and non-metric multidimensional scaling analysis were conducted. The fish species were divided into two groups: 1) insectivores and 2) planktivores. A network analysis, which associated the link between endangered fishes and food sources, also revealed the same two groups. The highest hub score of food sources was for macroinvertebrates, including diptera (0.47), ephemeroptera (0.42), and trichoptera (0.38), based on the network analysis. Niche breadth was used to calculate the diversity of the food sources. Phoxinus phoxinus (0.57) showed thehighest food source diversity among the fish species, whereas Iksookimia pacifica (0.01) showed the lowest. This study will be utilized for the conservation and restoration of the endangered fish species.

• Korean Journal of Ecology and Environment
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• v.53 no.4
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• pp.311-323
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• 2020

We analyzed food sources of 45 fish species in 28 genera of 12 families based on literature data in freshwater ecosystems of South Korea. The food sources of 45 fish species included in a total of 26 phyla, 42 classes, 94 orders, 189 families and 294 genera. Among them, animal food sources were 16 phyla, 24 classes, 54 orders, 126 families and 212 genera, whereas plant food sources were relatively small with 10 phyla, 18 classes, 42 orders, 63 families and 82 genera. The animal food sources were classified into Arthropod, Insecta, Diptera and Chironomidae according to taxa. Meanwhile, Bacillariophyta, Bacillariophyceae, Cymbellales and Cymbellaceae were the most abundant among the plant sources. Self-Organized Map (SOM) and network analysis were conducted the food sources were classified into taxonomic groups and the feeding types of fish : 45 fish species were divided into five groups, characterizing 1) fishvores, 2) invertebratevores, planktivores including 3) zooplankton and 4) phytoplankton, and 5) omnivores. The network analysis presented link association between fishes and food sources. Macroinvertebrate including diptera and ephemeroptera were revealed as hub food sources based on network analysis. This literature study would expect that the application model with the food source of fish could be utilized for the evaluation of the food network or chain in freshwater ecosystems.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.55 no.5
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• pp.612-624
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• 2022

A novel Gram-positive, motile, non-spore forming aerobic marine bacterium, designated 107-1^T was isolated from tidal mud collected in Gyehwa-do, South Korea. Cells of strain 107-1^T were short rod or coccoid, oxidase negative, catalase positive and grew at 10-40℃ (with optimum growth at 25-30℃). It utilized menaquinones MK-7 and 8 as its respiratory quinones and its major fatty acids were anteiso-C_15:0 (37.9%), iso-C_16:0 (14.9%), and iso-C_14:0 (10.8%). Phylogenetic analysis based on 16S rRNA gene sequences revealed a distinct clade containing strain 107-1^T and close species Planococcus ruber CW1^T(98.52% sequence similarity), P. faecalis KCTC 33580^T(97.67%), P. kocurii ATCC 43650T(97.48%), P. donghaensis DSM 22276T(97.47%), and P. halocryophilus DSM 24743T(97.37%). Strain 107-1^T contains one circular chromosome (3,513,248bp in length) with G+C content of 44.6 mol%. Estimated ranges for genome to genome distance, average nucleotide identity, and average amino acid identity comparing strain 107-1^T with close taxa were 20.3-34.8%, 77.9-86.9%, and 73.6-92.8%, respectively. Based on polyphasic analysis, strain 107-1^T represents a novel species belonging to the genus Planococcus.

• Journal of Life Science
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• v.32 no.10
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• pp.803-811
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• 2022

Despite the importance of traditional Korean fermented foods, little is known about the microbial communities and diversity of fermented soy products. To gain insight into the unexplored microbial communities of both Doenjang (DJ) and Ganjang (GJ) that may contribute to the fermentation in Korean traditional foods, we carried out next-generation sequencing (NGS) based on the V3-V4 region of 16S rDNA gene analysis. The alpha diversity analysis results revealed that both the Shannon and Simpson diversity indices were significantly different between the two groups, whereas the richness indices, including ACE, CHAO, and Jackknife, were not significant. Firmicutes were the most dominant phylum in both groups, but several taxa were found to be more abundant in DJ than in GJ. The proportions of Bacillus, Kroppenstedtia, Clostridium, and Pseudomonas and most halophiles and halotolerant bacteria, such as Tetragenococcus, Chromohalobacter, Lentibacillus, and Psychrobacter, were lower in DJ than in GJ. Linear discriminant effect size (LEfSe) analysis was carried out to discover discriminative functional biomarkers. Biomarker discovery results showed that Bacillus and Tetragenococcus were identified as the most important features for the classification of subjects to DJ and GJ. Paired-permutational multivariate analysis of variance (PERMANOVA) further revealed that the bacterial community structure between the two groups was statistically different (p=0.001).

• Korean Journal of Plant Resources
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• v.34 no.2
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• pp.115-143
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• 2021

Mt. Hwang-ak, as a temple forest belongs to Baekdudaegan. flora investigation was conducted to better know of current natural environment. At the same time, For the understanding of planted plants which is in the traditional Korea buddhism temple for landscape, research on Jikji temple had taken place during 2019 April to October with 12 times. As a result, the list of plants at Mt. Hwang-ak was classified as a total of 534 taxa comprising of 96 families, 312 genus, 462 species, 4 subspecies, 59 varieties, 9 forma. This listed plants could be classified as 4 categories by each standard. the listed plants were 14 species of Korean endemic plants, 13 species of Rare plants data book in korea, 34 species of Invasive Alien Plants in South Korea with 10% of Urbanization Ratio and 6% of Naturalization Ratio respectively, 167 species of List of Medicinal Resources Plants in Korea. In the Temple of Jikji, could find 81 species of planted plants that widely distributed all around the temple for landscape. Compared to other temple, We could observed 51% of species were overlapping, Among them, 9% of species overlapping with more than three temples.