• Title/Summary/Keyword: Soil composition

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Comparison of bacterial communities in leachate from decomposing bovine carcasses

  • Yang, Seung Hak;Ahn, Hee Kwon;Kim, Bong Soo;Chang, Sun Sik;Chung, Ki Yong;Lee, Eun Mi;Ki, Kwang Seok;Kwon, Eung Gi
    • Asian-Australasian Journal of Animal Sciences
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    • v.30 no.11
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    • pp.1660-1666
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    • 2017
  • Objective: Burial is associated with environmental effects such as the contamination of ground or surface water with biological materials generated during the decomposition process. Therefore, bacterial communities in leachates originating from the decomposing bovine carcasses were investigated. Methods: To understand the process of bovine (Hanwoo) carcass decomposition, we simulated burial using a lab-scale reactor with a volume of $5.15m^3$. Leachate samples from 3 carcasses were collected using a peristaltic pump once a month for a period of 5 months, and bacterial communities in samples were identified by pyrosequencing of the 16S rRNA gene. Results: We obtained a total of 110,442 reads from the triplicate samples of various sampling time points (total of 15 samples), and found that the phylum Firmicutes was dominant at most sampling times. Differences in the bacterial communities at the various time points were observed among the triplicate samples. The bacterial communities sampled at 4 months showed the most different compositions. The genera Pseudomonas and Psychrobacter in the phylum Proteobacteria were dominant in all of the samples obtained after 3 months. Bacillaceae, Clostridium, and Clostridiales were found to be predominant after 4 months in the leachate from one carcass, whereas Planococcaceae was found to be a dominant in samples obtained at the first and second months from the other two carcasses. The results showed that potentially pathogenic microbes such as Clostridium derived from bovine leachate could dominate the soil environment of a burial site. Conclusion: Our results indicated that the composition of bacterial communities in leachates of a decomposing bovine shifted continuously during the experimental period, with significant changes detected after 4 months of burial.

Purification and characterization of antifungal compounds produced by Bacillus subtilis KS1 (Bacillus subtilis KS1이 생산하는 항진균물질의 정제 및 특성)

  • Ryoo, Sung-Woo;Maeng, Hack-Young;Maeng, Pil-Jae
    • The Korean Journal of Mycology
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    • v.24 no.4 s.79
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    • pp.293-304
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    • 1996
  • A bacterial strain, KSl, possessing strong antifungal activity was isolated from soil samples of ginseng fields and identified as Bacillus subtilis. In greenhouse test, the culture filtrate of B. subtilis KS1 showed strong protective effect against several fungal diseases of agricultural plants such as cucumber gray mold and wheat leaf rust. In addition, the crude butanol fraction of the culture filtrate exhibited antagonistic effect against several fungi including plant or human pathogens, such as Botrytis maydis, Chytridium lagenarium and Candida albicans. The antifungal compound, SW1, produced by B. subtilis KS1 was purified through consecutive chromatographic separations on a pep-RPC column and a ${\mu}$ Bondapak $C_{18}$ reverse phase column. Temperature and pH showed little effect on the stability of the compound in the ranges $-20-121^{\circ}C$ and pH 4.0-10.0, respectively. The composition and structural characteristics of SW1 were analysed by HPLC and by $^1H-,\;^1H-^1H-COSY$, NOESY, COSY-NOESY and HOHAHA NMR spectroscopy, respectively, which revealed that the compound belongs to iturin A, a typical cyclic antifungal compound produced by B. subtilis. In contrast to the previously reported iturin A compounds which have one or no $-CH_3$ side chain in the hydrophobic hydrocarbon chain of ${\beta}-amino$ acids, SW1 was shown to have a ${\beta}-amino$ acid containing 12-carbon skeleton with two $-CH_3$ side chains.

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Biological and Physico-chemical Properties of Antifungal Cyclic Lipopeptides Produced by Pseudomonas cepacia Strains (Pseudomonas cepacia 균주가 생산하는 항진균성 Cyclic Lipopeptide의 생물학적 및 물리 화학적 특성)

  • Kim, Sung-Ho;Lee, Min-Woong
    • The Korean Journal of Mycology
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    • v.24 no.4 s.79
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    • pp.310-321
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    • 1996
  • Five strains AF027, AF069, AF2001, AF2011 and SD02 of Pseudomonas cepacia were isolated from soil, and the antifungal cyclic lipopeptides(CLP) i.e, CLP027A, CLP069A, Cepacidine A, CLP2011A and CLP02A were produced from each strains, respectively. Nitrogen and carbon sources in media were proved to be important factors for the production of CLP and among them, polypeptone-S, glucose and fructose were the most effective. It appeared that compounds CLP027A and CLP069A were identical with Cepacidine A and Xylocandine A, respectively. contain aspartic acid as amino acid component, are differentiated from Xylocandine A containing asparagine. Although molecular weight, amino acid composition and UV spectrum of CLP2011A and CLP02A are same with those of Cepacidine A, it is postulated that these compounds are not identical with Cepacidine A when the antifungal spectra and antifungal activity were compared to those of Cepacidine A.

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Characteristics of PM Chemical Component during Haze Episode and Asian Dust at Gwang-ju (광주지역 고농도 및 황사 시의 미세먼지 화학적 성분 특성)

  • Lee, Yeong-Jae;Jung, Sun-A;Jo, Mi-Ra;Kim, Sun-Jung;Park, Mi-Kyung;Ahn, Joon-Young;Lyu, Young-Sook;Choi, Won-Jun;Hong, You-Deog;Han, Jin-Seok;Lim, Jae-Hyun
    • Journal of Korean Society for Atmospheric Environment
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    • v.30 no.5
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    • pp.434-448
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    • 2014
  • The aerosol characteristics between haze episode and Asian dust event were identified in January and March, 2013 in Gwang-ju of Korea to investigate the metal elements, ionic concentrations and carbonaceous particles of $PM_{2.5}$ and $PM_{10}$. In the haze episode, the concentrations were increased 1~3.2 times of ionic species and 1.6~2.7 of metal elements. Especially, the concentration of $NO{_3}{^-}$, $SO{_4}{^2-}$ and $NH{_4}{^+}$ consists of 50 percent in ionic species during haze episode that was higher than Asian dust event. This suggests that secondary aerosols from anthropogenic air pollution were mainly contributed by haze episode. During the Asian dust event, increase of metal concentrations was higher than haze episode because of remarkable increase of Ti, K and Fe originated from soil. The concentrations of carbonaceous particles were increased 2.5 times during haze episode, and 2.4 times of OC and 2.1 times of EC during Asian dust event in $PM_{2.5}$. However, these aerosol mass concentration does not affect the OC/EC ratio. The average equivalence ratios of cations/anions in $PM_{2.5}$ were 0.99 in haze episodes and 0.94 during non-event day. The neutralization factor of $NH_3$ was higher than that of $CaCO_3$. Futhermore, $NH{_4}{^+}$ aerosol was aged due to atmospheric stagnation that might be affected by the haze episode.

Optimal Culture Conditions on the Keratinase Production by Bacillus sp. SH-517. (Bacillus sp. SH-517에 의한 keratinase의 생성 최적 배양 조건)

  • Bang, Byung-Ho;Rhee, Moon-Soo;Lim, Ki-Hwan;Yi, Dong-Heui
    • Journal of Life Science
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    • v.18 no.6
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    • pp.839-844
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    • 2008
  • A strain SH-517 which produce extracellular keratinase, was isolated from the soil of a poultry waste and a poultry factory. An isolate SH-517 was identified as Bacillus sp. based on its morphological and biochemical characteristics. The optimal culture conditions for the production of keratinase by Bacillus sp. SH-517 were investigated. The optimal medium composition for keratinase production was determined to be 2.0% chicken feather as carbon source, 0.5% beef extract as organic nitrogen source, 0.5% $KNO_3$ as inorganic nitrogen source and 0.06% KCl, 0.05% NaCl, 0.04% $KH_2PO_4$, 0.03% $K_2HPO_4$ as mineral source and 0.01% yeast extract as growth factor. The optimal temperature and pH of medium were shown $40^{\circ}C$ and 8.5 with shaking culture (180 rpm/min), respectively. The maximum keratinase production reached maximum of 125 units/ml/min after 42 hr of cultivation under the optimal culturing conditions.

Production of Single-Cell Protein on Petroleum Hydrocarbon -II. On the Growth of Candida tropicalis KIST 359- (석유탄화수소를 이용한 단세포단백질의 생산에 관한연구 -II. Candida tropialis KIST 359 에 대하여-)

  • Park, Yoong;Mheen, Tae-Ick;Pyun, Yoo-Ryang;Kwon, Tai-Wan
    • Korean Journal of Food Science and Technology
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    • v.2 no.2
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    • pp.61-67
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    • 1970
  • The growth characteristics of Candida tropicalis KIST 359, isolated from soil samples collected at an oil depot in Korea, have been studied by cultivating batches under varying conditions. The conclusions of the study were: 1. The yeast easily assimilates hydrocarbons in a range of $C_{14}-C_{17}$, and the optimum cultivation temperature and pH are $30^{\circ}C$ and 5.5, respectively. 2. Using this strain of micro-organism, gas oil gives a higher cell yield than kerosine and with gas oil except urea all other nitrogen sources $(NH_4NO_3,\;NH_4Cl,\;(NH_4)_2SO_4\;and\;(NH_4)_2HPO_4)$ similarly support a satisfactory growth of the yeast. 3. The highest yield is obtained with a gas oil level of 10%(v/v), and concentrations of nitrogen source and $MgSO_4{\cdot}7H_2O$ of 0.5 and 0.05%(w/v), respectively. 4. The protein content of dried yeast cells is 59.8%. Its amino acid composition can be compared well with that of FAO provisional patterns, but with a low methionine and a high lysine content.

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Suppression of Nitrate Accumulation in Vegetables by Foliar Application of Micronutrients (미량원소 엽면 처리에 의한 엽채류의 질산태 질소 축적 억제)

  • Eom, Jin-Sup;Park, Nu-Ri;Park, Sang-Gyu;Park, Shin;Chung, Jong-Bae
    • Applied Biological Chemistry
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    • v.44 no.4
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    • pp.240-245
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    • 2001
  • Suppression of nitrate accumulation in vegetables through foliar application of micronutrients was investigated. Spinach and lettuce were grown in pots under greenhouse condition. Micronutrient solutions containing Cu, Mn, Mo, and Zn were used; chitosan was added into one and the other contained chitosan oligomers. The micronutrient solutions were sprayed on the leaves at 3 and 4 weeks after transplanting of 20-day-old seedlings. Plants were harvested at 5-weeks after transplanting. Yield, contents of chlorophyll, Brix value, micronutrient, and nitrate, and nitrate reductase activity were measured. Fresh weights of lettuce and spinach were significantly increased by the foliar application of micronutrients. Contents of chlorophyll and micronutrients were higher in micronutrient-treated plants, while those of nitrate were reduced by about 10 and 14-23% in lettuce and spinach, respectively. Compared to the control plants, nitrate reductase activity was higher in plants treated with micronutrients. Results of this study indicate the effect of micronutrients on the suppression of nitrate accumulation was relatively small in comparison to the contents of nitrate in leaves of spinach and lettuce. To maximize the effect, nutrient composition in solution, application time, and frequency should be further examined, taking into consideration nitrogen level in soil and other environmental factors including light condition.

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Analysis of Biodiversity and Ecological Characteristics on Tamjin-river Estuarine Ecosytem (탐진강 하구역의 생물다양성과 생태적 특성 분석 연구)

  • Lim, Jeongcheol;Kim, Taesung
    • Journal of Wetlands Research
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    • v.20 no.2
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    • pp.181-189
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    • 2018
  • This study was performed to analyze the dynamics and distributional condition of biological community and to support the basic information about the estuarine ecosystem management by using the intensively surveyed results by each taxon experts around Tamjin river. We analyzed the biological diversity, abundance, correlation among species, and ecological characteristics about 11 taxa groups including vegetation, fish, birds, mammals, etc. in the Tamjin river estuarine ecosystem. We classified vegetation types into 7 physiognomic types and 18 communities according to habitat conditions with the physical environments and salinity. In total, 1125 species including 9 species of endangered species were identified in research area. The species composition and distributional characteristics of each taxon were corresponded to the environmental characteristics of the estuarine ecosystem. Especially, the species diversity and distribution were clearly distinguished in the river according to the difference of the environmental factors such as flow rate, salinity, and soil. Despite the disturbance factors such as barrage and levees, the biodiversity and its distribution were evaluated to be high level under the current environmental conditions. However, loss or reduction of wildlife habitat due to reclamation, embankment, barrage installation and expansion of farmland has been identified as a major threat to the diversity and health of the local ecosystem. The results of this study can be used as a basic data to cope with various development pressure and damage crisis of the whole estuaries including Tamjin river.

Material Characteristics and Making Techniques of the Goryeo Roof Tiles from Oegol Site of Tangjeong Area in Asan, Korea (아산 탕정지구 외골유적 출토 고려 기와의 재료과학적 특성과 제작기법)

  • Kim, Ji-Young;Lee, Chan-Hee;Cho, Seon-Yeong;Gim, Ran-Hui;Lee, Ho-Hyeong
    • Journal of Conservation Science
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    • v.25 no.3
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    • pp.299-316
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    • 2009
  • The Goryeo roof tiles from the Oegol site in Tangjeong, Asan are classified into three groups in color such as gray, red yellow and gray-yellow groups, respectively. While each group of tiles shows characteristic specific gravity, absorption ratio, LOI and vitrification degree, mineral content and distribution, and chemical composition are generally homogeneous among all groups of roof tiles. Also, all roof tiles and soils from the site show similar geochemical behavior of elements and clay-mineralization degree. This indicates that the soil from the site is probable to be a raw material of the roof tiles. Firing temperature of the roof tiles is estimated as 950 to $1,050^{\circ}C$ for the gray group, 800 to $900^{\circ}C$ for the red yellow group, and 900 to $950^{\circ}C$ for the gray-yellow group. In conclusion, roof tiles from the Oegol site is interpreted to be made of local clay without additive minerals, applying various firing conditions and standardized purifying process of raw clay materials.

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Effect of Extraction Methods on the Extraction Yield of Total Lipid and Arachidonic Acid from Single Cell Oil, Mortierella sp. (추출방법이 모르티에렐라(Mortierella)속 유래 단세포유지 지방질과 아라키돈산 추출 수율에 미치는 영향)

  • Kim, Sun-Ki;Chung, Guk-Hoon;Han, Jeong-Jun;Cho, Sang Woo;Yoon, Suk Hoo
    • Korean Journal of Food Science and Technology
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    • v.47 no.3
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    • pp.281-285
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    • 2015
  • An oleaginous fungus was isolated from soil and identified as Mortierella sp. (M-12) for producing arachidonic acid (AA). Cell disruption methods, extraction methods, and particle sizes of freeze-dried biomass were tested to achieve maximum extraction of total lipids and AA. M-12 grown in glucose yeast media at $25^{\circ}C$ for 7 days contained 35.5% total lipid, and 47% of the total lipid was AA. Lipid extraction yield from wet biomass was shown to be similar to that in a dry state. Maximum lipid extraction was achieved using a mixture of chloroform and methanol (2:1) as an extraction solvent. Different mechanical cell disruption methods did not affect lipid extraction yields. The smaller the particle size of the biomass, the better the lipid extraction yield was observed. Particle size of biomass was shown to more strongly affect lipid extraction than extraction time. The highest AA content was observed in the class of neutral lipids.