• 한국지하수토양환경학회:학술대회논문집
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• 한국지하수토양환경학회 2005년도 INTERNATIONAL SYMPOSIUM ON SOIL & GROUNDWATER ENVIRONMENT
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• pp.85-86
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• 2005

• 한국토양비료학회지
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• 제45권6호
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• pp.1073-1085
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• 2012

Soil microbial communities are immensely diverse and complex with respect to species richness and community size. These communities play essential roles in agricultural soil because they are responsible for most of the nutrient cycles in the soil and influence the plant diversity and productivity. However, the majority of these microbes remain uncharacterized because of poor culturability. Next-generation sequencing techniques have revolutionized many areas of biology by providing cheaper and faster alternatives to Sanger sequencing. Among them, amplicon pyrosequencing is a powerful tool developed by 454 Life Sciences for assessing the diversity of complex microbial communities by sequencing PCR products or amplicons. This review summarizes the current opinions in amplicon sequencing of soil microbial communities, and provides practical guidance and advice on sequence quality control, aligning, clustering, OTU- and taxon-based analysis. The last section of this article includes a few representative studies conducted using amplicon pyrosequencing.

• 한국환경농학회지
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• 제40권3호
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• pp.194-202
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• 2021

BACKGROUND: Towards achievement of sustainable agriculture, using microbial inoculants may present promising alternatives without adverse environmental effects; however, there are challenging issues that should be addressed in terms of effectiveness and ecology. Viability and stability of the bacterial inoculants would be one of the major issues in effectiveness of microbial pesticide uses, and the changes within the indigenous microbial communities by the inoculants would be an important factor influencing soil ecology. Here we investigated the stability of the introduced bacterial strains in the soils planted with barley and its effect on the diversity shifts of the rhizosphere soil bacteria. METHODS AND RESULTS: Two different types of bacterial strains of Bacillus thuringiensis and Shewanella oneidensis MR-1 were inoculated to the soils planted with barley. To monitor the stability of the inoculated bacterial strains, genes specific to the strains (XRE and mtrA) were quantified by qPCR. In addition, bacterial community analyses were performed using v3-v4 regions of 16S rRNA gene sequences from the barley rhizosphere soils, which were analyzed using Illumina MiSeq system and Mothur. Alpha- and beta-diversity analyses indicated that the inoculated rhizosphere soils were grouped apart from the uninoculated soil, and plant growth also may have affected the soil bacterial diversity. CONCLUSION: Regardless of the survival of the introduced non-native microbes, non-indigenous bacteria may influence the soil microbial community and diversity.

• Journal of Forest and Environmental Science
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• 제30권4호
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• pp.370-377
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• 2014

There are very few studies about soil chemical and biological properties under tropical dry evergreen forest Coromandel Coast, India. The present study was conducted in six tropical dry evergreen forests sites such as Oorani, Puthupet, Vadaagram, Kotthatai, Sendrakillai and Palvathunnan. We measured the quantity of soil chemical, biological properties and selected soil microorganisms for investigating the impacts of soil microbial populations on soil chemical and biological properties. The result showed that total N, P, Ca, S, Fe, Mn, Cu, Co, exchangeable K, Olson P, extractable Ca and phosphobacterial population were higher in the soil from Kothattai forest site. Organic carbon, total Mg, extractable Na, soil respiration, ${\beta}$-glucosidase activity, bacterial population, fungi population and actinomycetes population were higher in the soil from Palvathunn forest site. Total K, $NH_4{^+}$-N, $NO_3{^-}$-N, exchangeable K, extractable Ca, extractable Na, azotobacter population, bacillus population and rhizobacteria population were higher in the soil from Sendrakillai. Beijerinckia population, rhizobacteria and soluble sodium were higher in Puthupet forest soil. Total Si, total Na and exchangeable K were higher in soil from Oorani forest site. Total Mo and exchangeable K were higher in the soil from Vadaagaram forest site. The results showed that organic carbon, total N, $NH_4{^+}$-N, $NO_3{^-}$-N, extractable P, extractable Ca, soil respiration and ${\beta}$-glucosidase were significantly correlated with soil microbial populations. Therefore soil microorganisms are important factor for maintaining soil quality in tropical dry evergreen forest.

• Journal of Microbiology and Biotechnology
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• 제30권9호
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• pp.1310-1320
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• 2020

Low-quality soil for land reuse is a crucial problem in vegetation quality and especially to waste disposal sites in mining areas. It is necessary to find suitable materials to improve the soil quality and especially to increase soil microbial diversity and activity. In this study, pot experiments were conducted to investigate the effect of a mixed material of humic acid, super absorbent polymer and biochar on low-quality soil indexes and the microbial community response. The indexes included soil physicochemical properties and the corresponding plant growth. The results showed that the mixed material could improve chemical properties and physical structure of soil by increasing the bulk density, porosity, macro aggregate, and promote the mineralization of nutrient elements in soil. The best performance was achieved by adding 3 g·kg^-1 super absorbent polymer, 3 g·kg^-1 humic acid, and 10 g·kg^-1 biochar to soil with plant total nitrogen, dry weight and height increased by 85.18%, 266.41% and 74.06%, respectively. Physicochemical properties caused changes in soil microbial diversity. Acidobacteria, Bacteroidetes, Chloroflexi, Cyanobacteria, Firmicutes, Nitrospirae, Planctomycetes, and Proteobacteria were significantly positively correlated with most of the physical, chemical and plant indicators. Actinobacteria and Armatimonadetes were significantly negatively correlated with most measurement factors. Therefore, this study can contribute to improving the understanding of low-quality soil and how it affects soil microbial functions and sustainability.

• The Korean Journal of Ecology
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• 제17권2호
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• pp.171-183
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• 1994

Soil condition, total number of bacteria, soil amylase activity and microbial biomass $(CO_2-C)$ were measured at soil of different forest types. And the difference of the allelopathic effect was determined between fresh leaf extract of Quercus acutissima and Pinus rigida to the bacteria isolated from soil of different forest types. 1. Total number of bacteria in Carpinus laxiflora forest soil was 4~7 times larger than that in pinus desiflora forest soil. 2. Soil amylase activity was positively correlated with total number of soil bacteria and soil organic matter content. The amylase activity at F layer was 4~5 times larger than that at H layer, and that at H layer was 2~4 times larger than that at A layer. 3. Seasonal changes of microbial biomass showed a peak in summer, and vertical distribution of microbial biomass decreased with increasing soil depth. The microbial biomass in Pinus densiflora forest soil was larger than that in Quercus serrata forest soil. 4. Fresh leaf extract of Pinus rigida and Quercus acutissima showed an acceleration or inhibition effect on the growth of soil bacteria, and that of !. acutissima inhibited larger number of soil bacterial strains than that of P. rigida. 4.2% and 25% of soil bacterial strains isolated from soil of P. rigida and Q. acutissima forests were inhibited by fresh leaf extract of P. rigida and Q. acutissima, respectively.

• Journal of Ecology and Environment
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• 제38권4호
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• pp.443-450
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• 2015

The east coast of the Korean Peninsula is susceptible to fires because of the low rainfall in winter and spring, and large forest fires have occurred in this area. Lack of fresh water to combat fires has hampered efforts to prevent widespread forest fires in this region. Seawater has not been used as a suppressant because of possible detrimental effects of salt. We investigated the mobility of saline water in the forest soil and their effect on the microbial activity. Using a fire-fighting helicopter, seawater was sprayed over three plots (50 × 100 m) located on the eastern slope of the Baekdu mountain range in South Korea in April, 2011. We sampled the soil in April 4, May 20, and August 5 to determine the amount of salt that remained in the soil. The electrical conductivity value of the soil decreased to <400 μS/cm over a 1-month period. Approximately, four months after the application of seawater, the electrical conductivity value and Na⁺ content in all treatment plots did not significantly differ to those of the control plot, and total microbial activity also recovered to that of the control. Our results indicate that the amount of rainfall, soil physical-chemical properties, and topological factors may be a critical factor determining the mobility of saline water in forest soil.

• 한국환경생태학회지
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• 제29권2호
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• pp.279-291
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• 2015

This study analyzed the growth characteristics of multi-layer planted trees through their growth analysis and attempted to present a management strategy. The subject of research is the Citizen's Forest Area of Seoul Forest Park located in Seoul City. Field surveys were conducted three times over eight years from 2005 when the Seoul Forest Park was created through 2013. Labels were attached to all trees in the target area, and their species, height and DBH were investigated. To identify the growth differences by trees in each area, a detailed tree location map was drawn up for use in the analysis. To check soil health, soil organic matter, soil pH and soil microbial activities were analyzed. It turned out that the growth of the multi-layer planted trees in the target area of research was higher than that of the trees in existing urban parks, and that it was similar to that of trees in natural forests. Through a field survey in the area with a remarkably low growth, high-density planting problem, soil was found to have excess-moisture and there was the problem of Pueraria lobata covering. As a result of the analysis of the soil, it was found that its organic content in the soil was lower; soil pH was higher; and microbial activities in the soil were lower when compared to that of natural forests.

• Ecology and Resilient Infrastructure
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• 제2권3호
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• pp.247-254
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• 2015

Changes in land-use type can affect soil and water properties in stream ecosystems. This study examined the effects of different land-use types on biogeochemical properties and microbial activities of a stream. We collected water and sediment samples in a stream at three different sites surrounded by varying land-use types; a forest, a radish field and a rice paddy. Nitrogen contents, such as nitrate, nitrite and total nitrogen in the stream water body, showed significant differences among the sampling sites. The highest nitrogen values were recorded at the site surrounded by cropland, as fertilizer runoff impacted the stream. Soil organic matter content in the sediment showed significant differences among sites, with the highest content exhibited at the forest mouth site. These differences might be due to the organic matter in surrounding terrestrial ecosystems. Microbial activities determined by extracellular enzyme activities showed similar values throughout all sites in the water body; however, the activities in the sediments exhibited the highest values near the forest site and mirrored the soil organic matter content values. From these results, we conclude that different land-use types are important factors affecting water and sediment properties in stream ecosystems.

• The Korean Journal of Ecology
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• 제18권4호
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• pp.503-512
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• 1995

The present paper describes partial results of the study on the activities of microbes in the soil of Quercus mongolica forest from July, 1994 to April, 1995. To determine the relationship between structure and function of soil microbial ecosystem, the author investigated the seasonal change of physical environmental factors, microbial population and soil enzyme activities. The changes of pH was not significant and the temperature of surface soil was 2℃ higher than lower soil through out the year. Moisture contents (％) of soil samples ranged from 7.64％ to 42.11％. However, soils of site 3 at Mt. Komdan in which vegetation is successional have higher moisture content than the others. The bacterial population increased in summer, but continuously decreased in autumn and winter, and then reincreased again in spring. Bacterial population of surface soil was higher than those of 30 cm depth all the year round. Dehydrogenase activity (DHA) was about two-fold higher throughout in surface soil compared to those of lower soil. And the correlation coefficient between DHA and bacterial population size was 0,713, It was suggested that DHA could be used as a primary index of soil microbial population and activity in soil ecosystem.