• Title/Summary/Keyword: Species detection

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Exploring small mammal monitoring in South Korea: The debut of the Mostela

  • Hee-Bok Park;Anya Lim
    • Journal of Ecology and Environment
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    • v.47 no.4
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    • pp.211-218
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    • 2023
  • Background: Traditional wildlife monitoring has often relied on invasive techniques posing risks to species and demanding substantial resources. To address this, camera traps emerged as non-invasive alternatives, albeit primarily tailored for larger mammals, posing limitations for small mammal research. Thus, the Mostela, an innovative tool designed to overcome these challenges, was introduced to monitor small mammals in South Korea. Results: The Mostela was deployed at two study sites in South Korea, yielding compelling evidence of its efficiency in capturing small mammal species. By analyzing the collected data, we calculated the relative abundance of each species and elucidated their activity patterns. Conclusions: In summary, the Mostela system demonstrates substantial potential for advancing small mammal monitoring, offering valuable insights into diversity, community dynamics, activity patterns, and habitat preferences. Its application extends to the detection of endangered and rare species, further contributing to wildlife conservation efforts in South Korea. Consequently, the Mostela system stands as a valuable addition to the toolkit of conservationists and researchers, fostering ethical and non-invasive research practices while advancing our understanding of small mammal populations and ecosystems.

Development of the Droplet Digital PCR Method for the Detection and Quantification of Erwinia pyrifoliae

  • Lin, He;Seong Hwan, Kim;Jun Myoung, Yu
    • The Plant Pathology Journal
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    • v.39 no.1
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    • pp.141-148
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    • 2023
  • Black shoot blight disease caused by Erwinia pyrifoliae has serious impacts on quality and yield in pear production in Korea; therefore, rapid and accurate methods for its detection are needed. However, traditional detection methods require a great deal of time and fail to achieve absolute quantification. In the present study, we developed a droplet digital polymerase chain reaction (ddPCR) method for the detection and absolute quantification of E. pyrifoliae using a pair of species-specific primers. The detection range was 103-107 copies/ml (DNA templates) and cfu/ml (cell culture templates). This new method exhibited good linearity and repeatability and was validated by absolute quantification of E. pyrifoliae DNA copies from samples of artificially inoculated immature pear fruits. Here, we present the first study of ddPCR assay for the detection and quantification of E. pyrifoliae. This method has potential applications in epidemiology and for the early prediction of black shoot blight outbreaks.

Rapid Detection Method for Fusaric Acid-producing Species of Fusarium by PCR (후자린산(Fusaric acid) 생성 Fusarium 종의 신속 검출 PCR)

  • Lee, Theresa;Kim, Sosoo;Busman, Mark;Proctor, Robert H.;Ham, Hyeonhui;Lee, Soohyung;Hong, Sung Kee;Ryu, Jae-Gee
    • Research in Plant Disease
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    • v.21 no.4
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    • pp.326-329
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    • 2015
  • Fusaric acid is a mycotoxin produced by species of the fungus Fusarium and can act synergistically with other Fusarium toxins. In order to develop a specific detection method for fusaric acid-producing fungus, PCR primers were designed to amplify FUB10, a transcription factor gene in fusaric acid biosynthetic gene cluster. When PCR with Fub10-f and Fub10-r was performed, a single band (~550 bp) was amplified from F. oxysporum, F. proliferatum, F. verticillioides, F. anthophilum, F. bulbicola, F. circinatum, F. fujikuroi, F. redolens, F. sacchari, F. subglutinans, and F. thapsinum, all of which were known for fusaric acid production. Whereas the FUB10 specific band was not amplified from Fusarium species known to be trichothecene producer. Because production of fusaric acid can co-occur in species that also produce fumonisin mycotoxins, we developed a multiplex PCR assay using the FUB10 primers as well as primers for the fumonisin biosynthetic gene FUM1. The assay yielded amplicons from fumonisin producers such as F. proliferatum and F. verticillioides, allowing for the simultaneous detection of species with the genetic potential to produce both types of mycotoxins.

The Study on the Establishment of Specific ELISA for the Detection of Fish Metallothionein (어류 Metallothionein에 대한 특이적 면역 효소 측정법의 확립에 관한 연구)

  • 황갑수
    • Environmental Analysis Health and Toxicology
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    • v.11 no.1_2
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    • pp.11-17
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    • 1996
  • The purpose of this experiment is to estabilish the sensitive and specific ELISA (enzyme linked immunosorbent assay) system for the detection of fish metallothionein (MT). Silver carp were injected with CA of 1-8mg/kg body wt. 4 times during 10 days. Silver carp was very tolerant species to CA. Cd induced MT in liver was seperated and purified by gel filtration chromatography and ion exchange chromatography and identified by spectrophotometry, native gel electrophoresis and western blot analysis. The rabbit antiserum was produced by immunizing rabbit with lyophilized MT, and the competitive ELISA system was estabilished for the detection of fish MT. In the present ELISA system, the detection limit was about 33 ng/ml. When this ELISA system was employed to determine the MT level in the supernatant sample of fish liver homogenate, the reaction curve showed a good parallel corelationship with the calibration curve over a certain dilution range. The results indicate that the competitive ELISA can be a useful tool for the detection of fish MT in the toxicological study and the evaluation of water pollution.

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Development of a Multiplex Reverse Transcription-Polymerase Chain Reaction Assay for the Simultaneous Detection of Three Viruses in Leguminous Plants

  • Park, Chung Youl;Min, Hyun-Geun;Lee, Hong-Kyu;Maharjan, Rameswor;Yoon, Youngnam;Lee, Su-Heon
    • Research in Plant Disease
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    • v.24 no.4
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    • pp.348-352
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    • 2018
  • A multiplex reverse transcription-polymerase chain reaction (mRT-PCR) assay was developed for the detection of Clover yellow vein virus (ClYVV), Peanut mottle virus (PeMoV), and Tomato spotted wilt virus (TSWV), which were recently reported to infect soybean and azuki bean in Korea. Species-specific primer sets were designed for the detection of each virus, and their specificity and sensitivity were tested using mixed primer sets. From among the designed primer sets, two combinations were selected and further evaluated to estimate the detection limits of uniplex, duplex, and multiplex RT-PCR. The multiplex RT-PCR assay could be a useful tool for the field survey of plant viruses and the rapid detection of ClYVV, PeMoV, and TSWV in leguminous plants.

A study of dental calculus scanning electron microscopic by observation bacteria identification (치석의 주사전자현미경 관찰 및 세균동정에 관한 연구)

  • Jang, Gye-Won
    • Journal of Korean society of Dental Hygiene
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    • v.7 no.2
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    • pp.189-196
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    • 2007
  • A study of the J health college dept of dental hygiene practice vistant a total of 35 supragingival calculus and subgingival calculus picking SEM observation and bacteria identification of the result are followings. 1. As observed by dental calculus SEM, the surface roughness appeared as peaks, valleys, and pits. 2. About bacteteria morphology blood agar plate small green zone partial hemolysis colony streptococcus observation 3. Isolated colony gram stain gram are positive display 4. Supragingival calculus at Lactococcus lactis spp. Leuconostoc spp. Streptococcus mitis, Aerococcus viridans bacteria 1, 3, 3, 16 species detection 5. Subgingival calculus at Aerococcus viridans, Leuconostoc spp. bacteria 5, 1 species detection.

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Application of methylene blue color test for the detection of inherited susceptibility to hemolysis of Korean native cattle (한우(韓牛)의 선천성용혈감수성검사(先天性溶血感受性檢査)에 대한 methylene blue 청색소실시험법(靑色消失試驗法)의 적용(適用))

  • Cho, Jong-hoo
    • Korean Journal of Veterinary Research
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    • v.28 no.2
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    • pp.327-329
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    • 1988
  • Blood samples were obtained from Korean native cattle and dairy cattle of Holstein species in the slaughter house and methylene blue color tests were performed for the detection of the inherited susceptibitity to hemolysis. Glucose-6-phosphate dehydrogenase activities expressed as the optical density obtained by methylene blue color test were the highest as 0.54 in male Korean cattle, 0.62 in female Korean cattle and 0.72 in dairy cattle of Holstein species. Percent hemolysis, packed cell volume and plasma protein contents were measured and compaired with relation to the results of methylene blue color test and no correlation were observed in each.

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Detection of Mycoplasma gallisepticum using Polymerase Chain Reaction(PCR) (PCR 기법을 이용한 Mycoplasma gallisepticum의 검출)

  • Lee, Young-ju;Kim, Ki-seuk;Kim, Jong-wan;Tak, Ryun-bin
    • Korean Journal of Veterinary Research
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    • v.39 no.1
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    • pp.90-95
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    • 1999
  • A species-specific 760 base pair(bp) BamHI to EcoRI DNA fragment(fMG-2) of lipoprotein gene was isolated from a Mycoplasma gallisepticum(M gallisepticum) genomic library. Based on the DNA sequence data of fMG-2, a pair of 25bp primers was synthesized. When used in the polymerase chain reaction(PCR), 732bp DNA products were amplified from 6 standard strains and 10 field isolates of M gallisepticum, but not from 2 Mycoplasma synoviae and 7 other Mycoplasma species. The lower detection limit was 100fg of the genomic DNA. Identity of the PCR products was confirmed by comparison of patterns of restriction endonuclease analysis with AseI, DraI, EcoRV and SspI.

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Serosurvey for antibodies against brucellosis in pigs (돼지 brucellosis에 대한 항체가 조사)

  • Hur, Jin;Baek, Byeong-Kirl
    • Korean Journal of Veterinary Service
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    • v.34 no.2
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    • pp.153-157
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    • 2011
  • In order to investigate serum antibodies for detection of brucellosis in pigs, a total of 1208 sera were tested by Rose Bengal test (RBT), the standard tube agglutination test (STAT) and competitive ELISA (cELISA). The sera were collected from pigs of Gyeonggi, Chungnam, Chungbuk, Jeonnam and Jeonbuk, provinces during the period 2002 to 2004. All the sera were screened by RBT, and were confirmed by STAT and cELISA. Among 1208 sera, 26 sera (2.2%) were positive in screening test. All the 26 positive sera were positive by STAT, while all the sera were negative by cELISA. On the basis of this study, farmed pigs may be exposed to Brucella species. Furthermore, these results suggest that establishment of diagnoses for detection of porcine brucellosis is necessary.

Multiplex Polymerase Chain Reaction Assay for Simultaneous Detection of Candida albicans and Candida dublinensis

  • Lim, Young-Hee;Lee, Do-Hyun
    • Journal of Microbiology
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    • v.40 no.2
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    • pp.146-150
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    • 2002
  • A multiplex polymerase chain reaction (PCR) assay was developed for the identification of two Candida species-albicans and dubliniensis. Three sets of primers were selected from different genomic sequences to specifically amplify a 516 bp fragment within the tops gene, specific for several species of the genus Candida (CCL primers); a 239 bp fragment within the $\alpha$INT1 gene, specific for Candida albicans (CAL primers); and a 175 bp fragment within the ALSD1 gene, specific for Candida dubliniensis (CDL primers). Using the primers in conjunction (multiplex PCR), we were able to detect both C. albicans and C. dubliniensis and to differentiate between them. The detection limit of the PCR assay was approximately 10 cells per milliliter of saline. Thus, this multiplex PCR assay can be applied for differentiation of C. albicans and C. dubliniensis from clinical specimens.