• 제목/요약/키워드: Soil microbiology

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Isolation, Cloning and Co-Expression of Lipase and Foldase Genes of Burkholderia territorii GP3 from Mount Papandayan Soil

  • Putra, Ludwinardo;Natadiputri, Griselda Herman;Meryandini, Anja;Suwanto, Antonius
    • Journal of Microbiology and Biotechnology
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    • v.29 no.6
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    • pp.944-951
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    • 2019
  • Lipases are industrial enzymes that catalyze both triglyceride hydrolysis and ester synthesis. The overexpression of lipase genes is considered one of the best approaches to increase the enzymatic production for industrial applications. Subfamily I.2. lipases require a chaperone or foldase in order to become a fully-activated enzyme. The goal of this research was to isolate, clone, and co-express genes that encode lipase and foldase from Burkholderia territorii GP3, a lipolytic bacterial isolate obtained from Mount Papandayan soil via growth on Soil Extract Rhodamine Agar. Genes that encode for lipase (lipBT) and foldase (lifBT) were successfully cloned from this isolate and co-expressed in the E. coli BL21 background. The highest expression was shown in E. coli BL21 (DE3) pLysS, using pET15b expression vector. LipBT was particulary unique as it showed highest activity with optimum temperature of $80^{\circ}C$ at pH 11.0. The optimum substrate for enzyme activity was $C_{10}$, which is highly stable in methanol solvent. The enzyme was strongly activated by $Ca^{2+}$, $Mg^{2+}$, and strongly inhibited by $Fe^{2+}$ and $Zn^{2+}$. In addition, the enzyme was stable and compatible in non-ionic surfactant, and was strongly incompatible in ionic surfactant.

Isolation and Characterization of Plant Growth-Promoting Bacteria for the Phytoremediation of Diesel- and Heavy Metal-Contaminated Soil

  • Yun-Yeong Lee;Kyung-Suk Cho
    • Microbiology and Biotechnology Letters
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    • v.51 no.4
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    • pp.484-499
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    • 2023
  • Plant growth-promoting (PGP) bacteria can be used as bioresources to enhance phytoremediation through their PGP traits and pollutant removal capacity. In this study, 49 rhizobacteria were primarily isolated from the rhizosphere of tall fescue grown in diesel- and heavy metal-contaminated soil. Their biosurfactant production, phosphate (P) solubilization, and siderophore production were qualitatively and quantitatively evaluated to identify superior PGP bacteria. The optimal conditions for the growth of PGP bacteria and the stability of their PGP traits were a temperature of 35℃, a pH of 7, and 2 days of cultivation time. Four superior PGP bacteria (Pseudomonas sp. NL3, Bacillus sp. NL6, Bacillus sp. LBY14, and Priestia sp. TSY6) were finally selected. Pseudomonas sp. NL3 exhibited superior biosurfactant production and P solubilization. Bacillus sp. NL6 showed the highest P solubilization and superior production of biosurfactants and siderophores. Bacillus sp. LBY14 offered the best siderophore production and impressive P solubilization. Priestia sp. TSY6 had superior capacity for all three PGP traits. Through their secretion of beneficial PGP metabolites, the four bacteria isolated in this study have the potential for use in the phytoremediation of contaminated soil.

Revegetation of a Lakeside Barren Area by the Application of Plant Growth-promoting Rhizobacteria

  • Ahn, Tae-Seok;Ka, Jong-Ok;Lee, Geon-Hyoung;Song, Hong-Gyu
    • Journal of Microbiology
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    • v.45 no.2
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    • pp.171-174
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    • 2007
  • The growth stimulation of wild plants by several bacterial species showing plant growth-promoting capabilities was examined in a barren lakeside area at Lake Paro, Korea. Microbial numbers and activities in the field soil were monitored for 73 days after inoculation of the bacteria. The acridine orange direct counts for the total soil bacterial populations ranged between $2.0-2.3{\times}10^{9}\;cells/g$ soil and $1.4-1.8{\times}10^{9}\;cells/g$ soil in the inoculated and uninoculated soils, respectively. The numbers of Pseudomonas spp., which is known as a typical plant growth-promoting rhizobacteria, and the total microbial activity were higher in the inoculated soil compared to those in the uninoculated soil. The average shoot and root lengths of the wild plants grown in the inoculated soil were 17.3 cm and 12.4 cm, respectively, and longer than those of 11.4 cm and 8.5 cm in the uninoculated soil. The total dry weight of the harvested wild plants was also higher in the inoculated soil (42.0 g) compared to the uninoculated soil (35.1 g). The plant growth-promoting capabilities of the inoculated bacteria may be used for the rapid revegetation of barren or disturbed land, and as biofertilizer in agriculture.

Comparison of metabolic diversity by sole carbon source utilization and genetic diversity by restriction patterns of amplified 16S rDNA (ARDRA)in soil bacterial communities. (토양세균 군집의 대사 다양성과 16S rDNA의 제한효소 지문분석에 의한 유전적 다양성의 비교)

  • 송인근;최영길;김유영;조홍범
    • Korean Journal of Microbiology
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    • v.35 no.1
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    • pp.72-77
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    • 1999
  • To investigate soil bacterial diversity according to vegelalioo types, utilizing ability of sole carbon sources and restriction enzyme patterns of 16s rDNA were analyzed. From the both results; five kinds of soil microbial communities were grouped as forest soil (Quercus mongolica and Pinus densi&ra vegetation), grass-agricultured soil and microbial communities of naked soil. But, both soil microbial communities of directily exlracted from ths soil and indirectly extracted from heterotrophic bacteria that cultured soil in LB medium showed very different similarity.

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Biological improvement of reclaimed tidal land soil (V) (해안간척지토양의 생물학적 토성개량에 관한 연구 5)

  • 홍순우;하영칠;이광웅
    • Korean Journal of Microbiology
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    • v.8 no.1
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    • pp.13-20
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    • 1970
  • Chenges in respiration of the soils collected from the reclaimed tidal soil in Chogi-ri, Kanghwa Island and treated with organic matters are presented. The measurement of the respiration for the smaples, which were incubated for 0,2,4 and 5 weeks, were carried out by using Warburg's respirometer. While the respirations of the samples added by organic matters were increased 6.7 - 28.0 times compared with that 0 week during the incubation in case of 5-year soil, the respiration in case of 3-year soil were increased 3.3-11.8 times. Thus, the effect of adding organic matters on the respiration of the experimented soils, as this indicates, was much higher for the soil of 5-year area than that of 30-year area. And for the organic matters Salicornia was most effective and then Suaeda and Oryzae. The samples treated with Salicornia and Suaeda showed their highest respiration rate at the 4th week, but the one with Oryzae was measured to increase progressively during 5 weeks experimented. Regarding the salinity, content of organic matters and number of bacteria, in each intact soil experimented, 5-year soil samples had much poor habitat then 30-year soil for the activity of soil microorganisms, but according to the result mentioned above, it is firmly believed that the addition of organic matters on the saline soil is one of the best means to change the reclaimed tidal land into arable land with less time duration.

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Identification of inseticidal compound SR 2077 from Actinomycetes isolate No. 2077 (방선균 분리주 No. 2077이 생산하는 살충성 물질 SR 2077의 구조 동정)

  • Oh, Sei-Ryang;Lee, Hyeong-Kyu;Choi, Soo-Keun;Kim, Jeong-Il
    • Applied Biological Chemistry
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    • v.37 no.4
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    • pp.234-236
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    • 1994
  • During the screening of insecticidal compounds from soil microorganisms, SR 2077 was isolated from the metabolites of Actinomycetes isolate No. 2077 and identified as albocycline by UV and NMR data analyses.

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Isolation of Sphinin, an Inhibitor of Sphingomyelinase, from Streptomyces sp. F50970

  • LIM, SI-KYU;WAN PARK
    • Journal of Microbiology and Biotechnology
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    • v.9 no.5
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    • pp.655-660
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    • 1999
  • Sphingomyelinase (SMase EC:3.l.4.l2) has been suggested to play important roles in the cell cycle, differentiation, apoptosis, inflammation, and the regulation of eukaryotic stress responses. SMase inhibitors may be a powerful tool to elucidate and regulate these cellular responses in which SMase involves. We first isolated an SMase inhibitor, named sphinin, from a strain of soil actinomycetes, F50970. Sphinin inhibited Mg/sup 2+/ -dependent neutral SMase from chicken embryo at 1.2 ㎍/㎖ of IC/sub 50/ Sphinin also inhibited acidic SMase, but it had no inhibitory activity on PI-PLC and PC-PLC, suggesting that sphinin is a specific inhibitor of SMase. The strain F50970 was identified as a Streptomyces sp. by its spiral spore chain, LL-diaminopimelic acid, menaquinone patterns of MK-9 (H'6) and MK-9 (H'8), FA-2c type of fatty acid pattern, and other morphological, physiological, and cultural characteristics.

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Role of Siderophores in Biocontrol of Fusarium solani and Enhanced Growth Response of Bean by Pseudomonas fluorescens GL20

  • Lim, Ho-Seong;Kim, Sang-Dal
    • Journal of Microbiology and Biotechnology
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    • v.7 no.1
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    • pp.13-20
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    • 1997
  • Plant growth-promoting Psudomonas fluorescens GL20 was isolated from a ginseng rhizosphere on chrome azurol Sagar. P. fluorescens GL20 produced a large amount of hydoxamate siderophore in an iron-deficient medium. The siderophore showed significantly high specific activity of 20.2 unit. Using an in vitro antifungal test, P. fluorescens GL20 considerably suppressed growth of phytopathogenic fungus Fusarium solani, inhibiting spore germination and germ tube elongation. In pot trials of kidney beans with P. fluorescens GL20, disease incidence was remarkably reduced up to $68{\%}$ compared with that of F. solani alone, and plant growth was also increased nearly 1.6 fold as compared to that of the untreated control, promoting elongation and development of the roots. These results indicate that the plant growth-promoting activity of P. fluorescens GL20 can play an important role in biological control of soil-borne plant disease in a rhizosphere, enhancing the growth of plants.

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