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Xenie: Integration of Human 'gene to function'information in human readable & machine usable way

  • Ahn, Tae-Jin
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2000.11a
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    • pp.53-55
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    • 2000
  • Xenie is the JAVA application software that integrates and represents 'gene to function'information of human gene. Xenie extracts data from several heterogeneous molecular biology databases and provides integrated information in human readable and machine usable way. We defined 7 semantic frame classes (Gene, Transcript, Polypeptide, Protein_complex, Isotype, Functional_object, and Cell) as a common schema for storing and integrating gene to function information and relationship. Each of 7 semantic frame classes has data fields that are supposed to store biological data like gene symbol, disease information, cofactors, and inhibitors, etc. By using these semantic classes, Xenie can show how many transcripts and polypeptide has been known and what the function of gene products is in General. In detail, Xenie provides functional information of given human gene in the fields of semantic objects that are storing integrated data from several databases (Brenda, GDB, Genecards, HGMD, HUGO, LocusLink, OMIM, PIR, and SWISS-PROT). Although Xenie provide fully readable form of XML document for human researchers, the main goal of Xenie system is providing integrated data for other bioinformatic application softwares. Technically, Xenie provides two kinds of output format. One is JAVA persistent object, the other is XML document, both of them have been known as the most favorite solution for data exchange. Additionally, UML designs of Xenie and DTD for 7 semantic frame classes are available for easy data binding to other bioinformatic application systems. Hopefully, Xenie's output can provide more detailed and integrated information in several bioinformatic systems like Gene chip, 2D gel, biopathway related systems. Furthermore, through data integration, Xenie can also make a way for other bioiformatic systems to ask 'function based query'that was originally impossible to be answered because of separatly stored data in heterogeneous databases.

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Construction of e-Emergency Service System Infrastructure in Busan Metropolitan City (부산광역시 e-응급서비스시스템 인프라 구축)

  • Kim, Hyung-Hoi;Cho, Hune;Kim, Hwa-Sun;Cho, Suck-Ju
    • Journal of Korea Multimedia Society
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    • v.11 no.9
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    • pp.1267-1276
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    • 2008
  • The time taken for an ischemic heart disease patient to have a percutaneous coronary intervention because of acute myocardial infarction after arriving at the hospitals (door-to-balloon time) affects the patient's mortality significantly. To improve the emergency service system that has been previously used in the hospitals, this study focused on reducing door-data time and data-to-decision time among three time stages. The newly established e-emergency service system has set up the database of patients that had an emergency operation for acute myocardial infarction in the emergency service system of the hospital and has issued health cards for the patients that regularly visit the Busan National University Hospital. In addition, it has stored prior operation permits in the form of a certified electronic document. The new electronic system will reduce the complex treatment and operation procedures innovatively. Therefore, it is expected that this will make the life save (or the emergency patients easier and reduce the mortality. Moreover, it will also settle down the hospital staff's and patients' predicaments caused by the complex procedure of the legacy system.

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A Study of Clothing Design in the Digital Age (디지털 시대의 의상 디자인 개발에 관한 연구)

  • 배리사;이인성
    • Journal of the Korean Society of Costume
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    • v.54 no.4
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    • pp.63-74
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    • 2004
  • This study shows that clothes to be just the same as the real thing can be Produced through the third dimension computer graphics, and then presents that not only the area of fashion design can be expanded in the virtual reality field by doing the simulation of the fashion show, but also the information can be made the real time public ownership and the communication can be fulfilled smoothly. In this study, analyzing the third dimension computer graphic programs to be used much at present, Alias Wavefront Company's Maya software which was the most effective in the clothes simulation and the clothes CAD SGS OptiTex 8.7 which went well substitutive for it were used of them. The conclusions of this study that got through the work manufacture are as follows: The first, if the file manufacturing in the clothes CAD by using the computer was stored, the pattern used 3D simulation was available because it could be summoned in 3D software. The second, if the data of DXF form in Maya program was summoned, they could not be applied by Maya Cloth supported in Nurbs only because they were recognized as the DXF_layer. So the curve along the outer lines of the pattern was drawn and Maya Cloth was applied to be possible to get the natural silhouette of clothes. The third, when the clothes were manufactured by 3D, if the draping character was applied according to the textile special quality, not only the control of textile's thickness, weight, quality feeling, and silhouette was available, but also the clothes were available to graft the special textile materials. The fourth, the natural motion of model was produced by capturing the actual model's walking action In order to produce the fashion show motion and also the dynamic fashion show was available by the angle of camera, the establishment of lighting, and etc. in the final rendering. The clothes manufactured by 3D are available to change the design by changing the materials, or by adding the details, or by utilizing the special materials on clothes. Therefore, the trial and error following at the clothes manufacture can be reduced. But the elevation of the rendering speed, the price down, the strengthening of personal security, and etc. are required.

A Tile-Image Merging Algorithm of Tiled-Display Recorder using Time-stamp (타임 스탬프를 이용한 타일드 디스플레이 기록기의 타일 영상 병합 알고리즘)

  • Choe, Gi-Seok;Nang, Jong-Ho
    • Journal of KIISE:Computer Systems and Theory
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    • v.36 no.5
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    • pp.327-334
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    • 2009
  • The tiled-display system provides a high resolution display which can be used in different applications in co-working area. The systems used in the co-working field usually save the user logs, and these log information not only makes the maintenance of the tiled-display system easier, but also can be used to check the progress of the co-working. There are three main steps in the proposed tiled display log recorder. The first step is to capture the screen shots of the tiles and send them for merging. The second step is to merge the captured tile images to form a single screen shot of the tiled-display. The final step is to encode the merged tile images to make a compressed video stream. This video stream could be stored for the logs of co-working or be streamed to remote users. Since there could be differences in capturing time of tile images, the quality of merged tiled-display could be degraded. This paper proposes a time stamp-based metric to evaluate the quality of the video stream, and a merging algorithm that could upgrade the quality of the video stream with respect to the proposed quality metrics.

The Development of Mobile Positioning System Using CCD Cameras and GPS (CCD 사진기와 GPS를 이용한 이동용 위치결정체계 개발)

  • 유복모;최송욱;김기홍
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.16 no.1
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    • pp.41-50
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    • 1998
  • The object positional data in the form of digital imagery is processed and stored and is updated easily. The GPS, positioning system using satellites, is acquired its utilities in many parts because it is very easy to get the three dimensional coordinates using GPS around the world. For the effective acquisition of positional data to-ward objects in space, the automation of digital photogrammetry must be done and data acquisition and processing should be performed in real-time. In this study, the program is developed for automatic process of digital photogrammetry and the VAN that has CCD cameras and GPS receivers onboard is built for mobile positioning system. Also, the three dimensional positioning toward 20 objects which are vertical to the ground is done using left and right imagery of CCD cameras and GPS. For a base research in real-time photogrammetry, the three dimensional positioning is performed using continuous imagery and GPS and the three dimensional positioning accuracy is analyzed.

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A Study on the Present Book Numbers Used in Korean Libraries (우리나라 도서관에서 사용하고 있는 도서기호법에 관한 실태조사연구)

  • Lee Yang-Sook
    • Journal of the Korean Society for Library and Information Science
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    • v.28
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    • pp.23-70
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    • 1995
  • This study is to survey the present book numbers used in Korean libraries. to analyze their problems. and to suggest improvement in the book numbers. As the results of the survey several suggestions are derived as follows. 1. The education to the librarians about the kinds and the application methods of the book numbers used in Korean libraries should be sufficiently offered. 2. The present book numbers used should be expanded in detail for avoiding the duplication of the call numbers. Also when book numbers are assigned. shelf list cards should be examined one by one not to give the same number. If the book numbers are overlapped in the state not to expand further. libraries should establish a detailed expansion rules according to their respective situation and maintain it consistently. However, it is impossible for libraries operating open stack systems to arrange books on the shelves in call number sequence, therefore libraries can solve the problems as they accept duplication cases. 3. Since the object word of main mark IS a heading In main entry, we must apply cataloging rules to it closely. 4. For expanding book numbers widely it is desirable that the subsidiary mark of the book numbers which is the most prevalent in general and will be the most preferable In the future through the survey should be added and be provided. 5. The book numbers used being changed, we are to assign new book number leaving former materials as they are at the point of adopting a new book number. So aged materials are stored in a repository or on a compact shelf in the stack, will be discarded or weeded according to subjects after a certain period of time. 6. With library automation bringing together all the books of an author in a particular subject or in a particular form and avoiding completely duplication in open stack systems are meaningless. Rather than chronological book numbers, distinguishing clearly new materials from aged materials and controlling the stack spaces mechanically and effectively, can be regarded as the most modern and future-oriented of all the book numbers.

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UML Diagrams Repository System for Requirement Analysis (요구분석을 위한 UML 다이어그램 저장관리 시스템)

  • 이성대;박휴찬
    • Journal of KIISE:Computing Practices and Letters
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    • v.8 no.6
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    • pp.657-668
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    • 2002
  • Software life cycle consists of requirement analysis, design, implementation, and maintenance phases, and the product of each phase has various format. The UML normalizes such products, and the class diagram, use case diagram, activity diagram and collaboration diagram are usually used for the requirement analysis phase. Because most of UML development tools store such diagrams in a file, there nay be some difficulties of information retrieval and co-work among users. To cope with the difficulties, this paper proposes a database supported methodology to store and manage the diagrams produced by the requirement analysis. In this methodology, the constituents of class, use case, activity and collaboration diagram are first analyzed and then transformed in the form of relational fables. The constituents of such diagrams are stored as tables in a database, and can be easily retrieved from the database by using some queries. This database supported methodology provides the concurrent sharing and high reuse of diagrams.

A Study of Data Structure for Efficient Storing of 3D Point Cloud Data (3차원 점군자료의 효율적 저장을 위한 자료구조 연구)

  • Jang, Young-Woon;Cho, Gi-Sung
    • Journal of Korean Society for Geospatial Information Science
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    • v.18 no.2
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    • pp.113-118
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    • 2010
  • Recently, 3D-reconstruction for geographic information and study of geospatial information is progressing in various fields through national policy such as R&D business and pilot project. LiDAR system has a advantage of acquisition the 3D information data easily and densely so that is used in many different fields. Considering to characterist of the point data formed with 3D, it need a high specification CPU because it requires a number of processing operation for 2D form expressed by monitor. In contrast, 2D grid structure, like DEM, has a advantage on costs because of simple structure and processing speed. Therefore, purpose of this study is to solve the problem of requirement of more storage space, when LiDAR data stored in forms of 3D is used for 3D-geographic and 3D-buliding representation. Additionally, This study reconstitutes 2D-gird data to supply the representation data of 3D-geographic and presents the storage method which is available for detailed representation applying tree-structure and reduces the storage space.

An Optimized User Behavior Prediction Model Using Genetic Algorithm On Mobile Web Structure

  • Hussan, M.I. Thariq;Kalaavathi, B.
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.9 no.5
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    • pp.1963-1978
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    • 2015
  • With the advancement of mobile web environments, identification and analysis of the user behavior play a significant role and remains a challenging task to implement with variations observed in the model. This paper presents an efficient method for mining optimized user behavior prediction model using genetic algorithm on mobile web structure. The framework of optimized user behavior prediction model integrates the temporary and permanent register information and is stored immediately in the form of integrated logs which have higher precision and minimize the time for determining user behavior. Then by applying the temporal characteristics, suitable time interval table is obtained by segmenting the logs. The suitable time interval table that split the huge data logs is obtained using genetic algorithm. Existing cluster based temporal mobile sequential arrangement provide efficiency without bringing down the accuracy but compromise precision during the prediction of user behavior. To efficiently discover the mobile users' behavior, prediction model is associated with region and requested services, a method called optimized user behavior Prediction Model using Genetic Algorithm (PM-GA) on mobile web structure is introduced. This paper also provides a technique called MAA during the increase in the number of models related to the region and requested services are observed. Based on our analysis, we content that PM-GA provides improved performance in terms of precision, number of mobile models generated, execution time and increasing the prediction accuracy. Experiments are conducted with different parameter on real dataset in mobile web environment. Analytical and empirical result offers an efficient and effective mining and prediction of user behavior prediction model on mobile web structure.

The effect of a desensitizer and $CO_2$ laser irradiation on bond performance between eroded dentin and resin composite

  • Ding, Meng;Shin, Sang-Wan;Kim, Min-Soo;Ryu, Jae-Jun;Lee, Jeong-Yol
    • The Journal of Advanced Prosthodontics
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    • v.6 no.3
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    • pp.165-170
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    • 2014
  • PURPOSE. This study was aimed to evaluate effect of the desensitizing pretreatments on the micro-tensile bond strengths (${\mu}TBS$) to eroded dentin and sound dentin. MATERIALS AND METHODS. Forty-two extracted molars were prepared to form a flat dentin surface, and then they were divided into two groups. Group I was stored in distilled water while group II was subjected to a pH cycling. Each group was then subdivided into three subgroups according to desensitizing pretreatment used: a) pretreatment with desensitizer (Gluma); b) pretreatment with $CO_2$ Laser (Ultra Dream Pluse); c) without any pretreatment. All prepared surfaces were bonded with Single Bond 2 and built up with resin composite (Filtek Z250). The micro-tensile bond test was performed. Fracture modes were evaluated by stereomicroscopy. Pretreated surfaces and bonded interfaces were characterized by scanning electron microscope (SEM). The data obtained was analyzed by two-way ANOVA (${\alpha}$=0.05). RESULTS. For both sound and eroded dentin, samples treated with desensitizer showed the greatest ${\mu}TBS$, followed by samples without any treatment. And samples treated with $CO_2$ laser showed the lowest ${\mu}TBS$. SEM study indicated that teeth with eroded dentin appeared prone to debonding, as demonstrated by existence of large gaps between adhesive layers and dentin. CONCLUSION. Pretreatment with Gluma increased the ${\mu}TBS$ of Single Bond 2 for eroded and sound teeth. $CO_2$ laser irradiation weakened bond performance for sound teeth but had no effect on eroded teeth.