• Mycobiology
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• v.32 no.2
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• pp.57-67
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• 2004

For investigation of the species diversity of the Genus Crepidotus in Korea and constructing a key to Korean Crepidotus species, a total of 65 specimens, collected from 18 locations from 1982 to 2002, were observed for morphological characters of carpophores and other features. All the specimens have been preserved in the herbarium of the National Institute of Agricultural Sciences and Technology, R.D.A., Suwon, Korea. The specimens were identified according to the classification systems given by Hesler and Smith(1965), Nordstein(1990), Orton(1960), Pilat(1948), Senn-Irlet(1991, 1992, 1993) and Singer(1951, 1973, 1986). In this study, a total of 10 Crepidotus species were confirmed. Among them, Korean common names were designated to six unrecorded species as follows: C. uber, "끈적귀버섯"; C. hygrophanus, "곤약귀버섯"; C. latifolius, "꼬마무리귀버섯"; C. obscurus, "먼지귀버섯"; C. subverrucisporus, "분홍주름귀버섯"; and C. circinatus, "노란고리귀버섯". A key to 10 Crepidotus species has been constructed.

• Journal of Species Research
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• v.1 no.1
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• pp.78-86
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• 2012

Three ciliate species of genus Cyrtohymena, C. australis Foissner, 1995, C. citrina (Berger & Foissner, 1987) and C. muscorum (Kahl, 1932) new to Korea, were collected from semi-terrestrial habitats. The description was based on the observation of live and silver stained specimens. Diagnostic characteristics of these species are as follows. C. autralis: size about $275{\times}100{\mu}m$ in live specimens. Cortical granules yellowish. 18-31 right and 31-40 left marginal cirri in number. Dorsal kineties eight rows. C. citrina: size about $180{\times}50{\mu}m$ in live specimens. Cortical granules yellowish. 26-32 right and 23-27 left marginal cirri in number. Dorsal kineties five to six rows. C. muscorum: size about $180{\times}60{\mu}m$ in live specimens. Cortical granules reddish. 31-34 right and 33-36 left marginal cirri in number. Dorsal kineties six rows. Three species of Cyrtohymena have been added to Korean ciliate fauna from this study. Including previous one species of C. quadrinucleata, four species of this genus in total have been recorded so far in this country.

• Animal cells and systems
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• v.3 no.4
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• pp.347-354
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• 1999

Ten Korean eumenine wasp species of the genus Stenodynerus, including one new species and six newly recorded species (Stenodynerus chinensis simillimus, S. coreanus, S. clypeopictus, S. funebris, S. frauenfeldi, S. Kalinowskii, S. pappi, S. pullus, S. tergitus sp. nov., S. tokyanus) from Korea were taxonomically reviewed. The male of S. pappi was collected for the first time. Additional characters to distinguish several congeners were also discussed.

• Asian Journal of Turfgrass Science
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• v.7 no.2_3
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• pp.113-120
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• 1993

Dictyostelid cellular slime molds were quantitatibly isolated from Korean lawngrass turf in Seoul National University, Korea, by the 'Clonal Isolation Technique(Cavender and Raper, 1965a)'. Total six species were found. These are Dictyostelium sphaerocephalum. D. purpuream. D. flavidam, D. crassica ale, Polysphondilium pallidum. P. violaceum. D. sphaerocephalum was the dominant species and P. violaceum, D. flaviidum, D. crassicaule were rare. Compared with other region, species diversity and species richness of Korean lawngrass turf appeared to he low. The dominant species, however, is not very common in other plant communities, so it cnay he characteristic of Korean lawngrass turf.

• Asian Journal of Turfgrass Science
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• v.10 no.3
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• pp.213-230
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• 1996

A study of occurrence and distribution of cellular slime molds(CSMs) in forest soils of central areas of Korea was carried out. Samples for CSMs isolation were collected from 4 study sites; Mt.Kyeryong, Mt. Taebaek, Mt. Sobaek and Mt. Sokri. In Mt. Kyeryong, six species were found. These were Dictyostelium fasciculatum, D.firmibasis, D. mucoroides, D. minutum, D. brefeldianum and Polysphondylium pallidum. The average number of species isolated at one site was 0.75, and average density(clones /g soil) was 292. The results of soil sample analyses were that the concentration of Pb was higher than any other areas. In Mt. Taebaek, seven species were found; D. fasciculatum, D.firmibasis, D. mucoroides, D. miuutum, P.pallidum. P. violaceum, P. candidum. The average number of species isolated at one site was 2.3,and average density was 1,108. Based on importance values calculated from study sites within each of three elevation ranges, several of the more widely distributed and abundant species have distribution patterns that show a response to elevation. In Mt. Sobaek, eleven species were found. These were D. fasciculatum. D.firmibasis, D. mucoroides, D. miuutum, D. brefeldianum, D. crassicaule,D. deminutivum, D. implicatum, P. pallidum. P. violaceum and P. candidum. The average number of species isolated at one site was 3, and average density was 793. Species diversity appeared to be the highest in this area. In Mt. Sokri, six species were found. These were D. fasciculatum. D. mucoroides, D. minutum, D. purpureum, P. pallidum. and P. violaceum. The average number of species isolated at one site was 2.4 and average density was 858. It was noticeable that D.purpureum were much more comrnonly found in this pinus evergreen forest. Key words: Cellular slime molds(CSMs), Importance value, Elevation, Average number of species, Average density.

• Korean Journal of Environment and Ecology
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• v.32 no.3
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• pp.289-302
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• 2018

The study investigated the forest vegetation in 59 plots between June 2017 and August 2017 to understand the forest vegetation structure of the protected zone for forest genetic resource conservation (forest genetic resource reserve area) in Heuksando Island. We classified the vegetation using the Z-M phytosociological method analyzed the importance value and species diversity of each vegetation classification. The analysis showed the Camellia japonica community group at a top level of forest vegetation hierarchy. In the level of community, it was classified into Dendropanax morbiferus community (Vegetation unit 1; VU 1), Carpinus turczaninowii community, and C. japonica typical community (VU 6). C. turczaninowii community was subdivided into Buxus koreana group (VU 2), Rhododendron mucronulatum group (VU 3), Vitis amurensis group (VU 4) and C. turczaninowii typical group (VU 5). Therefore, it was classified into a total of six vegetation units (one community group, three communities, and four groups). The analysis of the mean codominant value of each VU show that Quercus acuta was the highest in VU 1, C. turczaninowii in VU 2, Pinus thunbergii in VU 3, Pinus densiflora in VU 4, and Castanopsis sieboldii in VU 5 and VU 6. The analysis of species diversity showed that VU 2 was the highest among six units in species richness index, species diversity index, and species evenness index. VU 6 showed the highest among six units in species dominance index. In conclusion, a synecology approach to manage six units and twelve species groups was needed for the forest vegetation of Heuksando Island protected area for forest genetic resource conservation.

• The Plant Pathology Journal
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• v.38 no.1
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• pp.12-24
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• 2022

In this study, we conducted whole-genome sequencing with six species of Pectobacterium composed of seven strains, JR1.1, BP201601.1, JK2.1, HNP201719, MYP201603, PZ1, and HC, for the analysis of pathogenic factors associated with the genome of Pectobacterium. The genome sizes ranged from 4,724,337 bp to 5,208,618 bp, with the GC content ranging from 50.4% to 52.3%. The average nucleotide identity was 98% among the two Pectobacterium species and ranged from 88% to 96% among the remaining six species. A similar distribution was observed in the carbohydrate-active enzymes (CAZymes) class and extracellular plant cell wall degrading enzymes (PCWDEs). HC showed the highest number of enzymes in CAZymes and the lowest number in the extracellular PCWDEs. Six strains showed four subsets, and HC demonstrated three subsets, except hasDEF, in type I secretion system, while the type II secretion system of the seven strains was conserved. Components of human pathogens, such as Salmonella pathogenicity island 1 type type III secretion system (T3SS) and effectors, were identified in PZ1; T3SSa was not identified in HC. Two putative effectors, including hrpK, were identified in seven strains along with dspEF. We also identified 13 structural genes, six regulator genes, and five accessory genes in the type VI secretion system (T6SS) gene cluster of six Pectobacterium species, along with the loss of T6SS in PZ1. HC had two subsets, and JK2.1 had three subsets of T6SS. With the GxSxG motif, the phospholipase A gene did locate among tssID and duf4123 genes in the T6SSa cluster of all strains. Important domains were identified in the vgrG/paar islands, including duf4123, duf2235, vrr-nuc, and duf3396.

• Korean Journal of Ichthyology
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• v.21 no.sup1
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• pp.74-74
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• 2009

The perciform suborder Labroidei comprising six families (Cichlidae, Embiotocidae, Pomacentridae, Labridae, Odacidae, and Scaridae) are characterized by having the specialized pharyngeal jaws for food processing, i.e., united fifth ceratobranchials and upper pharyngeal jaw articulating with the basicranium via diarthroses (Stiassny and Jensen, 1987). They usually inhabit in the most tropical and subtropical seas and comprise about 235 genera and roughly 2,274 species worldwide (Nelson, 2006). Concerning the Korean labroid fishes, Mori (1952) had listed 18 genera and 26 species belong to four families in his check list of Korean fishes since Jordan and Metz (1913) firstly reported six genera and seven species in only two families (Embiotocidae and Labridae). Chyung (1977) added two species, Tilapia mossambica and Cirrhilabrus temmincki, to Mori’s list and also classified them into three suborders, i.e., Embiotocina (containing only Embiotocidae), Pomacentrina (Cichlidae and Pomacentridae), and Labrina (Labridae and Scaridae). Subsequently, Lee and Kim (1996) reviewed the Korean labroidfishes taxonomically resulting in 22 genera and 32 species in five families with some taxonomical modifications including a new Korean record. It is remarkable to be added many new Korean recordsto the pomacentrids or the labrids for recent 10 years (Koh et al., 1995; Yoo et al., 1995; Koh et al., 1997; Myoung, 1997; Choi and Kim, 2000; Choi et al., 2002; Kim and Go, 2003). Recently, Kim et al. (2005) briefly described all members of the Korean Labroidei with a color photograph or a figure, recognizing 27 genera and 42 species in five families. In the present study, the current taxonomical status of the Korean labroid fishes including distributional features is summarized based both on specimens collected from the Korean waters and on literature survey to provide bio-information of the Korean native fish species. As a result, the Korean labroid fishes totally consist of 27 genera and 44 species in five families, that is, Cichlidae (1 species), Embiotocidae (3), Pomacentridae (15), Labridae (22), and Scaridae (2). They distributed mainly in the coastal waters of the South Sea, Korea, however, most pomacentrids or labrids occur in the coastal waters of Jeju Island only, although some species were observed in their larval or juvenile stages only from coastal waters of the island. Interestingly, several species are expanding their distribution north to Ulreung and Dok islands in the East Sea, Korea lately.

• The Korea Journal of Herbology
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• v.39 no.2
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• pp.1-9
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• 2024

Objectives : Paeng-hwal is described as an insect herbal medicine used for digestive diseases in the Dong-ui-bo-gam. The origin of this herbal medicine is limited to several small crabs, such as Helice tridens. These crab species cohabitat in the same environment and share similar morphological characteristics, making it very difficult to distinguish and collect the individual species for use in dietary supplements or herbal medicines. This study was conducted to develop a genetic identification tool for discriminating among these closely related small crab species. Methods : CO1 DNA barcode regions of 15 samples from 6 species of small crabs were analyzed to obtain the individual sequences. To identify the correct species, comparative analyses were carried out using the database of the NCBI GenBank and the NIBR. SCAR primers were designed to develop simple and rapid assay methods using inter-species specific sequences. Optimal SCAR assay conditions were established through gradient PCR, and the limit of detection (LOD) was determined. Results : Six species of small crabs (Helicana tridens, Macrophthalmus abbreviatus, Helicana tientsinensis, Helicana wuana, Chiromantes dehaani, and Hemigrapsus penicillatus), which are distributed as Paeng-hwal, were identified through CO1 sequences analysis. We also developed SCAR markers to distinguish between six small crabs at the species level. Furthermore, we established the optimal PCR assay methods and the LOD of each individual species. Conclusions : The rapid and simple SCAR-PCR assay methods were developed to identify the species and control the quality of herbal medicines for Paeng-hwal based on the genetic analyses of CO1 DNA barcodes.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.5 no.2
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• pp.60-67
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• 2024

Hitchhiker insect species from international vessels entering Korea in 2022 were monitored. A total of 947 samples of hitchhiker insects were collected using a simple collection method by hand. Among them, 856 individuals were classified as 374 species of 86 families in 10 orders through integrative analysis with DNA barcoding and morphological examination. The rest 91 individuals were identified only to the family level. As a result of examining the distribution of the 374 species (856 individuals), 38 species (71 individuals) were confirmed as not-distributed species in Korea, including six species (11 individuals) as 'regulated species' listed by the Korean Animal and Plant Quarantine Agency. Of 38 not-distributed species, 10 species were detected multiple times (at least twice). Accordingly, it is necessary to strengthen monitoring of the area around the port of entry along with continuous surveillance to prevent invasion of species detected multiple times. For monitoring alien hitchhiker insect species, this study provided detection information and biological data for alien species.