• Title/Summary/Keyword: Structure Similarity

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Magnetic Properties of Activated Quartz Nanocomposite

  • N.N., Mofa;T.A., Ketegenov;Z.A., Mansurov;Soh, Hyun-Jun;Soh, Dea-Wha
    • Journal of the Speleological Society of Korea
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    • no.78
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    • pp.9-15
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    • 2007
  • The materials showing high structure dispersion with functional properties were developed on the quartz base and those were obtained by mechano-chemical reaction technology. Depending on the processing conditions and subsequent applications the materials produced by mechano-chemical reaction show concurrently magnetic, dielectric and electrical properties. The obtained magnetic-electrical powders classified by aggregate complex of their features as segnetomagnetics, containing a dielectric material as a carrying nucleus, particularly the quartz on that surface one or more layers of different compounds were synthesized having thickness up to 1050nm showing magnetic, electrical properties and others. The similarity of the structure of surface layers of quartz particles subjected to mechano-chemical processing and nano-structure cluspol (clusters in a polymer matrics) material was alsoconfirmed by the fact that the characteristics of ferromagnetic quartz of insulating nano-composite powder were changed with time, after its preparing process was completed.

A Context-based Fast Encoding Quad Tree Plus Binary Tree (QTBT) Block Structure Partition

  • Marzuki, Ismail;Choi, Hansol;Sim, Donggyu
    • Proceedings of the Korean Society of Broadcast Engineers Conference
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    • 2018.06a
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    • pp.175-177
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    • 2018
  • This paper proposes an algorithm to speed up block structure partition of quad tree plus binary tree (QTBT) in Joint Exploration Test Model (JEM) encoder. The proposed fast encoding of QTBT block partition employs three spatially neighbor coded blocks, such as left, top-left, and top of current block, to early terminate QTBT block structure pruning. The propose algorithm is organized based on statistical similarity of those spatially neighboring blocks, such as block depths and coded block types, which are coded with overlapped block motion compensation (OBMC) and adaptive multi transform (AMT). The experimental results demonstrate about 30% encoding time reduction with 1.3% BD-rate loss on average compared to the anchor JEM-7.1 software under random access configuration.

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Solution Structure of Water-soluble Mutant of Crambin and Implication for Protein Solubility

  • Kang, Su-Jin;Lim, Jong-Soo;Lee, Bong-Jin;Ahn, Hee-Chul
    • Bulletin of the Korean Chemical Society
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    • v.32 no.5
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    • pp.1640-1644
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    • 2011
  • Water-soluble mutant of intrinsically insoluble protein, crambin, was produced by mutagenesis based on the sequence analysis with homologous proteins. Thr1, Phe13, and Lys33 of crambin were substituted for Lys, Tyr, and Lys, respectively. The resultant mutant was soluble in aqueous buffer as well as in dodecylphosphocholine (DPC) micelle solution. The $^1H-^{15}N$ spectrum of the mutant crambin showed spectral similarity to that of the wild-type protein except for local regions proximal to the sites of mutation. Solution structure of water-soluble mutant crambin was determined in aqueous buffer by NMR spectroscopy. The structure was almost identical to the wild-type structure determined in non-aqueous solvent. Subtle difference in structure was very local and related to the change of the intra- and inter-protein hydrophobic interaction of crambin. The structural details for the enhanced solubility of crambin in aqueous solvent by the mutation were provided and discussed.

Numerical Simulation of Slamming Phenomena for 2-D Wedges (2차원 쐐기형 구조물의 슬래밍 현상에 대한 수치 유동해석)

  • Yum, Deuk-Joon;Yoon, Bum-Sang
    • Journal of the Society of Naval Architects of Korea
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    • v.45 no.5
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    • pp.477-486
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    • 2008
  • Numerical analysis for slamming impact phenomena has been carried out when 2-dimensional wedge shaped structure with finite deadrise angles enter the free surface by using a commertial CFD code, FLUENT. Fluid is assumed incompressible and entry speed of the structure is kept constant. Geo-reconstruct scheme (or PLIC-VOF scheme) is used for the tracking of the deforming free surface. User defined function of 6 degrees of freedom motion and moving dynamic mesh option are used for the expression of the downward motion of the structure and deforming of unstructured meshes adjacent to the structure. The magnitude and the location of impact pressure and the total drag force which is the summation of pressures distributed at the bottom of the structure are analyzed. Results of the analysis show good agreement with the results of similarity solution, asymptotic solution and the solution of BEM.

Distribution patterns of macrobenthos in the sandy shore of Hakampo, Korea (학암포 사질조간대 대형저서동물의 분포양상)

  • Nam, Ki-Ung;Ma, Chae-Woo;Son, Dae-Sun;Kim, Jong-Chun
    • Korean Journal of Environment and Ecology
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    • v.29 no.5
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    • pp.729-735
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    • 2015
  • This study was carried out to analyze the community structure and distribution of macrobenthos in Hakampo sandy shore. As for the environmental factors of sampling stations, the average grain size of the sediments from the sampling stations was $2.37{\phi}$ with the range of $1.90{\phi}{\sim}2.52{\phi}$, which represents the typical medium sand sedimentary facies of sandy beach. The average sediment organic content was 1.15% with the range of 0.90%~1.46%. Most stations had low sediment organic content which is typical of sandy beach. The number of species were total 59 from 6 taxa and the individuals was $668inds./m^2$ in the 10 stations of the study area. Based on the Bray-Curtis similarity analysis, the 10 stations of the study area were broadly divided into 3 groups. The highest part of intertidal zone was St. 2~St. 4, the middle part of intertidal zone was St. 5~St. 8, and the lower part of intertidal zone was St. 9~St. 10. A spatial community structure was observed which is divided into the highest, middle, and lower parts.

Comparative molecular similarity indices analyses (CoMSIA) and hologram quantitative structure activity relationship (HQSAR) on the fungicial activity of 2-N-benzyl-5-phenoxy-3-isothiazolone derivatives against phytophthora blight fungus (고추역병균에 대한 2-N-benzyl-5-Phenoxy-3-isothiazolone 유도체의 살균활성에 관한 비교분자 유사성 지수분석(CoMSIA)과 홀로그램 구조-활성 관계(HQSAR))

  • Sung, Nack-Do;Kim, Ki-Hyun
    • The Korean Journal of Pesticide Science
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    • v.6 no.3
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    • pp.209-217
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    • 2002
  • Two different QSAR methods, the comparative molecular similarity indices analyses (CoMSIA) and hologram quantitative structure activity relationship (HQSAR) are studied for the fungicidal activities ($pI_{50}$) of 2-N-benzyl-5-phenoxy-3-isothiazolone derivatives against sensitive (SPC: 95CC7105) and resisitive (RPC: 95CC7303) phytophthora blight fungus (Phytaphthora capsici). According to the findings from these QSAR investigation, the cross-validation value, $q^2$ and Pearson correlation coefficient, $r^2$ in the two methods were CoMSIA: RPC; $q^2=0.675,\;r^2=0.942$, SPC; $q^2=0.350,\;r^2=0.876$ and HQSAR: RPC; $q^2=0.519,\;r^2=0.869$, SPC; $q^2=0.483,\;r^2=0.990$, respectively. Therefore, the two models of comparative statistical significance were obtained. From the CoMSIA contour maps, the important factors for selective fungicidal activity against RPC are to be expected that the lower hydrophobic and not bulkiness substituent as hydrogen bonding acceptor have to introduce to meta and para-position (C1-C6) on the phenoxy moiety. And the results of prediction suggest that HQSAR method showed higher fungicidal activity than CoMSIA method.

Exploring the Structure of Media Criticism: A Network Analysis of the Problems in Korean Newspaper Reporting (언론보도와 비평의 구조: 신문보도의 비평에 대한 네트워크 분석)

  • Jang, Ha-Yong
    • Korean journal of communication and information
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    • v.16
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    • pp.108-135
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    • 2001
  • This study examines the structure of the problems of Korean newspaper reporting raised by the civil society. Based on the differences in the mode of presentation, the problems of newspaper reporting were classified into three types; prominent, associated, and isolate problem. The relations among these problems were defined as the degree of co-occurrence in the monitoring articles. A network analysis was conducted to examine the structure of the problems in Korean newspaper reporting. A $33{\times}33$ similarity matrix of the problems was created by analyzing the data from one monitoring report and two weekly media critics newspapers. The results showed that of the 33 problems, most of them were mentioned as prominent or associated problems. The problems related to the news contents were mostly treated as prominent ones, while the problems about the news writing and reporting styles were frequently treated as associated ones. The network structure of newspaper criticism based on the co-occurrence of 33 problems were divided into six clusters. Among them, the most central was the group including the problems of "unfairness,' "biased interpretation," and "vagueness". In addition, the problems were found to have different roles in the network. Of the 33 problems, two were liaisons and four were attached isolates, indicating the hierarchical structure of problems in newspaper reporting. These results were discussed in the light of two viewpoints; the absence of objective criteria in media criticism, and the need for the comparisons of the current study's results with the opinions of newspaper readers and journalists. finally, the implications for the future studies were presented.

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Backbone 1H, 15N, and 13C Resonance Assignments and Secondary-Structure of Conserved Hypothetical Protein HP0894 from Helicobacter pylori

  • Han, Kyung-Doo;Park, Sung-Jean;Lee, Bong-Jin
    • Molecules and Cells
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    • v.20 no.3
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    • pp.442-445
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    • 2005
  • HP0894 (SwissProt/TrEMBL ID O25554) is an 88-residue conserved hypothetical protein from Helicobacter pylori strain 26695 with a calculated pI of 8.5 and a molecular weight of 10.38 kDa. Proteins with sequence similarity to HP0894 exist in Vibrio choierae, Enterococcus faecalis, Campylobacter jejuni, Streptococcus pneumoniae, Haemophilus influenzae, Escherichia coli O157, etc. Here we report the sequence-specific backbone resonance assignments of HP0894. About 97.5% (418/429) of the HN, N, CO, $C{\alpha}$, $C{\beta}$ resonances of the 88 residues of HP0894 were assigned. On the basis of these assignments, three helical regions and four strand regions were identified using the CSI program. This study is a prerequisite for calculating the solution structure of HP0894, and studying its interaction with its substrates, if any, and/or with other proteins.

Analysis of the Globular Nature of Proteins

  • Jung, Sung-Hoon;Son, Hyeon-Seok
    • Genomics & Informatics
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    • v.9 no.2
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    • pp.74-78
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    • 2011
  • Numerous restraints and simplifications have been developed for methods that anticipate protein structure to reduce the colossal magnitude of possible conformational states. In this study, we investigated if globularity is a general characteristic of proteins and whether they can be applied as a valid constraint in protein structure simulations with approximated measurements (Gb-index). Unexpectedly, most of the proteins showed strong structural globularity (i.e., mode of approximately 76% similarity to the perfect globe) with only a few percent of proteins being outliers. Small proteins tended to be significantly non-globular ($R^2$=0.79) and the minimum Gb-index showed a logarithmic increase with the increase in protein size ($R^2$=0.62), strongly implying that the non-globular characteristics might be more acceptable for smaller proteins than larger ones. The strong perfect globe-like character and the relationship between small size and the loss of globular structure of a protein may imply that living organisms have mechanisms to aid folding into the globular structure to reduce irreversible aggregation. This also implies the possible mechanisms of diseases caused by protein aggregation, including some forms of trinucleotide repeat expansion-mediated diseases.

Knowledge Structure of the Korean Journal of Occupational Health Nursing through Network Analysis (네트워크분석을 통한 직업건강간호학회지 논문의 지식구조 분석)

  • Kwon, Sun Young;Park, Eun Jung
    • Korean Journal of Occupational Health Nursing
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    • v.24 no.2
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    • pp.76-85
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    • 2015
  • Purpose: The purpose of this study was to identify knowledge structure of the Korean Journal of Occupational Health Nursing from 1991 to 2014. Methods: 400 articles between 1991 and 2014 were collected. 1,369 keywords as noun phrases were extracted from articles and standardized for analysis. Co-occurrence matrix was generated via a cosine similarity measure, then the network was analyzed and visualized using PFNet. Also NodeXL was applied to visualize intellectual interchanges among keywords. Results: According to the results of the content analysis and the cluster analysis of author keywords from the Korean Journal of Occupational Health Nursing articles, 7 most important research topics of the journal were 'Workers & Work-related Health Problem', 'Recognition & Preventive Health Behaviors', 'Health Promotion & Quality of Life', 'Occupational Health Nursing & Management', 'Clinical Nursing Environment', 'Caregivers and Social Support', and 'Job Satisfaction, Stress & Performance'. Newly emerging topics for 4-year period units were observed as research trends. Conclusion: Through this study, the knowledge structure of the Korean Journal of Occupational Health Nursing was identified. The network analysis of this study will be useful for identifying the knowledge structure as well as finding general view and current research trends. Furthermore, The results of this study could be utilized to seek the research direction in the Korean Journal of Occupational Health Nursing.