• Title/Summary/Keyword: Software Tools

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TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data

  • Lim, Jae Hyun;Lee, Soo Youn;Kim, Ju Han
    • Genomics & Informatics
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    • v.15 no.1
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    • pp.51-53
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    • 2017
  • High-throughput transcriptome sequencing, also known as RNA sequencing (RNA-Seq), is a standard technology for measuring gene expression with unprecedented accuracy. Numerous bioconductor packages have been developed for the statistical analysis of RNA-Seq data. However, these tools focus on specific aspects of the data analysis pipeline, and are difficult to appropriately integrate with one another due to their disparate data structures and processing methods. They also lack visualization methods to confirm the integrity of the data and the process. In this paper, we propose an R-based RNA-Seq analysis pipeline called TRAPR, an integrated tool that facilitates the statistical analysis and visualization of RNA-Seq expression data. TRAPR provides various functions for data management, the filtering of low-quality data, normalization, transformation, statistical analysis, data visualization, and result visualization that allow researchers to build customized analysis pipelines.

Bandgap capability of hybrid Kirigami inspired cellular structures

  • Del Broccolo, S.;Ouisse, M.;Foltete, E.;Scarpa, F.
    • Advances in aircraft and spacecraft science
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    • v.6 no.6
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    • pp.479-495
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    • 2019
  • Periodic cellular core structures included in sandwich panels possess good stiffness while saving weight and only lately their potential to act as passive vibration filters is increasingly being studied. Classical homogeneous honeycombs show poor vibracoustic performance and only by varying certain geometrical features, a shift and/or variation in bandgap frequency range occurs. This work aims to investigate the vibration filtering properties of the AUXHEX "hybrid" core, which is a cellular structure containing cells of different shapes. Numerical simulations are carried out using two different approaches. The first technique used is the harmonic analysis with commercially available software, and the second one, which has been proved to be computationally more efficient, consists in the Wave Finite Element Method (WFEM), which still makes use of finite elements (FEM) packages, but instead of working with large models, it exploits the periodicity of the structure by analysing only the unit cell, thanks to the Floquet-Bloch theorem. Both techniques allow to produce graphs such as frequency response plots (FRF's) and dispersion curves, which are powerful tools used to identify the spectral bandgap signature of the considered structure. The hybrid cellular core pattern AUXHEX is analysed and results are discussed, focusing the investigation on the possible spectral bandgap signature heritage that a hybrid core experiences from their "parents" homogeneous cell cores.

Educational Utilization of Microsoft Powerpoint for Oral and Maxillofacial Cancer Presentations

  • Carvalho, Francisco Samuel Rodrigues;Chaves, Filipe Nobre;Soares, Eduardo Costa Studart;Pereira, Karuza Maria Alves;Ribeiro, Thyciana Rodrigues;Fonteles, Cristiane Sa Roriz;Costa, Fabio Wildson Gurgel
    • Asian Pacific Journal of Cancer Prevention
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    • v.17 no.4
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    • pp.2337-2339
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    • 2016
  • Electronic presentations have become useful tools for surgeons, other clinicians and patients, facilitating medical and legal support and scientific research. Microsoft(R) PowerPoint is by far and away the most commonly used computer-based presentation package. Setting up surgical clinical cases with PowerPoint makes it easy to register and follow patients for the purpose of discussion of treatment plan or scientific presentations. It facilitates communication between professionals, supervising clinical cases and teaching. It is ofter useful to create a template to standardize the presentation, offered by the software through the slide master. The purpose of this paper was to show a simple and practical method for creating a Microsoft(R) PowerPoint template for use in presentations comcerning oral and maxillofacial cancer.

Reflective Model of Brand Awareness on Repurchase Intention and Customer Satisfaction

  • ILYAS, Gunawan Bata;RAHMI, Sri;TAMSAH, Hasmin;MUNIR, Abdul Razak;PUTRA, Aditya Halim Perdana Kusuma
    • The Journal of Asian Finance, Economics and Business
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    • v.7 no.9
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    • pp.427-438
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    • 2020
  • This study aims to analyze and confirm brand awareness' role in influencing the repurchase intention both directly and indirectly on customer satisfaction variables and repurchase intention variables. The contribution brought by this study is to reflect manifest variables such as recall, purchase, and consumption. The number of respondents in this study was 200 samples using the online survey data collection method (Google form), while the research approach is quantitative explanatory. The data analysis test tools include the Structural Equation Modeling (SEM) approach with AMOS as a statistical data analysis software and Sobel test to indirectly test the relationship. This study consists of four hypotheses, of which three hypotheses are positively and significantly related (brand awareness on repurchase intention, brand awareness on customer satisfaction, and customer satisfaction on repurchase intention). Through indirect relationship, namely, brand awareness on repurchase intention through customer satisfaction, the study showed no significant effect. In a comprehensive way, this study emphasizes the factor of customer satisfaction as a determinant of consumer loyalty and repurchase intention. Therefore, creating optimal customer satisfaction, service excellence, promotion and massive advertising, guaranteeing the safety and ease-of-use apps, and ease of shopping, especially for e-commerce industry, is a serious concern.

A Study on Establishment of Regional Information System for Regional Equal Development (지역균형발전을 위한 지역정보체계의 구축에 관한 연구)

  • 황명린;최상철;조주현
    • Journal of the Korean Regional Science Association
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    • v.8 no.1
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    • pp.99-118
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    • 1992
  • In spite of the rapid development of information and computer technology, the software side of those technologies has not been well studied especially in the area of regional planning. Throughout this study we identified some critical facts as below: 1) the necessity of region-specific information which is vital for urban and regional development, 2) the necessity of integration of information system into a regional unit rather than setoral unit, 3) aggravated regional inequality through the spread of communication and computing tools, and 4) advanced regional information system linking satellite and graphic computers in developed countries. From these facts, we recommend some policy directions as below: 1) It is desperately needed to establish a regional information center covering large administrative area. 2) In establishing these system, we can utilize existing communication network or estblish a brand new system. Utilization of existing administrative network and board of statistics for data collection and management, and the utilization of postal office or telephone company for distribution are recommended through the evaluation of those two alternatives, 3) It is also recommended that one-step data collection system should be established. 4) The Dat Base should be organized in many steps in close relationship with development goal and planning process. In order to make most use of this system, we need to develop a monitoring system, regional indicators and ex-ante impact studies.

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An experimental study on the oriented mechanical properties of aluminum micro thin foil material (알루미늄 마이크로 박판소재의 방향성에 관한 실험적 연구)

  • Lee H. J.;Lee N. K.;Choi S.;Lee H. W.;Choi T. H.;Hwang J. H.;Kwag D. G.
    • Proceedings of the Korean Society for Technology of Plasticity Conference
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    • 2005.10a
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    • pp.295-298
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    • 2005
  • This paper is concerned with the precision material property measurement of a micro metal thin foil that is used in MEMS technology. Since these MEMS components require great precision and accuracy, evaluation of reliability such as the lift cycle endurance test, impact test, and residual stress test is necessary for these components. However, in practice, real reliability tests are not easy to perform due to consideration of various factors. Rather than actual testing, it would be much easier to evaluate the reliability of components by the analytical approach. Although the analytical method is utilized by software tools, it is obviously necessary to acquire fundamental properties of materials through real test methods. In this paper, the oriented mechanical properties of aluminum thin foil are measured by nano scale material property measurement system.

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FATIGUE SIMULATION OF POWER TRAIN COMPONENTS DURING THE DESIGN PROCESS

  • Steiner, W.;Steinwender, G.;Unger, B.
    • International Journal of Automotive Technology
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    • v.2 no.1
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    • pp.9-16
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    • 2001
  • The lifetime of power train components can be improved dramatically by finding crack initiation points with suitable software tools and optimization of the critical areas. With increasing capacities of computers the prediction of the lifetime for components by numerical methods gets more and more important. This paper discusses some applications of the outstanding fatigue simulation program FEMFAT supporting the assessment of uniaxially and multiaxially loaded components (as well as welding seams and spot joints). The theory applied in FEMFAT differs in some aspects from classical approaches like the nominal stress concept or the local one and can be characterized by the term "influence parameter method". The specimen S/N-curve is locally modified by different influence parameters as stress-gradient to take into account notch effects, mean-stress influence which is quantified by means of a Haigh-diagram, surface roughness and treatments, temperature, technological size, etc. It is possible to consider plastic deformations resulting in mean-stress rearrangements. The dynamic loading of power train components is very often multiaxial, e.g. the stress state at each time is not proportional to one single stress state. Hence, the directions of the principal axes vary with time. We will present the way how such complex load situations can be handled with FEMFAT by the examples of a crank case and a gear box.

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Scan Modeling and Performance Analysis for Extensive Terminal Information Identification (광범위한 단말 정보 식별을 위한 스캔 모델링 및 성능 분석)

  • Im, Sun-young;Shin, Seung-hun;Roh, Byeong-hee;Lee, Jung-tae
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.42 no.4
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    • pp.785-790
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    • 2017
  • Network scanning tools typically use port scans to steal information from network terminals and identify vulnerabilities. In particular, Shodan and Censys use a network scanning tool to gather a wide range of terminal information, store it in their database and provide it to the users. In order to prevent such information gathering, it is required to know the scanning methods of Shodan and Censys. However, the scanning model used by Shodan and Censys is not known exactly. Therefore, this paper estimates scanning models of Shodan and Censys and analyzes the performance of each models.

Study on Corrosion Law of Large Crude Oil Storage Tank Floor and Risk-Based Inspection and Maintenance Technology

  • Luo, Fang-Wei;Ran, Ran;Wang, Lei
    • Corrosion Science and Technology
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    • v.19 no.2
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    • pp.66-74
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    • 2020
  • In this paper, the author's team has carried out a comparative experimental study on the corrosion characteristics of Q235 steel commonly used in large-scale storage tanks under the specific bottom water environment found with Russian and Daqing crude oil. It was found that there is a certain degree of uniform or local corrosion on the tank floor depending on the kind of bottom water. The bottom water corrosion of Daqing crude oil is a uniform corrosion caused by carbon dioxide. While the Russian crude oil bottom water corrosion is clearly local corrosion caused by co-corrosion of carbon dioxide and hydrogen sulfide, here the corrosion rate is obviously higher than that caused by Daqing crude oil. There are two modes of storage tank inspection and maintenance that have been currently adopted by Chinese refining and chemical enterprises: a regular inspection mode and a API581-2016 risk-based detection mode. These modes have been effectively combined to form an intelligent tank inspection and maintenance mode, software tools to support this intelligent inspection and maintenance management have been developed.

A Comparative Study on the Performance of Intrusion Detection using Decision Tree and Artificial Neural Network Models (의사결정트리와 인공 신경망 기법을 이용한 침입탐지 효율성 비교 연구)

  • Jo, Seongrae;Sung, Haengnam;Ahn, Byunghyuk
    • Journal of Korea Society of Digital Industry and Information Management
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    • v.11 no.4
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    • pp.33-45
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    • 2015
  • Currently, Internet is used an essential tool in the business area. Despite this importance, there is a risk of network attacks attempting collection of fraudulence, private information, and cyber terrorism. Firewalls and IDS(Intrusion Detection System) are tools against those attacks. IDS is used to determine whether a network data is a network attack. IDS analyzes the network data using various techniques including expert system, data mining, and state transition analysis. This paper tries to compare the performance of two data mining models in detecting network attacks. They are decision tree (C4.5), and neural network (FANN model). I trained and tested these models with data and measured the effectiveness in terms of detection accuracy, detection rate, and false alarm rate. This paper tries to find out which model is effective in intrusion detection. In the analysis, I used KDD Cup 99 data which is a benchmark data in intrusion detection research. I used an open source Weka software for C4.5 model, and C++ code available for FANN model.