• Title/Summary/Keyword: Shannon index

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Shannon's Information Theory and Document Indexing (Shannon의 정보이론과 문헌정보)

  • Chung Young Mee
    • Journal of the Korean Society for Library and Information Science
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    • v.6
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    • pp.87-103
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    • 1979
  • Information storage and retrieval is a part of general communication process. In the Shannon's information theory, information contained in a message is a measure of -uncertainty about information source and the amount of information is measured by entropy. Indexing is a process of reducing entropy of information source since document collection is divided into many smaller groups according to the subjects documents deal with. Significant concepts contained in every document are mapped into the set of all sets of index terms. Thus index itself is formed by paired sets of index terms and documents. Without indexing the entropy of document collection consisting of N documents is $log_2\;N$, whereas the average entropy of smaller groups $(W_1,\;W_2,...W_m)$ is as small $(as\;(\sum\limits^m_{i=1}\;H(W_i))/m$. Retrieval efficiency is a measure of information system's performance, which is largely affected by goodness of index. If all and only documents evaluated relevant to user's query can be retrieved, the information system is said $100\%$ efficient. Document file W may be potentially classified into two sets of relevant documents and non-relevant documents to a specific query. After retrieval, the document file W' is reclassified into four sets of relevant-retrieved, relevant-not retrieved, non-relevant-retrieved and non-relevant-not retrieved. It is shown in the paper that the difference in two entropies of document file Wand document file W' is a proper measure of retrieval efficiency.

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Characterization of Weed Occurrence in Protected Culture(P.E. house, P.E. tunnel, P.E. mulching) (시설재배지(施設栽培地)(P.E. 하우스, P.E. 턴넬, P.E. 멀칭)에서의 잡초발생특성(雜草發生特性))

  • Woo, I.S.;Pyon, J.Y.
    • Korean Journal of Weed Science
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    • v.8 no.3
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    • pp.317-323
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    • 1988
  • This survey was conducted to know characterization of weed occurrence under protected culture conditions at Yousong in 1985. Chenopodium album, Polygonum hydropiper, Portulaca oleracea and Digitaria sanguinalis were dominated in outdoor, whereas Capsella bursa-pastoris, C. album, D. sanguinalis and P. oleracea were dominant in polyethylene house. More weeds emerged in mulching plots and dry weight of weeds was greater in non-mulching plots. Summer broadleaf weeds and summer grasses were abundant in outdoor, whereas non-mulching plots in polyethylene house was dominated by winter broadleaf weeds, and mulching plots in polyethylene house were dominated by winter grasses and winter broadleaf weeds in early stage and summer grasses and summer broadleaf weeds in late stage. Simpson index was high in polyethylene house and Shannon's diversity index, maximum diversity for the Shannon diversity index were lower than eveness using the Shannon diversity index and this trend was more remarkable in mulching and mulching in tunnel than in non-mulching under polyethylene house condition. Shannon diversity index, maximum diversity for the Shannon diversity index were high in mulching or tunnel, and Simpson index was high in non-mulching in outdoor condition. Interspecific competition was more severe than intraspecific competition in both conditions.

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Ecological Attributes of Species Composition by Topographical Positions in the Natural Deciduous Forest

  • Kim, Ji-Hong;Lee, Hye-Seon;Hwang, Gwang-Mo
    • Journal of Forest and Environmental Science
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    • v.27 no.1
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    • pp.17-22
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    • 2011
  • Based upon the vegetation data of woody plants by plot sampling method in the natural deciduous forest of Mt. Jeombong, the study was carried out to examine importance value, rank abundance curve, and species abundance curve, and comparatively evaluate seven different species diversity indices for Shannon-Wiener index, Simpson index, McIntosh index, Log series, Margalef index, Berger-Parker index, and species richness, according to topographic positions. The minimal area which meant only few more species were increased was 3.48 ha in total. The dominant species of valley were Carpinus cordata, Acer pseudo-sieboldianum, Quercus mongolica, Acer mono, and Abies holophylla, and the dominant species of mid-slope were Quercus mongolica, Acer pseudo-sieboldianum, Carpinus cordata, Tilia amurensis, and Fraxinus rhynchophylla. Moreover, the dominant species of ridge were Quercus mongolica, Acer pseudo-sieboldianum, Tilia amurensis, Fraxinus rhynchophylla, and Acer mono. According to rank abundance curve and species abundance curve, species evenness was also low. All of Log series, species richness, Margalef, and Shannon-Wiener index discriminated that valley had the highest diversity, and ridge had the lowest diversity; but, Simpson index, McIntosh index, and Berger-Parker index represented that mid-slope had the highest diversity, and ridge had the lowest diversity. Uniquely, in Berger-Parker index, mid-slope was the higher value than total.

Comparison of Plant Diversity of Natural Forest and Plantations of Rema-Kalenga Wildlife Sanctuary of Bangladesh

  • Sobuj, Norul-Alam;Rahman, Mizanur
    • Journal of Forest and Environmental Science
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    • v.27 no.3
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    • pp.127-134
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    • 2011
  • The purpose of the study was to assess and compare the diversity of plant species (trees, shrubs, herbs) of natural forest and plantations. A total of 52 plant species were recorded in the natural forest, of which 16 were trees, 15 were shrubs and 21 were herbs. On the contrary, 31 species of plants including 11 trees, 8 shrubs and 12 herbs were identified in plantation forest. Shannon-Wiener diversity index were 2.70, 2.72 and 3.12 for trees, shrubs and herbs respectively in the natural forest. However, it was 2.35 for tree species, 2.31 for shrub species and 2.81 for herb species in the plantation forest. Jaccard's similarity index showed that 71% species of trees, 44% species of shrubs and 43% species of herbs were same in plantations and natural forest.

Species Diversity Analysis of Ecosystem Survey Data Using Total Information (정보계측기법을 이용한 생태조사자료의 종다양도 분석)

  • Jung, Nam-Su;Lee, Jeong-Jae;Park, Seung-Kie;Kim, Woong
    • Journal of Korean Society of Rural Planning
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    • v.13 no.2
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    • pp.1-5
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    • 2007
  • Shannon and Simpson indexes are used for species diversity analysis of ecosystem. In species diversity analysis of ecosystem, not only frequency of each species but also survey size have to be considered. In this study, total information composed with knowledge and ignorance was suggested as a species diversity analysis method for ecosystem survey. To apply developed method, flora in the Sangachun river valley was sampled with 19 sites and 198 species. In applying results, Shannon index shows more reasonable results than Simpson index by the variance of sample size but has difficulties of determining the relation of surveying species number and sample site number. Suggested total information can overcome this difficulty by the relation of knowledge and ignorance.

Evaluation of Biodiversity Based on Changes of Spatial Scale -A Case Study of Baekdudaegan Area in Kangwondo- (공간스케일 변화에 따른 생물다양성 평가 -강원도 백두대간 보호구역을 대상으로-)

  • Sim, Woodam;Park, Jinwoo;Lee, Jungsoo
    • Journal of Forest and Environmental Science
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    • v.30 no.1
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    • pp.91-100
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    • 2014
  • This research was conducted on the conservation area of Baekdudaegan, Kangwondo under the purpose of evaluating bio-diversity according to the changes of spatial scale, using GIS data and spatial filtering method. The diversity index was calculated based on the information of species of The $5^{th}$ forest type map using Shannon-weaver index (H'), evenness index ($E_i$) and richness index ($R_i$). The diversity index was analyzed and compared according to the changes of 12 spatial scales from Kernel size $3{\times}3$ to $73{\times}73$ and basin unit. As for H' and $R_i$, spatial scale increased as diversity index decreased, while $E_i$ decreases gradually. H' and $R_i$ was highest; each 1.1 and 0.6, when the Kernel size was $73{\times}73$, while $E_i$ was 0.2, the lowest. When you look at according to the basin unit, for large basin unit, 'YeongDong' region shows higher diversity index than 'YeongSeo' region. For middle basin unit, 'Gangneung Namdaecheon' region, and for small basin unit, 'Gangneung Namdaecheon' and 'Gangneung Ohbongdaem' region shows high diversity index. When you look at the relationship between diversity index and Geographic factors, H' shows positive relation to curvature and sunshine factor while shows negative to elevation, slope, hillshade, and wetness index. Also $E_i$ was similar to the relationship between H' and Geographic factor. Meanwhile, $R_i$ shows positive relationship to curvature and sunshine factor, while negative to elevation, slope, hillshade, and wetness index. macro unit diversity index evaluation was possible through the GIS data and spatial filtering, and it can be a good source for local biosphere conservation policy making.

Shannon의 함수

  • Yi, Beom-Jun
    • 한국해양학회지
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    • v.14 no.1
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    • pp.32-38
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    • 1979
  • The original concept and theory of Shannon's function H=-$\Sigma$(i-1,n)Pi, log$\_$2/Pi and its applicable domains in ecology are discussed. The confusions exist in use and interpretation of this function are due to: 1. Mixing the idea of proper ecological diversity with that of Shannon's information theory. 2. Confusion of physical or thermodynamical systems with ecological systems. 3. Confusion of the system from which one had calculated function H with the system of which function H is interpreted. It's proposed to use function H for the comparison of community's structure and so, for the distinction of community's evolution (succession) steps.

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Genetic Diversity and Spatial Genetic Structure of Berchemia racemosa var. magna in Anmyeon Island (안면도 먹넌출 집단의 유전다양성과 공간적 유전구조)

  • Song, Jeong-Ho;Lim, Hyo-In;Jang, Kyeong-Hwan;Hong, Kyung-Nak;Han, Jingyu
    • Horticultural Science & Technology
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    • v.32 no.1
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    • pp.84-90
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    • 2014
  • Berchemia racemosa var. magna is only found in Anmyeon Island of South Korea. Genetic diversity and the spatial genetic structure of B. racemosa var. magna in Anmyeon Island were studied by I-SSR marker system. Fifty I-SSR amplicons were produced from 8 selected primers. We used 13 polymorphic markers to analyze the genetic structure. Distribution of 39 individuals in the study plot($90m{\times}70m$) showed aggregate pattern (aggregation index = 0.706). Total 21 genets were observed from 39 individuals through I-SSR genotyping. Proportion of distinguishable genotype (G/N), genotype diversity (D) and genotype evenness (E) were 53.8%, 0.966 and 0.946, respectively. In spite of the small number and the narrow distribution, Shannon's diversity index (I = 0.598) was relatively high as compared with those of the other plant species. For ex situ genetic conservation of B. racemosa var. magna, the sampling strategy based on spatial autocorrelation using Tanimoto distance is efficient at choosing the conserved individuals with a 6 meter interval between individual trees.

Survey on Plant-Parasitic Nematodes in Peach Orchards in Gyeongbuk Province (경북지역 복숭아과원에 분포하는 식물기생성 선충의 조사)

  • 권태영;김동근;최충돈;윤재탁
    • Korean journal of applied entomology
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    • v.43 no.1
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    • pp.81-84
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    • 2004
  • Plant-parasitic nematodes were surveyed at peach orchards in Gyeongbuk province for three years from 2000 to 2002. Species, density, frequency, Simpson's index, Shannon and Wiener index, and prominence value were analyzed. Plant-parasitic nematodes were isolated from 97 orchards out of 124 orchards. More important plant-parasitic nematode genera on peach were Tylenchorhynchus nudus, Criconemoides informis, Paratylenchus elachistus, Pratylenchus vulnus, and Helicotylenchus digonichus. Aphelenchus sp., Tylenchus sp., Heterodera sp., Scutellonema sp. were found, but were not important. Root-knot nematodes were not found even though they were serious in foreign countried.

Relationship between Tree Species Diversity and Carbon Stock Density in Moist Deciduous Forest of Western Himalayas, India

  • Shahid, Mohommad;Joshi, Shambhu Prasad
    • Journal of Forest and Environmental Science
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    • v.33 no.1
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    • pp.39-48
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    • 2017
  • With the growing global concern about climate change, relationship between carbon stock density and tree species has become important for international climate change mitigation programmes. In this study, 150 Quadrats were laid down to assess the diversity, biomass and carbon stocks in each of the forest ranges (Barkot Range, Lachchiwala Range and Thano Range) of Dehra Dun Forest Division in Doon Valley, Western Himalaya, India. Community level carbon stock density was analyzed using Two Way Indicator Species Analysis. Species Richness and Shannon Weiner index was correlated with the carbon stocks of Doon Valley. Positive and weak relationship was found between the carbon stock density and Shannon Weiner Index, and between carbon stock density and Species Richness.