• 제목/요약/키워드: Shannon's diversity index

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ISSR 마커를 이용한 서식 면적에 따른 퉁퉁마디의 유전적 다양성 (Genetic Diversity of Salicornia herbacea according to Habitat Area by ISSR Markers)

  • 김석규;조윤식;허영백;송재희;정희도;정상옥
    • 한국환경생태학회지
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    • 제31권6호
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    • pp.492-499
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    • 2017
  • 퉁퉁마디 개체군의 서식 면적에 따른 유전적 다양성을 조사하기 위하여 6개 군집 96개체를 대상으로 ISSR marker를 사용하여 분석하였다. 6개 ISSR 프라이머에서 총 49개의 PCR 증폭 밴드가 관찰되었으며 이 중 30개의 밴드가 유전적 다형성을 갖는 밴드로 나타났다. 퉁퉁마디 개체군 전체의 유전적 다양성을 나타내는 지수 I(Shannon's information index)는 0.382로 나타났으며 h(gene diversity)는 0.249으로 나타났다. 군집 크기에 따른 유전적 다양성 지수는 $0.1m{\times}0.1m$에서 0.092(I), 0.058(h)로 가장 낮게 나타났고 $25m{\times}25m$에서 0.338(I), 0.227(h)로 가장 높게 나타나 유전적 다양성이 높은 군집 형성에 적합한 면적이라 할 수 있다. 퉁퉁마디 개체군 간 거리에 따른 유전적 다양성의 상관관계를 UPGMA 방법으로 분석한 결과 퉁퉁마디 개체군 간 거리와는 유의한 상관관계를 보이지 않았다. 본 연구 결과 제한된 환경에서 서식하는 퉁퉁마디는 유전적 다양성을 갖는 군집 형성을 위해 일정한 크기 이상의 면적이 확보되어야 할 것으로 판단된다.

Status, Distribution, Conservation and Use Value of Medicinal and Aromatic Plants (MAPs) in Sagarmatha National Park, Nepal

  • Gaire, Damodar
    • Journal of Forest and Environmental Science
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    • 제30권3호
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    • pp.253-258
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    • 2014
  • The study attempts to assess the status, distribution, conservation and use value of Medicinal and Aromatic Plant (MAPs) in the Sagarmatha National Park. Altogether 62 species of MAPs belonging to 47 genera and 33 families have been recorded in the study area. 10 species, belonging to 9 families are categorized as the potential species. Out of the these species, most potential in local but threatened species are Allium hypsistum Stearn, Cordyceps sinensis Sacc, Dactylorhiza hatagirea Soo, Nardostachys grandiflora DC, Aconitum orochryseum, Ephedra gerardiana Wall. Ex. Stapf, Swertia multicaulis D. Don, Picrorhiza scrophulariflora Penne, Rheum australe. D. Don, Malva verticillataL and Swertia pedicallata Benerji. By analysis of data using Simpson's diversity index (SI) and Shannon weaver function (H'), there was high diversity (more heterogeneous) MAPs species composition in the Manjo Gate to Large Dobhan. (0.98349). Less diversity (less heterogeneous) MAPs species composition was in Tyanboche to Pangoche (0.90419). Similarly, the Shannon weaver function shows that in plots laying out in Mongla to Phorche are evenly distributed than others However, higher MAPs species (i.e., 31) was found in the way of Manjo Gate to Larja Dobhan than others.

MEASURE OF DEPARTURE FROM QUASI-SYMMETRY AND BRADLEY-TERRY MODELS FOR SQUARE CONTINGENCY TABLES WITH NOMINAL CATEGORIES

  • Kouji Tahata;Nobuko Miyamoto;Sadao Tomizawa
    • Journal of the Korean Statistical Society
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    • 제33권1호
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    • pp.129-147
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    • 2004
  • For square contingency tables with nominal categories, this paper proposes a measure to represent the degree of departure from the quasi-symmetry (QS) model and the Bradley-Terry (BT) model. The measure proposed is expressed by using the Cressie and Read (1984)'s power-divergence or Patil and Taillie (1982)'s diversity index. The measure lies between 0 and 1, and it is useful for comparing the degree of departure from QS or BT in several tables.

Effects of reforestation approaches, agroforestry and woodlot, on plant community composition, diversity and soil properties in Madhupur Sal forest, Bangladesh

  • Hasan, Mohammad Kamrul;Islam, Md. Tariqul;Akter, Rojina;Roshni, Nasima Akther
    • Journal of Ecology and Environment
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    • 제46권3호
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    • pp.204-217
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    • 2022
  • Background: Increasing land demands for food production have led to biodiversity loss and land degradation in the Madhupur Sal forest. Reforestation activities such as agroforestry and woodlot plantation support the conservation of diversity, restoration of forest and prevention of soil erosion in degraded natural Sal forest. Knowing about these reforestation activities, this study is needed to compare the species composition, richness, and soil nutrients of these two plantation activities to the natural Sal forest in the degraded Madhupur Sal forest in Bangladesh. Results: The analysis showed that in between the reforestation activities, the highest Shannon-Wiener index (1.79), evenness (0.60) and Simpson's index (0.79) were found in the agroforestry site compared to the woodlot plantation site. On the contrary, the highest species richness (n = 14), tree basal area (19.56 m2 ha-1), Margalef's index (1.96) were recorded in woodlot plantation than in the agroforestry site. We observed that at 0-15 cm depth, soil organic matter (2.39%), total nitrogen (0.14%), available phosphorous (62.67 ㎍ g-1) and exchangeable potassium (0.36 meq/100 g) in agroforestry plots were significantly higher compared to other forest sites. At topsoil (15-30 cm depth), soil organic matter (1.67%) and available phosphorous (21.09 ㎍ g-1) were found to be higher in agroforestry site. Conclusions: Both reforestation approaches improved soil function, although woodlot plantation had the higher species richness. Therefore, plantation activities by the sustainable implementation of these two practices are the best alternative to restore the biodiversity, richness and conserve soil fertility in the Madhupur Sal forest of Bangladesh.

I-SSR 분석에 의한 노각나무 천연집단의 유전변이 (Genetic Variation in the Natural Populations of Korean Stewartia (Stewartia koreana Nakai) Based on I-SSR Analysis)

  • 양병훈;구영본;박용구;한상돈
    • 한국자원식물학회지
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    • 제19권1호
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    • pp.189-195
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    • 2006
  • 본 연구는 우리나라 특산수종이며 조경 및 원예적 가치가 높은 노각나무 유전변이를 조사하기 위해 6개 천연집단을 선발하여 DNA I-SSR 표지자를 사용, 유전다양성 및 유전구조를 조사하였다. 5개의 I-SSR primer(#813, 815, 818, 820, 823)에서 총 61개의 증폭산물을 관찰할 수 있었으며, 유전 다양성을 나타내는 P(Percentage of polymorphic loci)값과S.I.(Shannon's information Index)가 남쪽에 분포하는 오봉산(P=88.5%, S.I.=0.467), 금산(P=86.9%, S.I.=0.427), 바랑산(P=83.6%, S.I.=0.425)집단이 높았으며, 북쪽(내륙)에 분포하는 소백산(P=80.3%, S.I.=0.396), 지리산(P=77.1%, S.I.=0.368), 가야산(P=75.4%, S.I.=0.358)집단은 낮았다. 전체 유전변이 중 11.8%만이 집단간에 기인하는 것으로 나타났고, 나머지 88.2%는 집단내 개체간의 차이에서 기인하였다. 유전거리를 이용하여 UPGMA법에 의한 유집분석을 실시한 결과 지리적 분포에 대한 뚜렷한 경향은 나타나지 않았다.

Effects of habitat differences on the genetic diversity of Persicaria thunbergii

  • Nam, Bo Eun;Nam, Jong Min;Kim, Jae Geun
    • Journal of Ecology and Environment
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    • 제40권2호
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    • pp.84-88
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    • 2016
  • To understand the effects of habitat characteristics on the genetic diversity of Persicaria thunbergii, three sites of different environmental conditions in a water system were surveyed. Site A was the closest to the source of the water system, and there was a dam between sites A and B. Site C is located on the lowest downstream in the water system. Vegetation survey of four quadrats at each site was performed, and soil samples were collected for physicochemical analysis. Random amplification of polymorphic DNA (RAPD) analysis of ten P. thunbergii individuals at each site was conducted to calculate population genetic diversity and genetic distance among populations. Soil was sterile sand at site A, whereas loamy soil at sites B and C. A pure stand of P. thunbergii appeared at site A, while other species occurred together (such as Humulus japonicus and Phragmites australis) at sites B (Shannon-Wiener index; $H_B=0.309$) and C ($H_C=0.299$). Similar to the species diversity, genetic diversity (Nei's gene diversity; h) within population of site A ($h_A=0.2381$) was relatively lower than sites B ($h_B=0.2761$) and C ($h_C=0.2618$). However, site C was separated from sites A and B in genetic distance rather than the geographical distance (Nei's genetic distance; A~B, 0.0338; B~C, 0.0685; A~C, 0.0833).

Structure, Alpha and Beta Diversity of Natural Forest Areas in Eco-Zones of Taraba State, Nigeria

  • Dau Henry, Japheth;Bunde Bernard, Meer
    • Journal of Forest and Environmental Science
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    • 제39권1호
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    • pp.1-12
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    • 2023
  • To understand the health conditions and growth patterns of forest estate for environmental resilience and climate change mitigation, assessment of structure and species diversity is paramount. This study aimed at assessing the structure, alpha, and beta diversities of tree species in three ecological zones in Taraba, Nigeria for management purposes. In recent time, no research has been reported on the structure and beta diversity of the study areas. A systematic sampling design was used for data collection. Five sample plots of 50×50 m were laid in each of the six natural forest areas. The result showed a mean DBH (42.5 cm) and a tree height (15.0 m) from the forests. The forests have a structure of an inverse "J-shape," which is typical of natural forests in the tropics. The southern Guinea savanna zone had the highest mean Shannon-Weiner diversity index (2.8). The least beta diversity index (0.02) was between Baissa and Jen Gininya forest areas. Baissa and Bakin Dutse Protected Forest Areas (PFAs) contained 76.5% of the tree species. There is a high chance of all tree species to be found in these 2 forest areas. Proximity to a location influences how similar two tree species are, according to the least beta diversity index (0.02) recorded. The Federal Government's method of management for the forest, known as Gashaka Gumti National Park, may be responsible for the high beta diversity index in the Montane ecozone. Therefore, it should be strongly encouraged to practice strict oversight of natural areas, as their contributions to reducing climate change in Taraba State, Nigeria, cannot be overstated.

Assessment of the Distribution of the Street Trees of Suwon City for Biodiversity

  • Choi, Sun A;Kim, Shin Won
    • KIEAE Journal
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    • 제14권5호
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    • pp.49-57
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    • 2014
  • This research is about analysis and evaluation of biodiversity of Suwon's street tree, then understanding the problem of it and finally finding a solution. Because the increasing damage of the street trees by disease and insects, insecticide is applied to prevent further damage. However, this insecticide is found to be cancer genic and causing hygienic threat to civilians. Therefore, by gathering Suwon's internal statistics about Suwon's street tree, the trees are divided into three categories, tall evergreen trees, deciduous trees, shrubs following Frank's 30-20-10 theory(1990). Also, according to species diversity index, the problem of disease and insect is researched in terms of biodiversity, and here we suggests solutions to counter such problems. According to the results, the trees planted in Suwon was found to be 31 families, 43 genus and 58 species. The most used kinds, almost 85% of the whole species, are found to be Rhododendron indicum (L.) Sweet, Buxus koreana Nakai ex Chung & al, Euonymus japonicus Thunb, Ligustrum obtusifolium Siebold & Zucc. Besides these, the rest of 15% of street trees had little variety. Therefore, it is necessary to plant tree variously and equally in terms of biodiversity. If this Frank's 10-20-30 solution is not enough to completely solve coulure problem, then further research will be done on soil properties, and local features for improvement of Suwon street tress.

Relationship between Diversity and Productivity at Ratargul Fresh Water Swamp Forest in Bangladesh

  • Sharmin, Mahmuda;Dey, Sunanda;Chowdhury, Sangita
    • Journal of Forest and Environmental Science
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    • 제32권3호
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    • pp.291-301
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    • 2016
  • One of the most concerned topics in ecology is the relationship between biodiversity and ecosystem functioning. However, there are few field studies, carried out in forests, although many studies have been done in controlled experiments in grasslands. In this paper, we describe the relationship pattern between three facets of diversity and productivity at Ratargul Fresh Water Swamp Forest (RFWSF) in Bangladesh, which is the only remaining fresh water swamp forest of the country. Sixty sample plots were selected from RFWSF and included six functional traits including leaf area (LA), specific leaf area (SLA), leaf dry matter content (LDMC), tree height, bark thickness and wood density. In analyzing TD, we used Shannon diversity and richness indices, functional diversity was measured by Rao's quadratic entropy (Rao 1982) and Faith's (1992) index was used for phylogenetic diversity (PD). It was found that, TD, FD and PD were positively related with productivity (basal area) due to resource use complementarity but surprisingly the best predictor of tree productivity was FD. The results contribute to the understanding the effects of biodiversity loss and it is essential for conservation decision-making and policy-making of Ratargul Fresh Water Swamp Forest.

한국 희귀 특산식물 꼬리말발도리 집단의 유전적 다양성 및 구조 (Genetic Diversity and Structure of the Korean Rare and Endemic Species, Deutzia pdaniculata Nakai, as Revealed by ISSR Markers)

  • 손성원;최경수;박규태;김은혜;박선주
    • 한국자원식물학회지
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    • 제26권5호
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    • pp.619-627
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    • 2013
  • 꼬리말발도리(Deutzia paniculata Nakai)는 전 세계적으로 우리나라 경상남북도 일부지역에만 자생하는 매우 제한된 분포범위를 가지는 특산식물이다. 이러한 꼬리말발도리 집단의 유전적 다양성 및 구조를 조사하기 위해 5집단 155개체에 대한 ISSR(Inter Simple Sequence Repeat) 분석이 수행되었다. 총 6개의 ISSR 프라이머를 이용하여 31개의 증폭산물을 관찰하였으며, 집단 수준에서의 유전적 다양성의 평균은 SI(Shannon's information index)=0.429, h (Nei's genetic diversity)=0.271로, 매우 높은 수준으로 나타났다. 집단별로는 큰 차이는 없었지만 비교적 높은 개화율을 보이는 밀양, 양산 집단이 다른 집단에 비해 다소 높은 유전 다양성을 유지하고 있는 것으로 나타났다. AMOVA 분석 결과 전체 유전변이의 약 16%가 집단 간 차이에 기인하는 것으로 설명되었으며, 나머지 84%는 집단 내 개체간에 존재하는 것으로 나타났다. 이처럼 제한된 분포범위를 가지는 꼬리말발도리 집단에서 나타나는 높은 유전다양성과 집단간 낮은 유전적 분화율은 완전 타가수정하는 교배양식과 집단내 비교적 풍부한 개체수의 영향인 것으로 판단된다. 따라서 현재의 유전다양성을 유지할 수 있는 적절한 현지 내 보전대책 수립이 요구된다.