• Proceedings of the Korean Society of Crop Science Conference
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• 2019.04a
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• pp.129-129
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• 2019

• The Plant Pathology Journal
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• v.17 no.6
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• pp.368.2-368
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• 2001

• Journal of Plant Biotechnology
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• v.45 no.3
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• pp.207-216
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• 2018

Solanum berthaultii is one of the wild diploid Solanum species, which is an excellent resource in potato breeding owing to its resistance to several important pathogens. On the other hand, sexual hybridization between S. berthaultii and S. tuberosum (potato) is limited because of their sexual incompatibility. Therefore, cell fusion can be used to introgress various novel traits from this wild species into the cultivated potatoes. After cell fusion, it is crucial to identify fusion products with the aid of molecular markers. In this study, the chloroplast genome sequence of S. berthaultii obtained by next-generation sequencing technology was described and compared with those of five other Solanum species to develop S. berthaultii specific markers. A total sequence length of the chloroplast genome is 155,533 bp. The structural organization of the chloroplast genome is similar to those of the five other Solanum species. Phylogenic analysis with 25 other Solanaceae species revealed that S. berthaultii is most closely located with S. tuberosum. Additional comparison of the chloroplast genome sequence with those of the five Solanum species revealed 25 SNPs specific to S. berthaultii. Based on these SNPs, six PCR-based markers for differentiating S. berthaultii from other Solanum species were developed. These markers will facilitate the selection of fusion products and accelerate potato breeding using S. berthaultii.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.11 no.4
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• pp.37-45
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• 2008

The vascular plants of the studied area in Nonsan economical forest growing site appeared to be 341 taxa; 81 families, 218 genera, 290 species, 1 subspecies, 42 varieties and 9 forms. Based on the list of Korean endemic plants, 5 taxa existed; Cephalotaxus koreana, Thalictrum actaefolium, Asperula lasiantha, Populus tomentiglandulosa (Planted species), Paulownia coreana (Planted species). Specific plant species by floral region were total 13 taxa; Cirsium setidens in class III, Potentilla dickinsii in class II, Cephalotaxus koreana, Pinus koraiensis (Planted species), Hosta capitata, Juglans mandshurica, Alnus hirsuta, Quercus variabilis, Ulmus parvifolia, Dictamnus dasycarpus, Gwenia biloba var. parviflora, Vaccinium oldhami, Trigonotis icumae in class I. The naturalized plants in this site were 9 families, 19 genera, 20 species, 1 varieties, 21 taxa and naturalization rate was 6.1% of all 341 taxa vascular plants. The communities were classified into Quercus acutissima community, Pinus densiflora community, Quercus variabilis community, Platycarya strobilacea community, Quercus aliena community of natural forests and Pinus rigida community, Metasequoia glyptostroboides community, Larix leptolepis community of artificial forests.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.9 no.3
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• pp.59-75
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• 2006

The vascular plants of this site was listed 360 taxa; 86 families, 229 genera, 311 species, 42 varieties and 7 forms. Specific plant species by floral region were total 40 taxa; 2 taxa(Crypsinus hastatus, Prunus yedoensis) in class V, Patrinia rupestris in class IV, 6 taxa(Elymus mollis, Carex laticeps, Poncirus trifoliata, Melia azedarach var. japonica, Koelreuteria paniculata, Crepiastrum lanceolatum) in class III, Cirsium schantarense in class II, 30 taxa(Lygodium japonicum, Pteris multifida, Phacelurus latifolius, Asparagus cochinchinensis, Ficus erecta, Machilus thunbergii, Zanthoxylum planispinum, Euphorbia esula, Mallotus japonicus, Cayratia japonica, Camellia japonica, Glehnia littoralis, Lysimachia fortunei, Messerschmidia sibirica, Ixeris repens etc.) in class I. The naturalized plants in this site were 14 families, 34 genera, 41 species, 1 varieties, 42 taxa and naturalization rate was 20.3% of all 207 taxa vascular plants. Based on the list of the rare plants by the Forest Research Institute, 2 taxa were recorded in the studied areas; Phacelurus latifolius, Crypsinus hastatus and based on the list of Korean endemic plants, 7 taxa were recorded; Populus tomentiglandulosa, Filipendula glaberrima, Prunus yedoensis, Forsythia koreana, Paulownia coreana, Weigela subsessilis, Carpinus coreana. So, wild plants disturbing ecosystem like Solanum carolinense and Ambrosia artemisiifolia var. elatior have been increasing, it needs continuing control and conservation measures on the plant ecosystem.

• Journal of Plant Biotechnology
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• v.49 no.1
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• pp.39-45
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• 2022

Conserved domains are defined as recurring units in molecular evolution and are commonly used to interpret the molecular function and biochemical structure of proteins. Herein, the ADP-glucose pyrophosphorylase (AGPase) amino acid sequences of three species of the Ipomoea genus [Ipomoea trifida, I. triloba, and I. batatas (L.) Lam. (sweetpotato)] were identified to investigate their physicochemical and biochemical characteristics. The molecular weight, isoelectric point, instability index, and grand average of hyropathy markedly differed among the three species. The aliphatic index values of sweetpotato AGPase proteins were higher in the small subunit than in the large subunit. The AGPase proteins from sweetpotato were found to contain an LbH_G1P_AT_C domain in the C-terminal region and various domains (NTP_transferase, ADP_Glucose_PP, or Glyco_tranf_GTA) in the N-terminal region. Conversely, most of its two relatives (I. trifida and I. triloba) were found to only contain the NTP_transferase domain in the N-terminal region. These findings suggested that these conserved domains were species-specific and related to the subunit types of AGPase proteins. The study may enable research on the AGPase-related specific characteristics of sweetpotatoes that do not exist in the other two species, such as starch metabolism and tuberization mechanism.

• Journal of Plant Biotechnology
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• v.7 no.2
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• pp.105-112
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• 2005

Buffer soluble protein and five isozymes were analyzed to assess the inter specific relationship among 25 species of the genus Mammillaria Haw. A total of 102 types of proteins were resolved, out of which eighty-six types were found to be polymorphic and only two were unique. A total of 248 bands (isoforms) were detected for 5 isozymes, among them only 4 were found to be monomorphic and 35 were exclusive. Mantel 'Z' statistics revealed wide variations in the correlation among different enzymes. The correlation value 'r' was the highest in case of esterase with pooled data of all the five enzymes. The dendrogram constructed on the basis of pooled data (protein and allozyme) divided the species into two major clusters containing 14 and 11 members respectively. The species M. matudae and M. bella were found to be the most closely related while M. decipience and M. camptroticha were distantly apart. The present study gave an indication of usefulness of the isozyme and protein markers for genetic discrimination between different species of Mammillaria.

• The Plant Pathology Journal
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• v.35 no.6
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• pp.654-661
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• 2019

The soybean cyst nematode, Heterodera glycines, is a major plant-parasitic nematode that has caused important economic losses to Korea's soybean production. Four species of cyst nematodes, H. schachtii, H. glycines, H. trifolii, and H. sojae, all belong to schachtii group are coexist in field soil in Korea. The rapid identification of the nematode is crucial for preventing crop damage and in decision making for controlling this nematode. This study aimed to develop a species-specific primer set for quantitative PCR (qPCR) assay of H. glycines. The specific primer set (HGF1 and HGR1) for H. glycines was designed based on the cytochrome c oxidase subunit I (COI) sequence of mitochondrial DNA. After optimization, it is possible to identify the H. glycines using a qPCR assay with DNA extracted from a single cyst and single second-stage juvenile (J2). The specificity was confirmed by the absence of SYBR fluorescent signals of three other Heterodera species. A serial dilution of DNA extracted from a single cyst was obtained for the sensitivity test. The result showed that the standard curve of the test had a highly significant linearity between DNA concentration and Ct value (R² = 0.996, slope = -3.49) and that the detection limit concentration of DNA of the primer set was 10 pg of DNA per reaction. Our findings suggested that H. glycines could be distinguished from H. sojae and other Heterodera species when a qPCR assay is used with a specific primer set.

• Proceedings of the Botanical Society of Korea Conference
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• 1998.07a
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• pp.10-18
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• 1998

For improvement of plants in disease resistance, it is most important to elucidate the mechanism to perceive and respond to the signal molecules of invaders. A model system with pea and its pathogen, Mycosphaerella pinodes, showed that the fungal elicitor induced defense responses in all plant species tested but that the suppressor of the fungus blocked or delayed the expression of defense responses and induced accessibility only in the host plant. In the world, many researchers believe that the pathogens` signals are recognized only on the receptors in the plasma membranes. Though we found that the ATPase and polyphosphoinositide metabolism in isolated plasma membranes responded to these fungal signals, we failed to detect specific actions of the suppressor in vitro on these plasma membrane functions. Recently, we found that ATPase (NTPases) and superoxide generating system in isolated cell wall were regulated by these fungal signals even in vitro, especially, by the suppressor in a strictly species-specific manner and also that the cell wall alone prepared an original defense system. The effects of both fungal signals on the isolated cell wall functions in vitro coincide perfectly with those on defense responses in vivo. In this treatise, we discuss the key role of the cell wall, which is plant-specific and the most exterior organelle, in determining host-parasite specificity and molecular target for improvement of plants.

• Proceedings of the Korean Society of Plant Pathology Conference
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• 2003.10a
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• pp.30-31
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• 2003

Total 291 isolates of Ampelomyces quisqualis were obtained from 32 species of powdery mildew fungi and a selected isolate, Ampelomyces quisqualis 94013 (AQ94013) effectively hyperparasitized 6 species of Sphaerotheca and one species of Erysiphe which cause serious damage on many important crops in Korea. Moreover, AQ94013 showed antagonistic effects against 12 major fungal plant pathogens as well. Results indicated that the present isolate is not a host specific hyperparasite and has a broad spectrum of biocontrol potential. Providentially, AQ94013 revealed resistance to a number of agrochemicals so as to be applied with the chemicals reciprocally.(중략)