• Title/Summary/Keyword: Single species

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Report of 22 unrecorded bacterial species in Korea belonging to phylum Bacteroidetes, discovered during surveys in 2018

  • Kim, Min Ji;Kim, Yeong Seok;Cha, Chang-Jun;Im, Wan-Taek;Jeon, Che Ok;Joh, Kiseong;Seong, Chi Nam;Yi, Hana;Kim, Seung Bum
    • Journal of Species Research
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    • v.9 no.1
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    • pp.26-34
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    • 2020
  • The phylum Bacteroidetes covers phenotypically diverse groups of Gram negative rods that do not form endospores, and currently includes 6 classes, 6 orders, 33 families and 380 genera. Members of Bacteroidetes can be aerobic and anaerobic heterotrophs, hydrogen utilizing chemolithotrophs, or methylotrophs. They can be isolated from diverse habitats including terrestrial and aquatic environments, environments with extreme physicochemical conditions, and animal and plant hosts. During a series of extensive surveys of prokaryotic species diversity in Korea, bacterial strains belonging to Bacteroidetes were isolated from various sources of aquatic and terrestrial environments. A total of 22 isolates were obtained, which represent 22 unrecorded species in Korea belonging to 14 genera of 6 families. Sixteen species among them were assigned to Flavobacteriaceae, two species were to Sphingobacteriaceae, and single species was to each of the families Bacteroidaceae, Balneolaceae, Chitinophagaceae and Cytophagaceae. At genus level, Chryseobacterium (5 species) and Flavobacterium (5 species) were the most abundant genera, and single species were obtained for the genera Bacteroides, Baloneola, Terrimonas, Dyadobacter, Aquimarina, Arenibacter, Gillisia, Gilvibacter, Salinimicrobium, Winogradskyella, Pedobacter and Sphingobacterium. The detailed descriptions of each unrecorded species are provided.

Acanthocyclops fonticulus (Cyclopoida, Cyclopidae), a New Species of Cyclopoid Copepods from Mountain Springs in Korea

  • Lee, Ji-Min;Chang, Cheon-Young
    • Animal cells and systems
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    • v.11 no.1
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    • pp.61-68
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    • 2007
  • A new cyclopoid species belonging to the genus Acanthocyclops is described from several mountain springs in South Korea. This species is allied to A. kieferi species group in sharing 11-segmented antennules, but is, clearly distinguished from them by its single apical spine on the third endopodal segment of leg 4 and an extra spine on the distal segment of leg 5 in both sexes.

Comparative Electrophoretic Studies of Isoperoxidase for 23 Species in the Genus Pinus (소나무속(屬) 23수종(樹種)에 있어서 Peroxidase 동위효소(同位酵素)의 변이(変異))

  • Park, Young Goo
    • Journal of Korean Society of Forest Science
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    • v.51 no.1
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    • pp.36-40
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    • 1981
  • The patterns of isoperoxidase in needle-leaves of 23 species of the genus Pinus were analyzed by means of starch gel electrophoresis. Each species had a unique band pattern. In all, 56 isoperoxidase bands were identified, of which 9 to 35 isoperoxidase bands were possessed by single species. No single band was common to all Pinus species but when band patterns were grouped into 7 types, type II was considered to be the specific to genus Pinus. The results of this experiment indicated that various Pinus species had their more or less specific band patterns of peroxidase.

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Comparative Analysis of the Complete Genomes of Three Ficus L. (Moraceae) Species and Its Implication

  • Kim, Tae-Hee;Jung, Joonhyung;Kim, Joo-Hwan
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2019.10a
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    • pp.41-41
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    • 2019
  • The genus Ficus L., containing approximately 850 species, is by far the largest genus in the Moraceae. They are mainly distributed worldwide, mainly in tropical countries. In South Korea, there are three native Ficus (including F. erecta Thunb, F. sarmentosa var. nipponica (Franch. & Sav.) Corner, and F. thunbergii Maxim.). Among them, F. erecta is effectively natural resources for the improvement of senile cognitive impairment. However, the chloroplast (cp) genome sequences and information of F. erecta have not been addressed. Therefore, in this study, we provide the complete cp genome of F. erecta and its allied species using next-generation sequencing technology. The chloroplast of Ficus species has typical structure which includes large and small single copy regions and a pair of inverted repeats (IRs). The sizes of cp genomes range from 160,276 bp to 160,603 bp. To determine the phylogenetic positions of these species, we conducted a maximum likelihood analysis using common protein-coding genes in chloroplast sequences. Also, we describe a newly developed single nucleotide polymorphism (SNP) markers using multiplex PCR to identify F. erecta based on amplification-refractory mutation system (ARMS) technique. We analyzed matK, atpB of the chloroplast genes and ITS from F. erecta and three related taxa, F. carica, F. sarmentosa var. nipponica and F. thunbergii. It provides useful information for molecular identification between F. erecta and related Korean native species.

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Comparative Chloroplast Analysis and Phylogenetic Relationships Among Corylopsis Siebold & Zucc. (Hamamelidaceae)

  • Tae-Hee Kim;Sang-Chul Kim;Young-Ho Ha;Hiroaki Setoguchi;Hyuk-Jin Kim
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2022.09a
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    • pp.55-55
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    • 2022
  • Corylopsis Siebold & Zucc. (Hamamelidaceae) is widely used for horticultural plant and comprise ca. 25 species in East Asia (1 species in Korea; 4 species in Japan; 20 species in China). Previous revisions have gone from 7 to more than 30 species, causing confusion in the nursery industry and public gardens. Due to morphological similarity within Corylopsis, molecular research is needed to distinguish it. In this study, the chloroplast genome of C. gotoana and C. pauciflora distributed in Japan was completed by using NGS (Next-Generation Sequencing) technique. The genome size of C. gotoana and C. pauciflora were 159,434 bp (large single-copy (LSC): 88,164 bp; small single-copy (SSC): 18,702 bp; inverted repeat regions (IRs): 26,284 bp) and 159,363 bp (LSC: 88,097 bp; SSC: 18,700 bp; IRs: 26,283 bp), respectively. In addition, we investigated the repeats, SNPs, and indels, and that could be used as DNA markers. Phylogenetic analysis demonstrated that C. pauciflora was sister to C. gotoana and C. spicata. The genus Corylopsis is a monophyletic group and Loropetalum is closely related to Corylopsis. The results of our study will provide the basic data necessary for the analysis of the species identification markers and genetic diversity within the genus Corylopsis in the future.

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Pollen Morphology of Genus Sedum in Korea

  • Kim, Jeong-Hee
    • Journal of Plant Biology
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    • v.37 no.2
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    • pp.245-252
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    • 1994
  • Pollens of 20 species of Sedum were investigated with a scanning electron microscope. The pollen morphology of Sedum was rather variable, within particular species or even within a single inflorescence. Differences occurred in the number and shape of apertures and surface sculpture. Besides 3-colporate, various aperture types including 2-syncolporate, 3-syncolporate, 40stephanocolporate, 5-stephanocolporate, zonate, and irregular types were found in a single specimen. Also, striate-rugulose and psilate sculpture were found in S. viviparum. No correlation was found between the pollen morphology and the floral formula. Pollen characters appeared to be not useful for infrageneric classification of Korean Sedum.

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BIFURCATION ANALYSIS OF A SINGLE SPECIES REACTION-DIFFUSION MODEL WITH NONLOCAL DELAY

  • Zhou, Jun
    • Journal of the Korean Mathematical Society
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    • v.57 no.1
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    • pp.249-281
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    • 2020
  • A reaction-diffusion model with spatiotemporal delay modeling the dynamical behavior of a single species is investigated. The parameter regions for the local stability, global stability and instability of the unique positive constant steady state solution are derived. The conditions of the occurrence of Turing (diffusion-driven) instability are obtained. The existence of time-periodic solutions, the existence and nonexistence of nonconstant positive steady state solutions are proved by bifurcation method and energy method. Numerical simulations are presented to verify and illustrate the theoretical results.

DYNAMICAL MODEL OF A SINGLE-SPECIES SYSTEM IN A POLLUTED ENVIRONMENT

  • Samanta, G.P.;Maiti, Alakes
    • Journal of applied mathematics & informatics
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    • v.16 no.1_2
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    • pp.231-242
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    • 2004
  • The effect of toxicants on ecological systems is an important issue from mathematical and experimental points of view. Here we have studied dynamical model of a single-species population-toxicant system. Two cases are studied: constant exogeneous input of toxicant and rapidly fluctuating random exogeneous input of toxicant into the environment. The dynamical behaviour of the system is analyzed by using deterministic linearized technique, Lyapunov method and stochastic linearization on the assumption that exogeneous input of toxicant into the environment behaves like ‘Coloured noise’.

Point Particle Approximation for Single and Two Species Diffusion-Influenced Reactions

  • Kim, Hyojoon
    • Bulletin of the Korean Chemical Society
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    • v.34 no.5
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    • pp.1454-1456
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    • 2013
  • The fluctuations in concentrations of reactants dominate the long-time dynamics of the single (A + A ${\rightarrow}$ 0) and two species (A + B ${\rightarrow}$ 0) diffusion-influenced annihilation reactions. Although hierarchical Smoluchowski approaches can provide a systematic and flexible framework to deal with the fluctuation effects, their results are too complicated to be analytically solved. For the efficient numerical calculation of the complicated fluctuation effect terms, we show that the presented point particle approximation is not only practical but also quite accurate for most conditions in diffusion-influenced reaction systems.

An Ecological Corridor Plan in an Urban Neighborhood Park - A Case Study of Noryangjin Neighborhood Park in Dongjak-gu, Seoul - (도심지역 산지형 근린공원내 도로에 의한 단절지역 생물이동통로 조성계획 연구 - 동작구 노량진근린공원을 대상으로 -)

  • Han Bong-Ho;Kim Jeong-Ho;Kim Jong-Sik
    • Journal of the Korean Institute of Landscape Architecture
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    • v.33 no.2 s.109
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    • pp.16-31
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    • 2005
  • This study was carried out to design a bridge-type ecological corridor plan in a forested neighborhood park affected by road construction in Dongjak-gu, Seoul. In order to study the site conditions, we analyzed topography, ecosystem structure, and user behavior and trail use. Existing vegetation was classified into 12 types. Based on a vegetation analysis, the Populus albaglandulosa and Robinia pseudoacacia communities, where planted species are dominant, were distributed extensively in the southern forest area. Planted areas with a single-layer structure of Korean landscape woody plants and Robinia pseudoacacia communities with a single-layer structure were distributed extensively in the northern forest and water-supply area. Based on a study of 28 quadrats, the similarity index between the multi-layer plant communities distributed in the southern forest and the single-layer planted areas was low. Twenty-four species of wild birds(355 individuals) were found in the survey area, including nine interior species and three urban species. The study of user behavior and numbers showed most users were walkers and few users were observed in the southern forest while most users were observed in the northern forest and water supply area. We selected some wild birds as model species to represent migrating species believed to use this park as an ecological corridor during migration. We suggested the new park plan include the following: improvement of vegetation structure for wildbird migration and habitat, connection of park trails for users and presentation of a landscape linked to nature.