• Animal cells and systems
• /
• v.13 no.3
• /
• pp.323-329
• /
• 2009

We analyzed partial sequences of cytochrome b (cyt-b), a mitochondrial DNA (mtDNA) gene, to determine the genetic relationships between six horsehead fish species: Branchiostegus japonicus, Branchiostegus albus, Branchiostegus auratus, Branchiostegus argentatus, Branchiostegus wardi, and an unidentified Branchiostegus species. The specimens were collected in Korea, China, Japan, and Vietnam. We compared their molecular phylogenetic relationships inferred from mtDNA cyt-b sequences with an osteological analysis. The unidentified species, B. sp., was similar to B. albus in terms of the lack of triangular silver-white dot at the posterior region of eyes (vs. large one present in B. japonicus), but was also similar to B. japonicus in terms of the presence of a straight-shaped first hemal spine (vs. a curve-shaped hemal spine in B. albus). Analysis of the mtDNA cyt-b sequences indicated that the smallest estimated sequence divergence was between the B. japonicus and B. sp. (0.70-0.94%), whereas the largest difference was between B. auratus and B. argentatus (23.06-23.36%). Both the maximum parsimony and maximum likelihood trees showed that the B. sp. was closely clustered with B. japonicus, and that B. auratus was most distant from the other species. When comparing the osteological characters, UPGMA tree showed that the B. japonicus and B. sp. were the most closely clustered species, and B. auratus was the most distantly clustered fish relative to the other species. The shape of the nasal, otolith and first hemal spine was informative for distinguishing B. auratus from the other species. These osteological differences were consistent with the differences in mtDNA.

• The Plant Pathology Journal
• /
• v.33 no.2
• /
• pp.148-162
• /
• 2017

As a step towards discovering novel pathogenesis-related proteins, we performed a genome scale computational identification and characterization of secreted and transmembrane (TM) proteins, which are mainly responsible for bacteria-host interactions and interactions with other bacteria, in the genomes of six representative Burkholderia species. The species comprised plant pathogens (B. glumae BGR1, B. gladioli BSR3), human pathogens (B. pseudomallei K96243, B. cepacia LO6), and plant-growth promoting endophytes (Burkholderia sp. KJ006, B. phytofirmans PsJN). The proportions of putative classically secreted proteins (CSPs) and TM proteins among the species were relatively high, up to approximately 20%. Lower proportions of putative type 3 non-classically secreted proteins (T3NCSPs) (~10%) and unclassified non-classically secreted proteins (NCSPs) (~5%) were observed. The numbers of TM proteins among the three clusters (plant pathogens, human pathogens, and endophytes) were different, while the distribution of these proteins according to the number of TM domains was conserved in which TM proteins possessing 1, 2, 4, or 12 TM domains were the dominant groups in all species. In addition, we observed conservation in the protein size distribution of the secreted protein groups among the species. There were species-specific differences in the functional characteristics of these proteins in the various groups of CSPs, T3NCSPs, and unclassified NCSPs. Furthermore, we assigned the complete sets of the conserved and unique NCSP candidates of the collected Burkholderia species using sequence similarity searching. This study could provide new insights into the relationship among plant-pathogenic, humanpathogenic, and endophytic bacteria.

• Korean Journal of Medicinal Crop Science
• /
• v.27 no.1
• /
• pp.17-23
• /
• 2019

Background: Cnidium officinale Makino and Ligusticum chuanxiong Hort. are important medicinal crops in Korea. However, there is insufficient information on the identification of thrips, which attack these plants. Until now, one species of thrips has been recorded as a main pest. Methods and Results: To identify the thrips emerging in C. officinale Makino and L. chuanxiong Hort., these plants were independently cultivated in two local areas. Thirty individuals of each plant species were selected randomly and surveyed for the presence of thrips. After confirming the existence of thrips, 100 thrips individuals were collected from each crop using the beating method. To identify thrips species, we performed PCR-restriction fragment length polymorphism (RFLP)-based analysis using ITS2 primer sets. Six thrips species were identified: western flower thrips (Frankliniella occidentalis), flower thrips (F. intonsa), onion thrips (Thrips tabaci), chrysanthemum thrips (T. nigropilosus), chilli thrips (Scirtothrips dorsalis), and grass thrips (Anaphothrips obscurus). The proportion of these species differed between the host plant species. Conclusions: Six thrips species were major pests of two medicinal crops. Integrated pest management is required to control these thrips species, and will enhance the yield and quality of C. officinale and L. chuanxiong.

• Asian-Australasian Journal of Animal Sciences
• /
• v.4 no.3
• /
• pp.245-250
• /
• 1991

Analysis of the characteristics and the grouping of the species of sown and weeds in artificial pastures was studied applying the principal component analysis method. Presency and coverage of six sown species and fifteen weed species which occurred in pastures of under-grazing and optimumgrazing were subject to analysis. From field survey, species were divided into three groups: the group A included five species such as Festuca arundinacea, Lolium perenne and Dactylis glomerata, etc., the group B included eleven species such as Polygonum longisetum, Agrostis alba and Rumex obtusifolius, etc., and the group C included five species such as Miscanthus sinensis, Rubus palmatus and Artemisia princeps, etc. The group A species corresponded to good pasture conditions and management. On the contrary, the group C species occurred in poor pasture conditions with inadequate management. The group B species corresponded to intermediate pasture conditions and management. Interrelated pair species co-existing and species non-co-existing were discovered. Factor loading as negative for the group A species. positive for the group C species and positive but lower than the group C species for the group B species. From these results it is concluded that the principal component analysis seems to one of the useful tools for the analysis of characteristics of species and the diagnosis of sown pasture vegetation, although further studies are required to get more general information about species characteristics.

• The Korean Journal of Mycology
• /
• v.21 no.4
• /
• pp.293-300
• /
• 1993

For the enzymes AAT, GmDH, ME, GPI, LDH and IDH, nine, seven, four, nine, seven, and four different phenotypes, respectively, were observed. All six isolates of an unidentified sterile Pythium sp. isolated from field soil showed the same band positions for all six enzymes compared. These phenotypes were not similar to any of the known Pythium species. Two isolates of unknown Pythium species (145 and 299) showed the same band positions for all six enzymes. The phenotypes for all three unknown Pythium spp. were different from the other species in the experiment. Five isolates of P. heterothallicum showed the same band positions for all enzymes compared except one enzyme, lDH. Two isolates of P. torulosum showed the same band petitions for enzymes AAT, GmDH and ME, and three isolates of P. totulosum showed the same positions for enzymes GPI, LDH, and IDH. Single isolates of P. spinosum and P. irregulare showed the same band positions for enzymes AAT, GmDH and GPI. In conclusion, sterile types of Pythium species showed 100% similarities among themselves but did not show any similarity with all isolates of P. heterothallicum and P. spinosum isolate, and showed very low similarities with other isolates in general except with unknown Pythium isolate 306. Similarity levels between different species were low in general with few exceptions.

• Mycobiology
• /
• v.31 no.2
• /
• pp.61-67
• /
• 2003

The mycobiota of the sandy soil of Egyptian beaches was investigated in thirty six sand samples collected from nine different localities in Egypt. The filamentous fungi were identified and assigned to thirty one genera and fifty one species. Greater populations as well as a wider spectrum range of fungal genera and species were obtained in sandy soil of Alexandria beach while Balteem beach was the poorest one. The total count of the genus or species was not depended upon cases of isolation. Most of the genera detected belonged to the Deuteromycotina with fewer proportions belonging to the Ascomycotina and Zygomycotina. The genera of highest incidence and their respective numbers of species were: Penicillium(35.72%, 6 species) and Aspergillus(30.28%, 16 species). The species which showed the highest incidence in all cases was P chrysogenum, followed by P citrinum, A. flavus, Chaetomium murorum and Trichoderma viride. A few number of other genera and species were also detected.

• Journal of Species Research
• /
• v.5 no.3
• /
• pp.551-565
• /
• 2016

This study aims to clarify the diversity of bryozoans which were collected from Seogwipo waters in Jeju Island, Korea. A total of 78 species has been reported from Seogwipo waters so far. In the present study, 63 species were found from nine sites of Seogwipo waters from 2008 to 2012, including six newly added species to the Korean bryozoan fauna and twelve species new to Seogwipo waters. As a result of this study, the bryozoans from Seogwipo waters were turned out to be 96 species, 64 genera, 42 families, three orders and two classes.

• The Korean Journal of Ecology
• /
• v.23 no.4
• /
• pp.331-337
• /
• 2000

Fourteen different taxa of dictyostelid cellular slime molds were recovered from the alpine and subalpine zone in Mt. Paektu. In subalpine zone, six species were recovered : Dictyostelium minutum, D. brefeldianum, D. crassicaule, D. capitatum, Polysphondylium solitarium and P. pallidum. One of these species which were isolated from the soils of Larix olgensis community exhibited several distinctive features which differed from the published species. This species was designated as a new species, Polysphondylium solitarium Kang et Chang, sp. nov. When cultivated at 22~24$^{\circ}C$ on low-nutrient agar media with Escherichia coli, Polysphondylium solitarium is distinguishable from other species by the following combination of features: (ⅰ) the sorocarps with vinaceous pigmentation; (ⅱ) pseudoplasmodia radial. usually centralized and rarely subdivided; (ⅲ) the various number of whorls; (ⅳ) the spores with unconsolidated and nonconspicuous polar granules. Also, we confirmed this new species by analyzing ribosomal DNA (ITS1, ITS2 and 5.8s DNA) sequences of P. solitarium and P. violaceum.

• Journal of Ginseng Research
• /
• v.19 no.3
• /
• pp.254-259
• /
• 1995

The content and composition of saponin compounds of Panax species were analyzed according to their species, region and processing type of red and white ginseng. The species employed were Korean-, Chinese-, Japanese red ginsengs, and Korean white ginseng of Panax ginseng, American- and Canadian ginsengs of Panax quinquefolium, and Panax notoinseng. Twelve main saponin components in the ginseng were identified and quantified using TLC and HPLC. All three species had remarkably different content and composition. However, within each species they were similar. Twelve major ginsenosides were determined in P. ginseng, eight in p. quinquefolium, and six in P. notoginseng. Of the components of P ginseng Rf, $Rh_1$, $Rh_2$ and Ra were not detected in P quinquefolium, and $Rb_2$, Rc, Rf, $Rh_2$, Ra and Ro not detected in P. notoinseam. Crude saponin content and protopanaxadiol/protopanaxatriol saponin ratio were compared. They were 4.81~5.24% and 1.27~ 1.45 in p. ginsengs, 7.01~7.25% and 2.12~ 2.15 in p. quinquefolium, 9.80% and 0.99 in P. notoineng. The prosapogenin and sapogenin content were different among the Panax species.

• Journal of Species Research
• /
• v.8 no.4
• /
• pp.380-388
• /
• 2019

We collected ciliate species from diverse habitats (brackish water, marine water, and terrestrial ecosystems) composed of estuarine, coast, and moss samples during 2017-2018 in Korea. The morphology and infraciliature of these species were examined and identified based on the observations of living cells and protargol impregnated specimens. Of the ciliates we identified, we described eight unrecorded species in Korea as followings: class Heterotrichea - Condylostoma vorax, Peritromus kahli; class Protocruziea - Protocruzia labiata; class Spirotrichea - Hemiamphisiella granulifera; class Litostomatea - Loxophyllum chinense; class Phyllopharyngea - Trochilioides recta; and class Oligohymenophorea -Cohnilembus verminus, Uronemella filificum. Among them, Protocruzia labiata is a poorly known species. In this paper, we provide the improved diagnoses and brief descriptions of the species with their microphotographs. The taxonomic classifications of the eight species are summarized as six classes, eight orders, five families, and eight genera. These voucher slides with protargol impregnated specimens have been deposited in the National Institutes.