• 제목/요약/키워드: Sequence type

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국내 재배마늘의 Cytochrome P450 유전자의 염기다형성 분포 (Nucleotide Polymorphisms of Cytochrome P450 Genes in Domestic Garlic Cultivars)

  • 권순태;정진보
    • 한국자원식물학회지
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    • 제31권5호
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    • pp.531-537
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    • 2018
  • 국내 재배종 마늘을 대상으로 상처(wound) 처리에 특이적으로 발현되는 Cyt. P450 cDNA (ORF 1,419 bp) 중 1,210~1,240 bp 사이에 존재하는 heme-binding domain (HB-domain)의 염기서열 다형성을 바탕으로 국내산 재배마늘의 HB-domain의 다형성 분포를 조사하였다. 국내 재배마늘에서 7개의 각각 다른 염기서열을 가진 HB-domain 마커를 탐색하였고, 전국 6개 지역의 재배농가에서 임의로 수집한 120개 마늘의 마커 종류별 분포도를 조사하였다. 경북, 충남, 충북, 강원지역에서 재배되는 한지형 마늘은 아미노산서열 FGGGRRICPG, DNA서열 5'-TTT/GGC/GGT/GGA/CGG/AGA/ATA/TGT/CCT/GGA-3'인 KP2형의 HB-domain을 가진 재배종이 51.3%로 가장 많이 분포하였고, KP1형 13.7%, CP형 11.3%, CM형 8.8%, KW2형 5% 및 기타 1.3%인 것으로 나타났다. 경남지역 재배지에서 수집한 난지형 마늘은 아미노산서열 FGAGRRICPG, DNA서열 '5-TTT/GGC/GCA/GGA/CGG/AGA/ATT/TGT/CCT/GGA-3'인 KM형이 52.5%로 가장 많았고, KP2형 22.5%, KW2형 5%, KP1 및 CP형이 각각 2.5%가 분포하는 것으로 나타났으나 CM형은 존재하지 않았다. 이 결과는 우리나라에 재배되는 마늘은 유전적으로 상당히 혼재된 상태로 존재하며, 특정 지역을 대표하는 유전적 특징을 가진 재배종을 단정하기는 어려운 것으로 판단된다.

다중변수 순차층서 모델 개발을 통한 울릉분지 남서부 대륙주변부의 층서연구 (Muti-variable Sequence Stratigraphic Model and its Application to Shelf-Slope System of the Southwestern Ulleung Basin Margin)

  • 윤석훈;박세진;조성권
    • 한국석유지질학회지
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    • 제5권1_2호
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    • pp.36-47
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    • 1997
  • 본 연구에서는 기존 Exxon group의 순차층서 모델이 갖고 있는 적용의 한계성을 극복하기 위하여 다중변수 순차층서 모델을 제시하였다. 이 모델에서는 2~3차수의 주기성을 갖고 변화되는 범세계적 해수면 변동, 지구조운동, 퇴적물 공급 등의 영향요소를 모두 변수로 간주하며, 이들 요소에 의해 순차층의 내부구성과 경계면 타입이 결정된다. 순차층을 구성하는 기본 단위로 해석적 층서단위인 퇴적계 연합체(systems tract)대신, 내부 지층의 집적형태에 의해 구분되는 기술적 층서단위인 부순차층세트(parasequence set)를 채택하였으며, 부순차층세트의 타입은 상대적 해수면 변동과 퇴적물 공급속도의 변화를 반영한다. 따라서 본 순차층서 모델은, 네 가지 타입의 상대적 해수면 변동과 세 등급의 퇴적물 공급 변화 사이의 조합으로써 예상되는 단일 또는 $2{\~}4$개의 부순차층세트로 구성된 7가지 타입의 순차층을 보여준다. 다중변수 순차층서 모델을 울릉분지 남서부 대륙주변부에 적용한 결과, 순차층의 타입은 울릉분지의 형성과 닫힘에 따른 3단계의 분지주변부 지구조 운동의 변화를 잘 반영한다. 즉, 순차층을 구성하는 부순차층세트 조합의 변화와 울릉분지 지구조 운동의 타입과 속도가 시기적으로 일치 한다. 해저면의 급격한 침강을 동반한 울릉분지의 후열도 열개 동안에는 분지의 급격 한 침강으로 인해 상대적 인 해수면은 지속적으로 상승되었고, 많은 양의 퇴적물이 공급되어 1개의 부순차층세트로 구성된 순차층이 형성되었다. 이후, 압축성 변형을 동반한 울릉분지의 닫힘 동안에는, 분지 침강이 느려지고 국지적으로 융기가 일어나 하강 또는 상승우세의 상대적 해수면 변동이 야기되었고, 또한 지구조적 요인에 의해 통제되는 퇴적물 집적속도의 지역적인 차이로 인하여 변형대와 비변형대에서 상이한 순차층이 형성되었다. 분지 닫힘단계 이후에는 다시 해저면이 전반적으로 침강되면서, 상승이 우세한 상대적 해수면 변동과 보통 또는 빠른 퇴적물 집적속도가 결합하여 2-3개의 부순차층세트로 구성된 순차층을 형성하였다.

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구조 생물학을 이용한 Antifreeze protein의 최근 연구동향 (Recent Advances in Structural Studies of Antifreeze Proteins)

  • 이준혁;이성구;김학준
    • Ocean and Polar Research
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    • 제33권2호
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    • pp.159-169
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    • 2011
  • Antifreeze proteins (AFPs) have ice binding affinity, depress freezing temperature and inhibit ice recystallization which protect cellular membranes in polar organisms. Recent structural studies of antifreeze proteins have significantly expanded our understanding of the structure-function relationship and ice crystal growth inhibition. Although AFPs (Type I-IV AFP from fish, insect AFP and Plant AFP) have completely different fold and no sequence homology, they share a common feature of their surface area for ice binding property. The conserved ice-binding sites are relatively flat and hydrophobic. For example, Type I AFP has an amphipathic, single ${\alpha}$-helix and has regularly spaced Thr-Ala residues which make direct interaction with oxygen atoms of ice crystals. Unlike Type I AFP, Type II and III AFP are compact globular proteins that contain a flat ice-binding patch on the surface. Type II and Type III AFP show a remarkable structural similarity with the sugar binding lectin protein and C-terminal domain of sialic acid synthase, respectively. Type IV is assumed to form a four-helix bundle which has sequence similarity with apolipoprotein. The results of our modeling suggest an ice-binding induced structural change of Type IV AFP. Insect AFP has ${\beta}$-helical structure with a regular array of Thr-X-Thr motif. Threonine residues of each Thr-X-Thr motif fit well into the ice crystal lattice and provide a good surface-surface complementarity. This review focuses on the structural characteristics and details of the ice-binding mechanism of antifreeze proteins.

Diversity and distribution of mating types in Lentinula edodes and mating type preference in domesticated strains

  • Ha, Byeong-Suk;Ro, Hyeon-Su
    • 한국균학회소식:학술대회논문집
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    • 한국균학회 2018년도 춘계학술대회 및 임시총회
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    • pp.37-37
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    • 2018
  • Mating type of Lentinula edodes is determined by two unlinked genetic loci, A and B. To better understand mating behavior of L. edodes, we investigated variations in mating type genes in129 dikaryotic strains collected from East Asia. Through sequence analysis of A locus, we discovered that hypervariable region spanning N-term of HD2-intergenic region-N-term of HD1 could represent A mating type. Mating and hypervariable region analyses revealed 70 unique A mating types: 27 from 98 cultivated strains, 53 from 31 wild strains, and 10 commonly found. It was also revealed that only a few A mating type alleles such as A1, A4, A5, and A7 were prevalent in cultivated strains. Contrarily, A mating type in wild strains was highly diverse: 23 unique A alleles were discovered in small mountainous area in Korean peninsula, suggesting rapid evolution of A mating type in nature. The B locus was assessed by allelic variations in pheromone (PHB) and pheromone receptor (RCB) pairs which constituted subloci Ba and Bb. Sequence analyses and mating assay revealed 5 alleles of RCB1 with 9 associated PHBs in Ba sublocus and 3 alleles of RCB2 with 5 associated PHBs in Bb sublocus. Each RCB was primarily associated with two PHBs. Each PHB-RCB pair was always discovered as a distinct unit. This allowed us to propose 15 B mating types via combinations of five Ba and three Bb subloci. Further investigation on 129 strains confirmed that the B locus, unlike the A locus, was indeed restricted to 15 mating types. Thus, the total number of mating types became 1,050 in L. edodes through a combination of 70 A and 15 B. This number will further increase because of rapid diversification of A mating type. Our findings provide a comprehensive and practical knowledge on mating behaviors of L. edodes.

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${\gamma}$-NGF Produced in CHO Cells Does Not Cleave Mouse Ren-2 Prorenin

  • Rhee, Hee-Sub;Jeon, Byung-Hoon;Kim, Won-Sin
    • Animal cells and systems
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    • 제1권3호
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    • pp.463-466
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    • 1997
  • We have recently demonstrated, by protein and cDNA sequence analysis, that prorenin converting enzyme (PRECE) in the mouse submandibular gland is identical to the epidermal growth factor-binding protein (EGF-BP)type B. However, type A and C did not show prorenin converting activity. To demonstrate whether r-NGF is involved in prorenin processing, we have cloned cDNA of r-NGF and examined prorenin converting activity using the CHO cell expression system, Trypsin converted the 33 kDa r-NGF precursor produced in CHO cells to a two-chain form, 9.4 and 16.4 kDa polypeptide chains, which has been known as an active form of r-NGF in mouse SMG (Server and Shooter, 1976). However, the two chain forms of r-NGF did not reveal prorenin-processing activity. Thus, only PRECE is involved in prorenin processing in mouse SMG. This result shows that their substrate specificities appear to be very strict, although some kallikreins share a high degree of amino acid sequence identity.

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T4 티미딜산 생성효소 유전자의 Splicing 활성에 있어 Internal Guide Sequence 구조의 기능적 역할 (Functional Role of the Internal Guide Sequence in Splicing Activity of T4 Thymidylate Synthase Gene in vivo)

  • Shin, Sook;Park, In-Kook
    • 미생물학회지
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    • 제31권3호
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    • pp.208-213
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    • 1993
  • The structural and functional roles of IGS element of T4 td intron in thymidylate synthase activity in vivo were investigated Site-directed mutagenesis was employed to crete mutations of IGS element of T4 td intron, When a U-G pari was changed to a U-C pari in the 5' splice site of P1 stem of td intron, the activity of thymidylate synthase was completely abolished whereas the wild type retained the normal activity of enzyme. When U at 12 position within IGS element was changed to C, the activity of thymidylate synthase was approximately 32% of that of the wild type. Comparison of enzyme activities suggests that IGS element within P1 structure is an essential requirement for splicing of td gene in vivo.

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Klebsiella pneumoniae infection secondary to bovine viral diarrhea in two prematurely born calves

  • Lee, Kyunghyun;Kim, Ha-Young;Choi, Eun-Jin;Lee, Kyoung-Ki;So, ByungJae;Jung, Ji-Youl
    • 대한수의학회지
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    • 제60권3호
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    • pp.183-186
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    • 2020
  • This paper describes the development of neurological signs of two prematurely born calves four days after birth. The pathological examination results indicated fibrinopurulent polyserositis, including meningoencephalitis with suppurative bronchopneumonia. Bovine viral diarrhea virus subtype 2a was detected in most of the internal organs, and the bacterial colonies cultured from the samples were identified as Klebsiella (K.) pneumoniae. Molecular analysis via multilocus sequence typing identified a different K. pneumoniae isolate in each calf-type 14 in calf A and type 65 in calf B. This is the first report identifying K. pneumoniae sequence types 14 and 65 in cattle.

The Evolutionary Statuses of Solar Type Detached Eclipsing Binary Stars

  • Kanjanascul, Chanisa;Bach, Kie-Huon;Hong, Kyeong-Soo;Kim, Sung-Eun;Lee, Jae-Woo;Kang, Young-Woon
    • Journal of Astronomy and Space Sciences
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    • 제29권2호
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    • pp.131-140
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    • 2012
  • We presented fundamental stellar parameters and evolutionary statuses of six solar type detached eclipsing binaries whose masses are in the range of 0.97-1.43 $M_{\odot}$. EK Cep and FL Lyr belong to the zero age main sequence. HS Hya, IT Cas and CD Tau are on the main sequence. Their ages are 1.3, 1.9 and 2.2 Gyr, respectively. Both component stars of AI Phe evolved to sub giants and its age is 4.0 Gyr. Those ages of the detached binary systems show good agreement with the time scale for synchronization and circularization of the binary systems.

ON THE HAJECK-RENYI-TYPE INEQUALITY FOR $\tilde{\rho}$-MIXING SEQUENCES

  • Choi, Jeong-Yeol;Baek, Jong-Il
    • 호남수학학술지
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    • 제30권3호
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    • pp.479-486
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    • 2008
  • Let {${\Omega}$, F, P} be a probability space and {$X_n{\mid}n{\geq}1$} be a sequence of random variables defined on it. We study the Hajeck-Renyi-type inequality for p..mixing random variable sequences and obtain the strong law of large numbers by using this inequality. We also consider the strong law of large numbers for weighted sums of ${\tilde{\rho}}$-mixing sequences.

AN EMPIRICAL RELATION BETWEEN CAlI EMISSION FLUX EXCESS AND STELLAR AGE FOR LATE TYPE MAIN SEQUENCE STARS

  • Park, Young-Deuk;Yun, Hong-Sik
    • 천문학회지
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    • 제16권2호
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    • pp.31-42
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    • 1983
  • Making use of a relation proposed by Wielen (1977), a new empirical relation between Call emission flux and stellar age is derived by analyzing Wilson and Woolley's spectroscopic data (1970) of late type main sequence stars (K0-M5) and kinematic properties of those stars given by Gliese (1969). The proposed relation shows that the emission flux excess of the Call H-K lines, $F_k'+F_k'$ introduced by Linsky et al. (1979) decreases with stellar age $\tau$ as $\tau^{-0.51}$, consistent with the inverse square law as noted by Skumanich (1972).

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